Wall clock time and date at job start Sat Apr 11 2020 05:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09011 * 109.46877 * 2 1 4 4 C 1.50703 * 109.47443 * 240.00594 * 2 1 3 5 5 O 1.21290 * 119.99650 * 265.00467 * 4 2 1 6 6 N 1.34773 * 120.00408 * 84.99388 * 4 2 1 7 7 C 1.37089 * 120.00339 * 180.02562 * 6 4 2 8 8 H 1.08005 * 119.99835 * 17.50193 * 7 6 4 9 9 C 1.38951 * 120.00473 * 197.50435 * 7 6 4 10 10 N 1.31413 * 119.99840 * 19.86296 * 9 7 6 11 11 Si 1.86797 * 120.00234 * 199.86619 * 9 7 6 12 12 H 1.48503 * 109.47181 * 85.41130 * 11 9 7 13 13 H 1.48502 * 109.47118 * 205.40991 * 11 9 7 14 14 H 1.48502 * 109.47164 * 325.41354 * 11 9 7 15 15 C 1.46506 * 119.99868 * 0.02562 * 6 4 2 16 16 C 1.47206 * 109.46870 * 84.38753 * 15 6 4 17 17 N 4.00669 * 125.28868 * 329.37257 * 2 1 3 18 18 S 1.81393 * 109.47156 * 120.00176 * 2 1 3 19 19 O 1.42097 * 110.54624 * 56.62824 * 18 2 1 20 20 O 1.42103 * 110.54292 * 193.37593 * 18 2 1 21 21 C 1.76201 * 104.45045 * 304.99995 * 18 2 1 22 22 C 1.38241 * 119.97253 * 269.72692 * 21 18 2 23 23 C 1.38205 * 120.02240 * 179.72614 * 22 21 18 24 24 C 1.38457 * 119.97257 * 0.57100 * 23 22 21 25 25 F 1.35102 * 120.02568 * 179.68523 * 24 23 22 26 26 C 1.38460 * 119.95120 * 359.69940 * 24 23 22 27 27 C 1.38197 * 119.97197 * 0.02562 * 26 24 23 28 28 H 1.08998 * 109.47527 * 299.99949 * 1 2 3 29 29 H 1.08998 * 109.47098 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47285 * 59.99912 * 1 2 3 31 31 H 0.97003 * 120.00228 * 180.02562 * 10 9 7 32 32 H 1.08999 * 109.47385 * 204.38540 * 15 6 4 33 33 H 1.09000 * 109.47254 * 324.39245 * 15 6 4 34 34 H 1.07998 * 119.99038 * 359.97438 * 22 21 18 35 35 H 1.08003 * 120.01487 * 180.25282 * 23 22 21 36 36 H 1.07998 * 120.01535 * 180.02562 * 26 24 23 37 37 H 1.07995 * 119.98744 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.3208 -1.8871 -1.1761 6 7 2.1610 -0.0379 -2.3915 7 6 2.6176 -0.6842 -3.5110 8 1 2.6064 -1.7633 -3.5538 9 6 3.0948 0.0490 -4.5905 10 7 3.4770 1.2948 -4.4211 11 14 3.1929 -0.7361 -6.2826 12 1 1.8813 -0.6040 -6.9664 13 1 4.2402 -0.0542 -7.0848 14 1 3.5351 -2.1743 -6.1419 15 6 1.8130 1.3837 -2.4571 16 6 2.9603 2.1908 -2.0108 17 7 3.8446 2.8142 -1.6662 18 16 2.1346 -0.8551 1.4810 19 8 1.6108 -2.1745 1.5439 20 8 3.5213 -0.6079 1.6684 21 6 1.3585 -0.0151 2.8214 22 6 1.9817 1.0690 3.4108 23 6 1.3713 1.7321 4.4585 24 6 0.1405 1.3029 4.9255 25 9 -0.4542 1.9465 5.9538 26 6 -0.4801 0.2135 4.3381 27 6 0.1295 -0.4445 3.2868 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 3.8098 1.8069 -5.1747 32 1 1.5597 1.6488 -3.4836 33 1 0.9579 1.5787 -1.8098 34 1 2.9441 1.4003 3.0498 35 1 1.8565 2.5816 4.9162 36 1 -1.4403 -0.1219 4.7013 37 1 -0.3542 -1.2945 2.8288 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610108442.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:14 Heat of formation + Delta-G solvation = -74.140821 kcal Electronic energy + Delta-G solvation = -27460.686396 eV Core-core repulsion = 23246.302432 eV Total energy + Delta-G solvation = -4214.383964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.073 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -49.38250 -39.30115 -39.24375 -36.89017 -36.07380 -35.64483 -34.58135 -33.33109 -31.76530 -31.54619 -30.95438 -27.67621 -25.69527 -24.03647 -23.44792 -23.41105 -20.15884 -18.88136 -18.21613 -18.14333 -17.54700 -16.87344 -16.78081 -16.43437 -16.10888 -15.92270 -15.26689 -14.98040 -14.79476 -14.29728 -14.14441 -13.96448 -13.63364 -13.52442 -13.29185 -13.25998 -12.93585 -12.76963 -12.42118 -11.99733 -11.91376 -11.78396 -11.74885 -11.69075 -11.46138 -11.43196 -11.27734 -10.92684 -10.72005 -10.57334 -10.49687 -10.32950 -9.53035 -9.46874 -9.42971 -9.02349 -8.28293 -6.69274 -4.20489 0.06343 0.45442 0.83130 2.91342 2.95326 3.10690 3.15052 3.18234 3.27998 3.52145 3.76374 3.78201 3.89488 4.06779 4.15011 4.38663 4.43587 4.48807 4.68141 4.79554 4.87147 4.97324 5.01338 5.15520 5.23704 5.29010 5.49688 5.53045 5.62622 5.63943 5.73059 5.76217 5.83835 6.07815 6.32879 6.40910 7.30386 7.57218 8.02913 8.55897 8.73383 8.93715 9.40492 10.36136 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.021034 B = 0.003477 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.843383 B = 8051.654590 C = 8559.306995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.597 4.597 3 H 0.142 0.858 4 C 0.469 3.531 5 O -0.561 6.561 6 N -0.418 5.418 7 C -0.318 4.318 8 H 0.116 0.884 9 C 0.035 3.965 10 N -0.872 5.872 11 Si 0.935 3.065 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.266 1.266 15 C 0.213 3.787 16 C 0.238 3.762 17 N -0.460 5.460 18 S 2.529 3.471 19 O -0.911 6.911 20 O -0.929 6.929 21 C -0.675 4.675 22 C 0.007 3.993 23 C -0.175 4.175 24 C 0.149 3.851 25 F -0.133 7.133 26 C -0.176 4.176 27 C 0.009 3.991 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.278 0.722 32 H 0.135 0.865 33 H 0.088 0.912 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.529 3.495 11.806 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.709 4.709 3 H 0.160 0.840 4 C 0.255 3.745 5 O -0.445 6.445 6 N -0.136 5.136 7 C -0.444 4.444 8 H 0.134 0.866 9 C -0.170 4.170 10 N -0.510 5.510 11 Si 0.761 3.239 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.191 1.191 15 C 0.086 3.914 16 C -0.081 4.081 17 N -0.140 5.140 18 S 2.705 3.295 19 O -0.908 6.908 20 O -0.927 6.927 21 C -0.760 4.760 22 C -0.011 4.011 23 C -0.195 4.195 24 C 0.129 3.871 25 F -0.111 7.111 26 C -0.196 4.196 27 C -0.010 4.010 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.152 0.848 33 H 0.106 0.894 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.463 3.341 12.305 15.879 hybrid contribution -0.710 0.715 -0.760 1.262 sum -10.173 4.056 11.545 15.913 Atomic orbital electron populations 1.21638 0.88254 1.04974 1.04485 1.30468 1.08604 1.14755 1.17097 0.83962 1.18634 0.85530 0.87713 0.82673 1.90720 1.55147 1.15082 1.83538 1.43478 1.55359 1.06593 1.08163 1.19892 1.40779 0.93928 0.89831 0.86630 1.25378 0.94757 0.95954 1.00898 1.69840 1.38661 1.09953 1.32552 0.85786 0.78127 0.79617 0.80408 1.19852 1.20899 1.19069 1.18949 0.88271 0.79886 1.04305 1.29212 0.94842 0.93250 0.90790 1.80919 1.09506 1.10817 1.12742 1.04899 0.74731 0.75109 0.74801 1.93530 1.80244 1.31717 1.85354 1.93555 1.28832 1.85646 1.84627 1.31073 1.08906 1.12998 1.23038 1.20922 0.98229 0.90191 0.91802 1.21286 0.95117 1.03100 0.99955 1.18001 0.91930 0.91741 0.85422 1.91539 1.83292 1.80362 1.55939 1.21278 1.02351 0.96792 0.99147 1.20905 0.91283 0.96219 0.92577 0.90906 0.89669 0.89450 0.91174 0.84777 0.89433 0.82945 0.83675 0.83637 0.82725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.68 37.15 0.32 -1.23 16 2 C -0.60 -9.58 2.44 -27.88 -0.07 -9.65 16 3 H 0.14 2.01 6.21 -51.92 -0.32 1.69 16 4 C 0.47 10.18 6.69 -10.99 -0.07 10.11 16 5 O -0.56 -14.32 15.35 -3.97 -0.06 -14.38 16 6 N -0.42 -9.24 2.60 -117.93 -0.31 -9.55 16 7 C -0.32 -7.79 9.34 -14.94 -0.14 -7.93 16 8 H 0.12 2.98 7.37 -52.48 -0.39 2.59 16 9 C 0.04 0.82 4.91 -17.47 -0.09 0.73 16 10 N -0.87 -20.81 9.37 55.50 0.52 -20.29 16 11 Si 0.93 18.70 29.60 -169.99 -5.03 13.67 16 12 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 13 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 14 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 15 C 0.21 3.91 4.79 -6.82 -0.03 3.88 16 16 C 0.24 4.96 12.62 -20.77 -0.26 4.70 16 17 N -0.46 -10.44 18.53 42.14 0.78 -9.66 16 18 S 2.53 43.05 4.18 -107.50 -0.45 42.61 16 19 O -0.91 -17.46 16.55 -62.65 -1.04 -18.49 16 20 O -0.93 -18.84 17.12 -57.54 -0.98 -19.82 16 21 C -0.68 -8.50 4.88 -39.58 -0.19 -8.69 16 22 C 0.01 0.08 9.47 -39.59 -0.37 -0.29 16 23 C -0.18 -1.72 10.03 -39.51 -0.40 -2.11 16 24 C 0.15 1.46 7.30 -39.42 -0.29 1.17 16 25 F -0.13 -1.32 17.27 2.25 0.04 -1.28 16 26 C -0.18 -1.60 10.03 -39.51 -0.40 -1.99 16 27 C 0.01 0.09 8.45 -39.59 -0.33 -0.24 16 28 H 0.07 0.59 6.58 -51.93 -0.34 0.25 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.09 0.87 6.71 -51.93 -0.35 0.52 16 31 H 0.28 6.40 8.31 -40.82 -0.34 6.06 16 32 H 0.13 2.49 6.41 -51.93 -0.33 2.15 16 33 H 0.09 1.16 5.40 -51.93 -0.28 0.88 16 34 H 0.15 1.65 7.56 -52.49 -0.40 1.25 16 35 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.16 1.37 7.57 -52.49 -0.40 0.97 16 LS Contribution 337.88 15.07 5.09 5.09 Total: -1.00 -33.82 337.88 -6.97 -40.79 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -3.21 Total: 2.87 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -2.32 Total: -11.55 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.99 Total: -39.50 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -2.08 Total: -52.70 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Atomic # 16 Polarization: 43.05 SS G_CDS: -0.45 Total: 42.61 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.82 -6.97 -40.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610108442.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.350 kcal (2) G-P(sol) polarization free energy of solvation -33.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds