Wall clock time and date at job start Sat Apr 11 2020 05:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38656 * 120.79559 * 2 1 4 4 C 1.38184 * 119.17101 * 180.25676 * 3 2 1 5 5 C 1.50698 * 119.60475 * 179.71040 * 4 3 2 6 6 N 1.46901 * 109.46997 * 94.72975 * 5 4 3 7 7 C 1.47846 * 110.99547 * 69.87578 * 6 5 4 8 8 C 1.54915 * 104.79538 * 213.63497 * 7 6 5 9 9 C 1.55138 * 101.64918 * 37.06908 * 8 7 6 10 10 O 1.42903 * 110.70514 * 82.73025 * 9 8 7 11 11 C 1.50702 * 110.70453 * 205.96503 * 9 8 7 12 12 H 1.07994 * 120.00075 * 113.60253 * 11 9 8 13 13 C 1.37882 * 119.99448 * 293.60045 * 11 9 8 14 14 N 1.31507 * 120.00690 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99337 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47163 * 90.00356 * 15 13 11 17 17 H 1.48502 * 109.47114 * 209.99823 * 15 13 11 18 18 H 1.48502 * 109.47427 * 330.00136 * 15 13 11 19 19 C 1.47437 * 111.00223 * 309.03175 * 6 5 4 20 20 N 1.31887 * 120.78792 * 359.44083 * 4 3 2 21 21 C 1.31844 * 121.73710 * 0.27224 * 20 4 3 22 22 C 1.38325 * 120.74749 * 0.02562 * 21 20 4 23 23 Br 1.89093 * 120.42693 * 179.97438 * 22 21 20 24 24 H 1.09003 * 109.46603 * 270.29669 * 1 2 3 25 25 H 1.08998 * 109.46746 * 30.29645 * 1 2 3 26 26 H 1.08997 * 109.46743 * 150.29698 * 1 2 3 27 27 H 1.08001 * 120.40982 * 359.97438 * 3 2 1 28 28 H 1.08999 * 109.47022 * 334.73425 * 5 4 3 29 29 H 1.09001 * 109.47374 * 214.73418 * 5 4 3 30 30 H 1.08995 * 110.38030 * 332.46412 * 7 6 5 31 31 H 1.09000 * 110.37255 * 94.81067 * 7 6 5 32 32 H 1.08995 * 110.99221 * 155.16374 * 8 7 6 33 33 H 1.09001 * 110.98790 * 278.98277 * 8 7 6 34 34 H 0.96708 * 113.99729 * 66.39819 * 10 9 8 35 35 H 0.96997 * 120.00710 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.89349 * 242.66131 * 19 6 5 37 37 H 1.08999 * 109.89127 * 3.85194 * 19 6 5 38 38 H 1.07994 * 119.62562 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2170 1.1911 0.0000 4 6 3.5982 1.1519 -0.0054 5 6 4.3795 2.4405 -0.0121 6 7 4.7366 2.8038 1.3658 7 6 5.7490 1.8756 1.9129 8 6 5.4122 1.7672 3.4211 9 6 3.8614 1.8023 3.3991 10 8 3.3305 0.5048 3.1219 11 6 3.3219 2.3331 4.7023 12 1 2.8016 3.2792 4.7260 13 6 3.4927 1.6108 5.8643 14 7 4.1266 0.4590 5.8356 15 14 2.8233 2.2685 7.4796 16 1 1.4341 1.7814 7.6747 17 1 3.6760 1.7935 8.5988 18 1 2.8277 3.7532 7.4495 19 6 3.5520 2.7768 2.2432 20 7 4.2410 0.0002 0.0005 21 6 3.5998 -1.1518 0.0064 22 6 2.2171 -1.1916 0.0061 23 35 1.3068 -2.8490 0.0139 24 1 -0.3633 0.0053 1.0277 25 1 -0.3633 0.8873 -0.5184 26 1 -0.3633 -0.8926 -0.5092 27 1 1.6968 2.1375 -0.0004 28 1 3.7715 3.2318 -0.4505 29 1 5.2878 2.3118 -0.6009 30 1 5.6670 0.8996 1.4347 31 1 6.7506 2.2832 1.7762 32 1 5.7757 0.8270 3.8358 33 1 5.8142 2.6169 3.9730 34 1 3.4978 -0.1455 3.8179 35 1 4.2471 -0.0490 6.6531 36 1 3.3614 3.7740 2.6399 37 1 2.6845 2.4257 1.6844 38 1 4.1605 -2.0748 0.