Wall clock time and date at job start Sat Apr 11 2020 05:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.62552 * 2 1 4 4 C 1.53237 * 109.62781 * 239.61075 * 2 1 3 5 5 N 1.46901 * 109.33813 * 186.26729 * 4 2 1 6 6 C 1.39051 * 111.00079 * 187.25637 * 5 4 2 7 7 C 1.39435 * 120.15135 * 179.97438 * 6 5 4 8 8 C 1.38674 * 117.89454 * 179.97438 * 7 6 5 9 9 Br 1.89095 * 120.99213 * 179.72493 * 8 7 6 10 10 C 1.38936 * 118.01126 * 359.97438 * 8 7 6 11 11 N 1.31763 * 120.00102 * 0.02562 * 10 8 7 12 12 N 1.28350 * 122.29432 * 359.97438 * 11 10 8 13 13 C 1.46893 * 111.27143 * 63.10576 * 5 4 2 14 14 C 1.53242 * 109.34176 * 296.89830 * 13 5 4 15 15 H 1.08993 * 109.63237 * 173.54039 * 14 13 5 16 16 C 1.53009 * 109.78529 * 294.02370 * 14 13 5 17 17 N 1.47077 * 108.52145 * 53.82685 * 14 13 5 18 18 C 1.36936 * 120.88012 * 128.84278 * 17 14 13 19 19 H 1.08000 * 119.99409 * 206.15991 * 18 17 14 20 20 C 1.38807 * 120.00326 * 26.16132 * 18 17 14 21 21 N 1.31617 * 119.99713 * 17.48266 * 20 18 17 22 22 Si 1.86802 * 119.99906 * 197.48975 * 20 18 17 23 23 H 1.48494 * 109.47198 * 89.99923 * 22 20 18 24 24 H 1.48499 * 109.46768 * 209.99708 * 22 20 18 25 25 H 1.48497 * 109.47285 * 329.99243 * 22 20 18 26 26 H 1.09008 * 109.47062 * 180.38639 * 1 2 3 27 27 H 1.08998 * 109.47231 * 300.38660 * 1 2 3 28 28 H 1.09002 * 109.47083 * 60.39189 * 1 2 3 29 29 H 1.08993 * 109.49369 * 66.30828 * 4 2 1 30 30 H 1.09000 * 109.51701 * 306.24017 * 4 2 1 31 31 H 1.07997 * 121.05475 * 359.95043 * 7 6 5 32 32 H 1.07999 * 119.99901 * 179.97438 * 10 8 7 33 33 H 1.09000 * 109.49610 * 56.85317 * 13 5 4 34 34 H 1.08997 * 109.49881 * 176.93515 * 13 5 4 35 35 H 1.08996 * 109.46782 * 179.12457 * 16 14 13 36 36 H 1.08997 * 109.47307 * 299.12301 * 16 14 13 37 37 H 1.08996 * 109.46690 * 59.12689 * 16 14 13 38 38 H 0.97003 * 119.99580 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0448 -0.7301 -1.2450 5 7 3.5059 -0.8583 -1.1645 6 6 4.0274 -1.3690 -2.3480 7 6 5.4011 -1.5684 -2.4796 8 6 5.8704 -2.0805 -3.6799 9 35 7.7172 -2.3782 -3.9557 10 6 4.9435 -2.3631 -4.6755 11 7 3.6617 -2.1430 -4.4641 12 7 3.2210 -1.6693 -3.3556 13 6 3.9062 -1.6805 -0.0149 14 6 3.4677 -0.9894 1.2806 15 1 3.6588 -1.6465 2.1290 16 6 4.2427 0.3178 1.4582 17 7 2.0279 -0.7022 1.1927 18 6 1.1738 -1.0780 2.1948 19 1 0.1318 -1.2595 1.9764 20 6 1.6471 -1.2257 3.4913 21 7 2.7981 -0.6889 3.8367 22 14 0.6506 -2.1865 4.7456 23 1 1.0476 -3.6167 4.7027 24 1 0.9069 -1.6421 6.1033 25 1 -0.7949 -2.0642 4.4282 26 1 -0.3633 -1.0277 0.0069 27 1 -0.3633 0.5198 0.8865 28 1 -0.3633 0.5077 -0.8935 29 1 1.7781 -0.1620 -2.1361 30 1 1.5950 -1.7216 -1.2977 31 1 6.0783 -1.3313 -1.6724 32 1 5.2737 -2.7626 -5.6230 33 1 3.4305 -2.6588 -0.0841 34 1 4.9894 -1.8017 -0.0138 35 1 3.9158 0.8125 2.3728 36 1 5.3091 0.1020 1.5232 37 1 4.0552 0.9701 0.6053 38 1 3.1290 -0.7924 4.7427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603405507.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:02 Heat of formation + Delta-G solvation = 105.952076 kcal Electronic energy + Delta-G solvation = -22308.960435 eV Core-core repulsion = 19041.667550 eV Total energy + Delta-G solvation = -3267.292886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.059 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.25892 -38.72825 -35.38727 -34.05635 -32.73783 -31.95137 -30.55034 -30.36488 -27.88356 -26.56510 -25.36383 -24.35046 -23.72681 -22.08988 -20.82128 -18.79972 -17.78776 -17.28689 -16.62651 -16.07721 -15.24967 -15.09877 -14.41222 -14.09712 -13.99067 -13.77312 -13.48871 -13.38464 -12.96020 -12.11137 -11.94860 -11.72633 -11.54038 -11.42924 -11.11487 -11.04698 -10.94032 -10.70248 -10.69047 -10.57046 -10.40167 -10.14839 -10.02530 -9.81098 -9.70529 -9.55114 -9.41524 -8.57477 -8.15587 -6.76842 -5.84479 -3.25607 0.45059 0.84562 1.03768 3.28067 3.34342 3.42591 3.42695 3.61968 4.18868 4.31761 4.43372 4.61671 4.73971 5.14608 5.18620 5.29965 5.53067 5.59504 5.66186 5.80043 5.87516 5.95270 6.05939 6.14524 6.26242 6.35398 6.48123 6.65648 6.80283 6.88873 6.91854 7.04673 7.15406 7.22739 7.53786 7.69767 7.84191 8.35735 8.65427 9.15022 9.76671 10.33359 11.23517 Molecular weight = 340.06amu Principal moments of inertia in cm(-1) A = 0.020713 B = 0.003303 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.499027 B = 8475.607085 C = 9250.462398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.036 0.964 4 C 0.055 3.945 5 N -0.455 5.455 6 C 0.277 3.723 7 C -0.106 4.106 8 C -0.075 4.075 9 Br -0.018 7.018 10 C 0.025 3.975 11 N -0.208 5.208 12 N -0.277 5.277 13 C 0.042 3.958 14 C 0.197 3.803 15 H 0.106 0.894 16 C -0.139 4.139 17 N -0.585 5.585 18 C -0.251 4.251 19 H 0.074 0.926 20 C 0.003 3.997 21 N -0.899 5.899 22 Si 0.900 3.100 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.280 1.280 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.160 0.840 32 H 0.175 0.825 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.024 0.976 37 H 0.031 0.969 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.847 -2.680 -14.841 18.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.061 3.939 3 H 0.053 0.947 4 C -0.073 4.073 5 N -0.171 5.171 6 C 0.037 3.963 7 C -0.140 4.140 8 C -0.166 4.166 9 Br 0.067 6.933 10 C -0.144 4.144 11 N -0.049 5.049 12 N -0.126 5.126 13 C -0.085 4.085 14 C 0.090 3.910 15 H 0.123 0.877 16 C -0.198 4.198 17 N -0.308 5.308 18 C -0.380 4.380 19 H 0.092 0.908 20 C -0.195 4.195 21 N -0.544 5.544 22 Si 0.730 3.270 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.205 1.205 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.178 0.822 32 H 0.192 0.808 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.043 0.957 37 H 0.051 0.949 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.160 -2.350 -15.170 17.876 hybrid contribution 0.567 -0.945 1.141 1.586 sum 9.727 -3.295 -14.029 17.387 Atomic orbital electron populations 1.21774 0.95337 1.01672 1.00672 1.20549 0.93008 0.94227 0.86119 0.94652 1.22767 0.82795 1.01297 1.00458 1.58962 1.14454 1.44104 0.99587 1.21879 0.90747 0.89312 0.94345 1.22013 0.95855 0.98485 0.97638 1.22986 0.93284 1.03029 0.97261 1.96797 1.04724 1.95060 1.96764 1.24131 0.90208 1.00257 0.99834 1.72890 1.13036 1.06206 1.12773 1.73238 1.30623 1.11353 0.97391 1.23246 0.99630 0.94706 0.90879 1.20478 0.83362 0.95627 0.91559 0.87684 1.22013 0.96758 0.99143 1.01893 1.44316 1.03244 1.65050 1.18168 1.19229 0.92960 1.39318 0.86472 0.90836 1.24987 0.97697 1.00120 0.96701 1.69993 1.21157 1.44949 1.18311 0.86323 0.79766 0.79975 0.80913 1.21612 1.21837 1.20515 0.92676 0.91607 0.93874 0.90409 0.93038 0.82214 0.80812 0.93711 0.91109 0.90231 0.95727 0.94943 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.94 37.16 0.29 -2.18 16 2 C 0.17 3.36 3.25 -67.49 -0.22 3.14 16 3 H 0.04 0.75 7.63 -51.93 -0.40 0.36 16 4 C 0.05 0.99 4.13 -3.70 -0.02 0.98 16 5 N -0.46 -7.92 4.16 -172.77 -0.72 -8.64 16 6 C 0.28 4.44 6.47 -154.77 -1.00 3.43 16 7 C -0.11 -1.41 9.06 -38.97 -0.35 -1.77 16 8 C -0.07 -0.88 6.28 -39.16 -0.25 -1.12 16 9 Br -0.02 -0.17 33.79 -68.01 -2.30 -2.47 16 10 C 0.03 0.30 11.10 -17.32 -0.19 0.11 16 11 N -0.21 -3.16 11.49 30.59 0.35 -2.81 16 12 N -0.28 -4.65 9.86 31.23 0.31 -4.35 16 13 C 0.04 0.75 4.82 -3.70 -0.02 0.74 16 14 C 0.20 4.24 2.34 -67.49 -0.16 4.09 16 15 H 0.11 2.57 6.10 -51.93 -0.32 2.26 16 16 C -0.14 -2.91 8.97 37.16 0.33 -2.58 16 17 N -0.58 -13.43 2.73 -157.00 -0.43 -13.85 16 18 C -0.25 -6.33 8.74 -15.06 -0.13 -6.46 16 19 H 0.07 1.84 6.17 -52.49 -0.32 1.51 16 20 C 0.00 0.09 4.93 -17.43 -0.09 0.00 16 21 N -0.90 -23.93 9.77 55.49 0.54 -23.39 16 22 Si 0.90 20.74 29.59 -169.99 -5.03 15.71 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H 0.05 1.01 7.56 -51.92 -0.39 0.62 16 27 H 0.06 1.27 7.58 -51.93 -0.39 0.87 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.35 7.66 -51.93 -0.40 0.95 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.16 1.92 7.21 -52.49 -0.38 1.54 16 32 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.11 6.69 -51.93 -0.35 0.76 16 35 H 0.08 1.92 6.89 -51.93 -0.36 1.56 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.03 0.66 7.10 -51.93 -0.37 0.29 16 38 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 320.29 15.07 4.83 4.83 Total: -1.00 -26.83 320.29 -9.16 -35.99 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -4.92 Total: 0.60 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -1.79 Total: -1.62 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.05 Total: -53.04 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Atomic # 35 Polarization: -0.17 SS G_CDS: -2.30 Total: -2.47 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.83 -9.16 -35.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603405507.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.945 kcal (2) G-P(sol) polarization free energy of solvation -26.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds