Wall clock time and date at job start Sat Apr 11 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.53000 * 109.47242 * 125.29424 * 14 13 12 16 16 C 1.50704 * 109.47127 * 179.97438 * 15 14 13 17 17 C 1.38215 * 119.98811 * 269.72531 * 16 15 14 18 18 C 1.38363 * 120.01493 * 179.76897 * 17 16 15 19 19 Cl 1.73598 * 120.01077 * 180.27763 * 18 17 16 20 20 C 1.38331 * 119.98120 * 0.48468 * 18 17 16 21 21 C 1.38331 * 119.97823 * 359.76772 * 20 18 17 22 22 Cl 1.73598 * 120.01122 * 179.97438 * 21 20 18 23 23 C 1.38217 * 119.98499 * 90.00203 * 16 15 14 24 24 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 25 25 N 1.28636 * 110.17920 * 359.73997 * 24 13 12 26 26 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 28 28 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 29 29 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 30 30 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 31 31 H 1.08997 * 109.47170 * 245.29472 * 14 13 12 32 32 H 1.08999 * 109.46977 * 5.29533 * 14 13 12 33 33 H 1.08997 * 109.47077 * 300.00104 * 15 14 13 34 34 H 1.08999 * 109.47046 * 60.00151 * 15 14 13 35 35 H 1.08001 * 119.99382 * 359.97438 * 17 16 15 36 36 H 1.08006 * 120.01222 * 179.78965 * 20 18 17 37 37 H 1.08005 * 119.99729 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.6204 -5.4811 -1.0649 13 7 -0.2302 -6.4183 -0.5863 14 6 -0.9688 -7.3968 -1.3882 15 6 -0.6745 -8.8064 -0.8710 16 6 -1.4349 -9.8129 -1.6956 17 6 -2.7079 -10.1957 -1.3171 18 6 -3.4083 -11.1162 -2.0764 19 17 -5.0100 -11.5914 -1.6049 20 6 -2.8303 -11.6609 -3.2089 21 6 -1.5542 -11.2813 -3.5844 22 17 -0.8277 -11.9649 -5.0052 23 6 -0.8567 -10.3572 -2.8269 24 7 -0.2825 -6.2992 0.6943 25 7 0.4867 -5.3442 1.0829 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 2.6849 -3.7190 -0.8822 29 1 2.6842 -3.7101 0.8977 30 1 0.8827 -5.3105 -2.0986 31 1 -2.0376 -7.1973 -1.3110 32 1 -0.6593 -7.3202 -2.4305 33 1 0.3942 -9.0059 -0.9482 34 1 -0.9841 -8.8830 0.1713 35 1 -3.1573 -9.7737 -0.4303 36 1 -3.3753 -12.3820 -3.8001 37 1 0.1397 -10.0608 -3.1199 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603246241.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:55 Heat of formation + Delta-G solvation = 118.727440 kcal Electronic energy + Delta-G solvation = -22620.977316 eV Core-core repulsion = 18873.542167 eV Total energy + Delta-G solvation = -3747.435148 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.055 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.96921 -40.25921 -37.30943 -37.11206 -35.83874 -34.66683 -32.88561 -31.80213 -31.27106 -29.95917 -29.24125 -25.79968 -25.25590 -23.45102 -22.83008 -22.17114 -21.48900 -20.39007 -17.89956 -17.42758 -16.92943 -16.78110 -16.29569 -16.08123 -15.04526 -14.74442 -14.64353 -14.50046 -14.37447 -13.93555 -13.53680 -13.32431 -13.02274 -12.89605 -12.65252 -12.51699 -12.48956 -12.02534 -11.72092 -11.54935 -11.52047 -11.46919 -11.22485 -10.88204 -10.78557 -10.44119 -10.12363 -9.93060 -9.72378 -9.44317 -9.34664 -8.87408 -8.83540 -6.90690 -5.72705 -3.02425 0.35414 0.36849 1.24138 1.69542 1.82643 2.37555 2.77913 2.91080 3.47199 3.51380 3.52731 3.91576 4.14880 4.30595 4.34740 4.36672 4.53362 4.59354 4.64246 4.72794 4.77664 4.92719 5.10513 5.30073 5.37940 5.42478 5.45367 5.49170 5.64227 5.69663 5.85170 5.89949 6.18748 6.41210 6.66308 6.74682 6.79793 7.71694 8.44637 8.83433 9.56220 10.12064 10.47914 11.50011 Molecular weight = 340.06amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.001814 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.755717 B =15430.394641 C =16130.218569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.240 4.240 8 H 0.073 0.927 9 N -0.726 5.726 10 C 0.232 3.768 11 C -0.005 4.005 12 C -0.043 4.043 13 N -0.301 5.301 14 C 0.124 3.876 15 C -0.092 4.092 16 C -0.056 4.056 17 C -0.097 4.097 18 C -0.021 4.021 19 Cl -0.054 7.054 20 C -0.104 4.104 21 C -0.022 4.022 22 Cl -0.055 7.055 23 C -0.100 4.100 24 N -0.096 5.096 25 N -0.253 5.253 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.189 0.811 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.291 -29.690 -10.113 31.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.371 5.371 10 C 0.103 3.897 11 C -0.143 4.143 12 C -0.193 4.193 13 N -0.096 5.096 14 C 0.003 3.997 15 C -0.131 4.131 16 C -0.057 4.057 17 C -0.116 4.116 18 C -0.048 4.048 19 Cl -0.025 7.025 20 C -0.123 4.123 21 C -0.049 4.049 22 Cl -0.026 7.026 23 C -0.119 4.119 24 N -0.075 5.075 25 N -0.120 5.120 26 H 0.065 0.935 27 H 0.219 0.781 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.206 0.794 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.873 -30.220 -8.907 32.246 hybrid contribution 0.299 1.093 -1.275 1.706 sum -6.574 -29.127 -10.182 31.547 Atomic orbital electron populations 1.69675 1.05179 1.25766 1.57466 1.24767 0.95533 0.97747 1.02918 0.86225 0.78456 0.83361 0.77862 1.21244 1.21747 1.21176 1.19188 0.91064 0.83837 1.43042 0.90929 1.42308 1.05978 0.99265 1.89528 1.18949 0.90070 0.81408 0.99246 1.22481 1.02588 1.00803 0.88420 1.23433 0.98748 0.95099 1.02058 1.47233 1.30995 1.24497 1.06830 1.21967 0.97609 0.85702 0.94453 1.20880 1.01182 0.90470 1.00519 1.19514 0.93841 0.97390 0.94998 1.21167 0.93885 0.96367 1.00195 1.20741 0.88349 0.99227 0.96494 1.98410 1.21558 1.90986 1.91510 1.20945 0.94012 1.00989 0.96398 1.20726 0.94018 0.98585 0.91534 1.98408 1.82638 1.83791 1.37723 1.21125 1.00850 0.95829 0.94059 1.78215 1.19731 1.17025 0.92559 1.75103 1.06496 1.04120 1.26322 0.93465 0.78110 0.94482 0.94345 0.79421 0.88198 0.87531 0.89178 0.88148 0.83727 0.83743 0.83920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -19.02 5.59 -61.09 -0.34 -19.36 16 10 C 0.23 4.86 6.82 -5.19 -0.04 4.82 16 11 C -0.01 -0.09 6.61 -82.78 -0.55 -0.64 16 12 C -0.04 -0.62 11.50 -17.04 -0.20 -0.82 16 13 N -0.30 -3.92 3.44 -61.27 -0.21 -4.13 16 14 C 0.12 0.96 6.44 -4.05 -0.03 0.93 16 15 C -0.09 -0.59 5.47 -27.88 -0.15 -0.75 16 16 C -0.06 -0.33 5.13 -104.64 -0.54 -0.86 16 17 C -0.10 -0.60 9.48 -39.54 -0.38 -0.98 16 18 C -0.02 -0.14 6.32 -39.50 -0.25 -0.39 16 19 Cl -0.05 -0.36 28.96 -51.86 -1.50 -1.86 16 20 C -0.10 -0.64 9.62 -39.51 -0.38 -1.02 16 21 C -0.02 -0.14 6.32 -39.50 -0.25 -0.39 16 22 Cl -0.05 -0.35 28.96 -51.86 -1.50 -1.85 16 23 C -0.10 -0.57 9.48 -39.54 -0.38 -0.94 16 24 N -0.10 -1.61 12.91 60.35 0.78 -0.83 16 25 N -0.25 -5.06 12.41 33.29 0.41 -4.65 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.39 10.90 7.66 -40.82 -0.31 10.59 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.19 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.11 0.56 8.07 -51.93 -0.42 0.14 16 33 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 34 H 0.10 0.73 8.06 -51.93 -0.42 0.32 16 35 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 37 H 0.14 0.63 8.06 -52.48 -0.42 0.20 16 LS Contribution 359.56 15.07 5.42 5.42 Total: -1.00 -34.04 359.56 -8.69 -42.73 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.08 Total: 3.57 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -3.37 Total: -8.47 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 1.36 Total: -57.05 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -3.00 Total: -3.71 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.04 -8.69 -42.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603246241.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.454 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds