Wall clock time and date at job start Sat Apr 11 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38656 * 120.79559 * 2 1 4 4 C 1.38184 * 119.17101 * 180.25676 * 3 2 1 5 5 C 1.50698 * 119.60475 * 179.71040 * 4 3 2 6 6 N 1.46901 * 109.46997 * 94.72975 * 5 4 3 7 7 C 1.47846 * 110.99547 * 69.87578 * 6 5 4 8 8 C 1.54915 * 104.79538 * 213.63497 * 7 6 5 9 9 C 1.55138 * 101.64918 * 37.06908 * 8 7 6 10 10 O 1.42903 * 110.70514 * 82.73025 * 9 8 7 11 11 C 1.50702 * 110.70453 * 205.96503 * 9 8 7 12 12 H 1.07994 * 120.00075 * 113.60253 * 11 9 8 13 13 C 1.37882 * 119.99448 * 293.60045 * 11 9 8 14 14 N 1.31507 * 120.00690 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99337 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47163 * 90.00356 * 15 13 11 17 17 H 1.48502 * 109.47114 * 209.99823 * 15 13 11 18 18 H 1.48502 * 109.47427 * 330.00136 * 15 13 11 19 19 C 1.47437 * 111.00223 * 309.03175 * 6 5 4 20 20 N 1.31887 * 120.78792 * 359.44083 * 4 3 2 21 21 C 1.31844 * 121.73710 * 0.27224 * 20 4 3 22 22 C 1.38325 * 120.74749 * 0.02562 * 21 20 4 23 23 Br 1.89093 * 120.42693 * 179.97438 * 22 21 20 24 24 H 1.09003 * 109.46603 * 270.29669 * 1 2 3 25 25 H 1.08998 * 109.46746 * 30.29645 * 1 2 3 26 26 H 1.08997 * 109.46743 * 150.29698 * 1 2 3 27 27 H 1.08001 * 120.40982 * 359.97438 * 3 2 1 28 28 H 1.08999 * 109.47022 * 334.73425 * 5 4 3 29 29 H 1.09001 * 109.47374 * 214.73418 * 5 4 3 30 30 H 1.08995 * 110.38030 * 332.46412 * 7 6 5 31 31 H 1.09000 * 110.37255 * 94.81067 * 7 6 5 32 32 H 1.08995 * 110.99221 * 155.16374 * 8 7 6 33 33 H 1.09001 * 110.98790 * 278.98277 * 8 7 6 34 34 H 0.96708 * 113.99729 * 66.39819 * 10 9 8 35 35 H 0.96997 * 120.00710 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.89349 * 242.66131 * 19 6 5 37 37 H 1.08999 * 109.89127 * 3.85194 * 19 6 5 38 38 H 1.07994 * 119.62562 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2170 1.1911 0.0000 4 6 3.5982 1.1519 -0.0054 5 6 4.3795 2.4405 -0.0121 6 7 4.7366 2.8038 1.3658 7 6 5.7490 1.8756 1.9129 8 6 5.4122 1.7672 3.4211 9 6 3.8614 1.8023 3.3991 10 8 3.3305 0.5048 3.1219 11 6 3.3219 2.3331 4.7023 12 1 2.8016 3.2792 4.7260 13 6 3.4927 1.6108 5.8643 14 7 4.1266 0.4590 5.8356 15 14 2.8233 2.2685 7.4796 16 1 1.4341 1.7814 7.6747 17 1 3.6760 1.7935 8.5988 18 1 2.8277 3.7532 7.4495 19 6 3.5520 2.7768 2.2432 20 7 4.2410 0.0002 0.0005 21 6 3.5998 -1.1518 0.0064 22 6 2.2171 -1.1916 0.0061 23 35 1.3068 -2.8490 0.0139 24 1 -0.3633 0.0053 1.0277 25 1 -0.3633 0.8873 -0.5184 26 1 -0.3633 -0.8926 -0.5092 27 1 1.6968 2.1375 -0.0004 28 1 3.7715 3.2318 -0.4505 29 1 5.2878 2.3118 -0.6009 30 1 5.6670 0.8996 1.4347 31 1 6.7506 2.2832 1.7762 32 1 5.7757 0.8270 3.8358 33 1 5.8142 2.6169 3.9730 34 1 3.4978 -0.1455 3.8179 35 1 4.2471 -0.0490 6.6531 36 1 3.3614 3.7740 2.6399 37 1 2.6845 2.4257 1.6844 38 1 4.1605 -2.0748 0.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600168310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:33 Heat of formation + Delta-G solvation = -3.072983 kcal Electronic energy + Delta-G solvation = -22791.033090 eV Core-core repulsion = 19486.719772 eV Total energy + Delta-G solvation = -3304.313318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.39505 -38.13549 -34.99864 -33.85982 -32.26954 -32.03273 -30.59352 -28.69740 -28.19523 -27.48625 -25.67050 -23.91423 -22.94533 -21.04447 -19.93496 -19.22708 -17.10812 -16.61126 -15.96709 -15.63041 -15.20038 -14.87022 -14.28457 -14.05300 -13.86792 -13.48296 -13.16518 -12.75482 -12.54131 -12.51218 -12.19175 -11.81008 -11.74135 -11.45313 -11.21994 -10.96894 -10.89855 -10.84178 -10.55724 -10.43713 -10.28523 -10.24493 -9.86836 -9.35429 -9.28099 -9.01817 -8.58494 -8.52245 -8.03151 -7.66079 -6.19296 -4.26338 1.16562 1.46501 1.72139 3.22339 3.29785 3.32927 3.91341 4.30937 4.50420 4.69661 4.79696 4.86529 5.07339 5.15206 5.45197 5.49233 5.56718 5.63034 5.76948 5.81262 5.93340 6.02723 6.09328 6.23692 6.26974 6.29655 6.41764 6.49963 6.62375 6.82645 6.96816 7.13025 7.44252 7.52304 7.65465 7.73227 7.85065 8.16119 8.20561 8.74502 9.41833 9.56274 10.87444 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.013360 B = 0.004851 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.278831 B = 5770.927880 C = 6864.444007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.008 4.008 3 C -0.149 4.149 4 C 0.132 3.868 5 C 0.095 3.905 6 N -0.515 5.515 7 C 0.027 3.973 8 C -0.130 4.130 9 C 0.243 3.757 10 O -0.584 6.584 11 C -0.531 4.531 12 H 0.060 0.940 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.042 3.958 20 N -0.462 5.462 21 C 0.143 3.857 22 C -0.145 4.145 23 Br -0.051 7.051 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.135 0.865 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.380 0.620 35 H 0.266 0.734 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 -4.148 -13.653 15.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.017 4.017 3 C -0.171 4.171 4 C -0.008 4.008 5 C -0.035 4.035 6 N -0.237 5.237 7 C -0.100 4.100 8 C -0.169 4.169 9 C 0.203 3.797 10 O -0.394 6.394 11 C -0.570 4.570 12 H 0.078 0.922 13 C -0.131 4.131 14 N -0.537 5.537 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.085 4.085 20 N -0.173 5.173 21 C -0.016 4.016 22 C -0.227 4.227 23 Br 0.033 6.967 24 H 0.103 0.897 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.153 0.847 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.231 0.769 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.133 -4.060 -14.097 15.241 hybrid contribution -1.152 -0.474 1.773 2.167 sum -5.285 -4.534 -12.324 14.155 Atomic orbital electron populations 1.20975 0.89981 1.03324 1.03732 1.20046 0.96745 0.91527 0.93388 1.21741 0.94752 0.97905 1.02656 1.22176 0.91691 0.95032 0.91868 1.21454 0.98771 0.89666 0.93579 1.64073 1.10957 1.48203 1.00455 1.23293 0.94145 0.95221 0.97346 1.23145 1.00211 1.01515 0.92053 1.19575 0.88311 0.81105 0.90748 1.86085 1.81288 1.22398 1.49590 1.21607 1.36788 1.06234 0.92351 0.92218 1.24981 0.94118 0.94800 0.99179 1.69593 1.41829 1.13535 1.28768 0.86510 0.78855 0.79314 0.82809 1.20623 1.21140 1.19799 1.23086 0.91352 0.99907 0.94177 1.67610 1.39723 0.97597 1.12333 1.22595 0.89341 0.96726 0.92962 1.22658 0.96129 0.91544 1.12341 1.96608 1.77404 1.24882 1.97773 0.89670 0.90916 0.90585 0.84721 0.89698 0.89615 0.91549 0.92342 0.91142 0.92293 0.76854 0.92378 0.90486 0.92444 0.82781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 9.63 36.01 0.35 -1.15 16 2 C -0.01 -0.11 5.92 -104.29 -0.62 -0.73 16 3 C -0.15 -2.33 7.47 -39.45 -0.29 -2.63 16 4 C 0.13 2.21 4.94 -82.59 -0.41 1.80 16 5 C 0.09 1.50 5.72 -4.98 -0.03 1.47 16 6 N -0.51 -9.78 5.41 -232.69 -1.26 -11.04 16 7 C 0.03 0.55 6.47 -2.29 -0.01 0.53 16 8 C -0.13 -3.06 5.66 -24.59 -0.14 -3.20 16 9 C 0.24 5.90 0.86 -89.95 -0.08 5.82 16 10 O -0.58 -14.66 13.01 -35.23 -0.46 -15.12 16 11 C -0.53 -14.14 8.21 -34.44 -0.28 -14.42 16 12 H 0.06 1.59 7.53 -52.49 -0.40 1.19 16 13 C 0.07 1.88 5.28 -17.82 -0.09 1.78 16 14 N -0.90 -24.08 10.69 55.43 0.59 -23.48 16 15 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 19 C 0.04 0.89 5.69 -2.84 -0.02 0.87 16 20 N -0.46 -8.10 8.50 -9.45 -0.08 -8.18 16 21 C 0.14 2.32 10.95 -17.51 -0.19 2.13 16 22 C -0.15 -2.23 6.24 -39.37 -0.25 -2.47 16 23 Br -0.05 -0.67 31.97 -68.01 -2.17 -2.84 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 26 H 0.08 0.84 6.78 -51.93 -0.35 0.49 16 27 H 0.14 1.85 7.62 -52.49 -0.40 1.45 16 28 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 29 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 30 H 0.07 1.38 5.73 -51.93 -0.30 1.09 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.78 7.76 -51.93 -0.40 1.37 16 33 H 0.06 1.43 8.04 -51.93 -0.42 1.01 16 34 H 0.38 10.24 6.99 45.56 0.32 10.55 16 35 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.08 1.66 7.63 -51.93 -0.40 1.26 16 37 H 0.06 1.17 4.33 -51.93 -0.22 0.94 16 38 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 322.80 15.07 4.86 4.86 Total: -1.00 -27.66 322.80 -9.83 -37.49 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -4.23 Total: 12.74 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -2.06 Total: -10.19 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: -0.75 Total: -42.71 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.46 Total: -15.12 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -2.17 Total: -2.84 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.66 -9.83 -37.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600168310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.419 kcal (2) G-P(sol) polarization free energy of solvation -27.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds