Wall clock time and date at job start Sat Apr 11 2020 05:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31650 * 1 3 3 Si 1.86808 * 119.99834 * 2 1 4 4 H 1.48501 * 109.46933 * 270.00282 * 3 2 1 5 5 H 1.48498 * 109.47022 * 29.99778 * 3 2 1 6 6 H 1.48494 * 109.47033 * 150.00423 * 3 2 1 7 7 C 1.38682 * 120.00601 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99733 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00586 * 179.97438 * 7 2 1 10 10 C 1.76192 * 100.00334 * 185.09928 * 9 7 2 11 11 C 1.38993 * 120.12235 * 353.10858 * 10 9 7 12 12 C 1.38089 * 119.97829 * 180.02562 * 11 10 9 13 13 C 1.38399 * 120.22831 * 359.97438 * 12 11 10 14 14 C 1.38222 * 120.24933 * 359.97438 * 13 12 11 15 15 C 1.38689 * 120.01896 * 0.02562 * 14 13 12 16 16 N 1.39938 * 120.11294 * 179.97438 * 15 14 13 17 17 C 1.34773 * 120.00000 * 34.39959 * 16 15 14 18 18 O 1.21287 * 120.00126 * 355.95341 * 17 16 15 19 19 C 1.50699 * 119.99859 * 175.95800 * 17 16 15 20 20 S 1.81400 * 109.47009 * 179.97438 * 19 17 16 21 21 C 1.81407 * 102.99889 * 179.97438 * 20 19 17 22 22 C 1.52997 * 109.47197 * 179.97438 * 21 20 19 23 23 C 1.50698 * 109.47267 * 180.02562 * 22 21 20 24 24 N 1.34777 * 120.00096 * 180.02562 * 23 22 21 25 25 O 1.21282 * 120.00109 * 359.97438 * 23 22 21 26 26 H 0.96994 * 120.00386 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.01626 * 0.02562 * 11 10 9 28 28 H 1.07994 * 119.89053 * 180.02562 * 12 11 10 29 29 H 1.07998 * 119.87846 * 180.02562 * 13 12 11 30 30 H 1.08000 * 119.99316 * 179.74442 * 14 13 12 31 31 H 0.97001 * 119.99823 * 214.40195 * 16 15 14 32 32 H 1.09001 * 109.47092 * 300.00219 * 19 17 16 33 33 H 1.08999 * 109.47308 * 59.99993 * 19 17 16 34 34 H 1.09001 * 109.47271 * 300.00484 * 21 20 19 35 35 H 1.09008 * 109.46892 * 60.00220 * 21 20 19 36 36 H 1.09001 * 109.47518 * 300.00470 * 22 21 20 37 37 H 1.08999 * 109.46769 * 60.00237 * 22 21 20 38 38 H 0.96996 * 119.99907 * 0.02562 * 24 23 22 39 39 H 0.96994 * 120.00136 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2505 1.6178 0.0000 4 1 2.4979 2.0465 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5480 1.4403 0.6999 7 6 2.0100 -1.2010 -0.0005 8 1 1.4701 -2.1363 -0.0005 9 16 3.7720 -1.2009 -0.0012 10 6 4.0780 -2.9292 -0.1559 11 6 3.0238 -3.8327 -0.0915 12 6 3.2671 -5.1866 -0.2126 13 6 4.5584 -5.6486 -0.3987 14 6 5.6136 -4.7583 -0.4652 15 6 5.3810 -3.3964 -0.3449 16 7 6.4480 -2.4934 -0.4114 17 6 7.4961 -2.7470 -1.2198 18 8 7.5496 -3.7917 -1.8337 19 6 8.6016 -1.7326 -1.3609 20 16 9.8569 -2.3622 -2.5091 21 6 11.0818 -1.0247 -2.5480 22 6 12.2261 -1.4082 -3.4883 23 6 13.2440 -0.2974 -3.5201 24 7 14.3461 -0.4150 -4.2869 25 8 13.0709 0.7029 -2.8564 26 1 -0.4850 0.8400 0.0004 27 1 2.0147 -3.4761 0.0532 28 1 2.4469 -5.8874 -0.1628 29 1 4.7421 -6.7086 -0.4932 30 1 6.6201 -5.1237 -0.6064 31 1 6.4332 -1.6849 0.1244 32 1 8.1913 -0.7993 -1.7466 33 1 9.0574 -1.5541 -0.3870 34 1 10.6092 -0.1095 -2.9045 35 1 11.4754 -0.8632 -1.5443 36 1 12.6986 -2.3234 -3.1313 37 1 11.8329 -1.5701 -4.4919 38 1 14.4840 -1.2145 -4.8186 39 1 15.0010 0.3001 -4.3077 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600613176.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:36 Heat of formation + Delta-G solvation = -75.315872 kcal Electronic energy + Delta-G solvation = -22990.907632 eV Core-core repulsion = 19342.685891 eV Total energy + Delta-G solvation = -3648.221742 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 4.61 seconds Orbital eigenvalues (eV) -41.49112 -40.49657 -39.28856 -35.87652 -34.78745 -34.70356 -33.64800 -32.08153 -31.87692 -29.58370 -28.04102 -25.90935 -24.07636 -23.63716 -21.70627 -21.27507 -20.27138 -18.60256 -18.30391 -18.22360 -17.90652 -17.65559 -17.21150 -16.96188 -16.72133 -16.60621 -15.73991 -15.63683 -15.16298 -15.11470 -15.08789 -14.73741 -14.40876 -14.15728 -13.71316 -13.62115 -13.55251 -13.21733 -13.11448 -12.97169 -12.82319 -12.38450 -12.36416 -11.64687 -11.37508 -11.37455 -11.10956 -10.96033 -10.94907 -10.88469 -10.65236 -10.53017 -9.31130 -8.69314 -8.57509 -8.56926 -6.31697 0.25341 0.35749 0.46772 0.99614 1.28957 1.38355 1.45498 1.46981 1.59154 1.62243 2.04249 2.15738 2.50517 2.71460 2.77812 2.90907 3.50515 3.70449 3.96193 4.00239 4.03234 4.16124 4.22529 4.25714 4.46124 4.58608 4.61416 4.62749 4.72687 4.89477 4.98951 5.29906 5.35353 5.54659 5.64859 5.68340 5.90044 6.08068 6.20258 6.30096 6.45496 6.82980 6.96860 7.34235 8.53781 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.012314 B = 0.002564 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.381093 B =10917.361772 C =13005.886895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.222 1.222 7 C -0.552 4.552 8 H 0.082 0.918 9 S -0.045 6.045 10 C -0.109 4.109 11 C -0.139 4.139 12 C -0.114 4.114 13 C -0.122 4.122 14 C -0.111 4.111 15 C 0.130 3.870 16 N -0.654 5.654 17 C 0.530 3.470 18 O -0.537 6.537 19 C -0.120 4.120 20 S -0.210 6.210 21 C -0.082 4.082 22 C -0.120 4.120 23 C 0.521 3.479 24 N -0.836 5.836 25 O -0.595 6.595 26 H 0.279 0.721 27 H 0.118 0.882 28 H 0.143 0.857 29 H 0.154 0.846 30 H 0.141 0.859 31 H 0.419 0.581 32 H 0.132 0.868 33 H 0.143 0.857 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.420 0.580 39 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.041 -4.210 -5.769 27.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.161 4.161 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.145 1.145 7 C -0.698 4.698 8 H 0.099 0.901 9 S 0.204 5.796 10 C -0.225 4.225 11 C -0.164 4.164 12 C -0.134 4.134 13 C -0.144 4.144 14 C -0.132 4.132 15 C 0.028 3.972 16 N -0.300 5.300 17 C 0.317 3.683 18 O -0.413 6.413 19 C -0.270 4.270 20 S 0.017 5.983 21 C -0.231 4.231 22 C -0.161 4.161 23 C 0.305 3.695 24 N -0.400 5.400 25 O -0.476 6.476 26 H 0.089 0.911 27 H 0.136 0.864 28 H 0.161 0.839 29 H 0.172 0.828 30 H 0.159 0.841 31 H 0.257 0.743 32 H 0.150 0.850 33 H 0.161 0.839 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.251 0.749 39 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 27.369 -4.088 -6.186 28.356 hybrid contribution -1.347 1.268 0.622 1.951 sum 26.022 -2.820 -5.564 26.759 Atomic orbital electron populations 1.70018 1.07588 1.29369 1.47599 1.25712 0.95463 1.02546 0.92378 0.85902 0.81087 0.79035 0.80412 1.18499 1.18543 1.14530 1.22887 0.90070 0.97684 1.59205 0.90064 1.82033 1.07996 1.01254 1.88318 1.22007 0.94724 0.99178 1.06562 1.21394 0.98558 0.94030 1.02419 1.21299 0.98129 0.94240 0.99748 1.21289 0.91554 1.00619 1.00961 1.21226 1.00823 0.90509 1.00691 1.17282 0.85024 0.90042 1.04805 1.43266 1.17882 1.24759 1.44055 1.20254 0.82478 0.87640 0.77879 1.90706 1.77695 1.26976 1.45955 1.23466 0.96467 1.01459 1.05643 1.87388 1.22057 1.28490 1.60386 1.23176 0.96937 0.98887 1.04050 1.21320 0.93631 0.98335 1.02832 1.20767 0.83041 0.87543 0.78116 1.43723 1.23254 1.25163 1.47896 1.90762 1.78091 1.33620 1.45124 0.91121 0.86395 0.83931 0.82812 0.84146 0.74277 0.84974 0.83918 0.89787 0.89307 0.85779 0.86093 0.74864 0.76121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.35 13.97 21.63 0.30 -53.05 16 2 C 0.05 2.52 5.50 84.83 0.47 2.98 16 3 Si 0.92 40.61 27.73 68.60 1.90 42.51 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 6 H -0.22 -9.09 6.74 99.48 0.67 -8.42 16 7 C -0.55 -30.63 9.62 67.93 0.65 -29.98 16 8 H 0.08 4.87 5.06 -2.91 -0.01 4.86 16 9 S -0.04 -2.03 18.50 -56.49 -1.05 -3.08 16 10 C -0.11 -4.60 6.12 22.81 0.14 -4.46 16 11 C -0.14 -5.88 9.25 22.42 0.21 -5.67 16 12 C -0.11 -3.86 10.03 22.27 0.22 -3.63 16 13 C -0.12 -3.73 10.04 22.30 0.22 -3.51 16 14 C -0.11 -3.73 8.69 22.37 0.19 -3.53 16 15 C 0.13 4.74 6.32 38.31 0.24 4.98 16 16 N -0.65 -19.60 5.02 -303.00 -1.52 -21.12 16 17 C 0.53 14.85 7.69 87.66 0.67 15.53 16 18 O -0.54 -18.38 13.28 -3.05 -0.04 -18.42 16 19 C -0.12 -2.32 6.43 71.24 0.46 -1.86 16 20 S -0.21 -4.22 20.87 -56.49 -1.18 -5.40 16 21 C -0.08 -1.23 5.23 71.98 0.38 -0.85 16 22 C -0.12 -1.18 5.71 29.85 0.17 -1.01 16 23 C 0.52 6.84 8.10 87.66 0.71 7.55 16 24 N -0.84 -4.19 8.87 -173.53 -1.54 -5.73 16 25 O -0.60 -13.92 16.82 -3.04 -0.05 -13.97 16 26 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 27 H 0.12 5.63 4.95 -2.91 -0.01 5.62 16 28 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 29 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 30 H 0.14 4.56 6.20 -2.91 -0.02 4.54 16 31 H 0.42 10.99 7.96 -92.71 -0.74 10.25 16 32 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.08 1.39 8.10 -2.39 -0.02 1.37 16 35 H 0.09 1.37 8.10 -2.39 -0.02 1.35 16 36 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.42 -0.67 8.83 -92.71 -0.82 -1.49 16 39 H 0.41 1.69 8.93 -92.71 -0.83 0.87 16 Total: -1.00 -76.58 359.87 0.28 -76.30 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -1.28 Total: 25.41 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 4.74 Total: -23.46 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -2.76 Total: -79.90 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.09 Total: -32.39 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 1.90 Total: 42.51 kcal Atomic # 16 Polarization: -6.25 SS G_CDS: -2.22 Total: -8.47 kcal Total: -76.58 0.28 -76.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600613176.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.983 kcal (2) G-P(sol) polarization free energy of solvation -76.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.62 seconds