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600168310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:32 Heat of formation + Delta-G solvation = -21.542030 kcal Electronic energy + Delta-G solvation = -22791.833968 eV Core-core repulsion = 19486.719772 eV Total energy + Delta-G solvation = -3305.114196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.66150 -39.74672 -36.68907 -35.08723 -34.06397 -33.58525 -31.96326 -30.19183 -29.81724 -28.65107 -27.32038 -25.58321 -24.14148 -22.44085 -21.63321 -20.84440 -19.07974 -17.82450 -17.20924 -17.16926 -16.87592 -16.45037 -15.92831 -15.60191 -15.37857 -14.87408 -14.57129 -14.10560 -13.82977 -13.63250 -13.53184 -13.50314 -13.40545 -13.12674 -12.78167 -12.65360 -12.43965 -12.27153 -12.21994 -12.10590 -11.97871 -11.78190 -11.35623 -11.13749 -10.61343 -10.50014 -10.26480 -9.99842 -9.72366 -9.19356 -8.20151 -6.34515 -0.04169 0.27729 0.57489 1.38135 1.40738 1.49609 2.37916 2.68261 3.04187 3.16938 3.43211 3.63552 3.71802 3.94155 4.01186 4.19405 4.31934 4.45358 4.47080 4.54237 4.62477 4.66747 4.70137 4.71826 4.84349 4.96024 4.96870 5.13529 5.17823 5.19316 5.34025 5.51746 5.56386 5.65454 5.84439 5.96343 6.21190 6.21710 6.70087 6.97960 7.36819 7.48398 8.84177 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.013360 B = 0.004851 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.278831 B = 5770.927880 C = 6864.444007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.016 4.016 3 C -0.157 4.157 4 C 0.116 3.884 5 C 0.093 3.907 6 N -0.511 5.511 7 C 0.038 3.962 8 C -0.125 4.125 9 C 0.233 3.767 10 O -0.581 6.581 11 C -0.554 4.554 12 H 0.054 0.946 13 C 0.030 3.970 14 N -0.914 5.914 15 Si 0.955 3.045 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 C 0.050 3.950 20 N -0.483 5.483 21 C 0.127 3.873 22 C -0.154 4.154 23 Br -0.032 7.032 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.154 0.846 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.369 0.631 35 H 0.267 0.733 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.776 -3.566 -14.461 15.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.026 4.026 3 C -0.178 4.178 4 C -0.023 4.023 5 C -0.035 4.035 6 N -0.233 5.233 7 C -0.089 4.089 8 C -0.164 4.164 9 C 0.193 3.807 10 O -0.389 6.389 11 C -0.592 4.592 12 H 0.072 0.928 13 C -0.170 4.170 14 N -0.554 5.554 15 Si 0.781 3.219 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.195 1.195 19 C -0.078 4.078 20 N -0.194 5.194 21 C -0.032 4.032 22 C -0.236 4.236 23 Br 0.053 6.947 24 H 0.097 0.903 25 H 0.114 0.886 26 H 0.104 0.896 27 H 0.171 0.829 28 H 0.132 0.868 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.218 0.782 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.115 -3.472 -14.927 16.156 hybrid contribution -0.865 -0.723 1.994 2.290 sum -5.980 -4.194 -12.933 14.853 Atomic orbital electron populations 1.21025 0.87973 1.05015 1.03712 1.20451 0.98305 0.91277 0.92541 1.22010 0.94562 0.98997 1.02257 1.22315 0.92377 0.95028 0.92606 1.21621 0.99930 0.90368 0.91622 1.64043 1.09799 1.47884 1.01605 1.23160 0.95404 0.95566 0.94788 1.22965 0.99900 0.99368 0.94203 1.19736 0.88534 0.81103 0.91376 1.86093 1.81422 1.22545 1.48869 1.21915 1.37197 1.06281 0.93850 0.92792 1.25643 0.94348 0.95064 1.01938 1.69690 1.42250 1.14170 1.29328 0.85613 0.78177 0.78803 0.79341 1.20371 1.20915 1.19455 1.22928 0.92629 0.98592 0.93602 1.67568 1.40552 0.98220 1.13047 1.22855 0.90109 0.96924 0.93309 1.22850 0.96178 0.92778 1.11784 1.96611 1.76852 1.23554 1.97701 0.90314 0.88610 0.89647 0.82861 0.86814 0.88534 0.92070 0.90673 0.93710 0.93821 0.78188 0.92399 0.90959 0.91493 0.81775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.63 71.24 0.69 -1.98 16 2 C -0.02 -0.46 5.92 -19.65 -0.12 -0.58 16 3 C -0.16 -4.61 7.47 22.36 0.17 -4.44 16 4 C 0.12 3.70 4.94 42.54 0.21 3.91 16 5 C 0.09 2.75 5.72 85.56 0.49 3.23 16 6 N -0.51 -18.62 5.41 -890.10 -4.82 -23.44 16 7 C 0.04 1.52 6.47 86.78 0.56 2.08 16 8 C -0.13 -5.96 5.66 31.98 0.18 -5.78 16 9 C 0.23 11.32 0.86 -10.36 -0.01 11.31 16 10 O -0.58 -29.38 13.01 -148.98 -1.94 -31.31 16 11 C -0.55 -29.59 8.21 25.60 0.21 -29.38 16 12 H 0.05 2.87 7.53 -2.91 -0.02 2.85 16 13 C 0.03 1.59 5.28 84.66 0.45 2.04 16 14 N -0.91 -49.60 10.69 21.45 0.23 -49.37 16 15 Si 0.95 42.56 29.54 68.60 2.03 44.58 16 16 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 C 0.05 2.06 5.69 86.65 0.49 2.56 16 20 N -0.48 -16.57 8.50 -183.82 -1.56 -18.13 16 21 C 0.13 4.05 10.95 84.71 0.93 4.98 16 22 C -0.15 -4.57 6.24 22.40 0.14 -4.43 16 23 Br -0.03 -0.79 31.97 -20.37 -0.65 -1.44 16 24 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.10 1.65 8.10 -2.39 -0.02 1.63 16 26 H 0.08 1.70 6.78 -2.39 -0.02 1.68 16 27 H 0.15 3.79 7.62 -2.91 -0.02 3.77 16 28 H 0.11 2.69 8.04 -2.39 -0.02 2.67 16 29 H 0.10 2.65 8.08 -2.39 -0.02 2.63 16 30 H 0.06 2.52 5.73 -2.39 -0.01 2.51 16 31 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.04 2.31 7.76 -2.39 -0.02 2.30 16 33 H 0.04 2.15 8.04 -2.39 -0.02 2.13 16 34 H 0.37 20.26 6.99 -74.05 -0.52 19.74 16 35 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 36 H 0.07 3.04 7.63 -2.39 -0.02 3.02 16 37 H 0.07 2.62 4.33 -2.39 -0.01 2.61 16 38 H 0.17 4.64 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -58.37 322.80 -1.75 -60.12 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: 0.57 Total: 35.46 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 4.39 Total: -16.47 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -6.15 Total: -90.94 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -1.94 Total: -31.31 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 35 Polarization: -0.79 SS G_CDS: -0.65 Total: -1.44 kcal Total: -58.37 -1.75 -60.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600168310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.578 kcal (2) G-P(sol) polarization free energy of solvation -58.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds