Wall clock time and date at job start Sat Apr 11 2020 05:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34771 * 120.00281 * 2 1 4 4 O 1.21290 * 120.00506 * 184.37202 * 3 2 1 5 5 C 1.50701 * 120.00161 * 4.36377 * 3 2 1 6 6 H 1.09005 * 109.46387 * 40.00489 * 5 3 2 7 7 N 1.46894 * 109.47613 * 160.00184 * 5 3 2 8 8 C 1.52993 * 109.47454 * 280.00593 * 5 3 2 9 9 C 1.53004 * 109.47350 * 174.99534 * 8 5 3 10 10 C 1.50707 * 109.47086 * 180.02562 * 9 8 5 11 11 H 1.08001 * 120.00115 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99856 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00111 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 119.99876 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47229 * 90.00462 * 14 12 10 16 16 H 1.48502 * 109.47098 * 209.99914 * 14 12 10 17 17 H 1.48499 * 109.47338 * 330.00306 * 14 12 10 18 18 C 1.39965 * 119.99922 * 179.97438 * 2 1 3 19 19 C 1.38870 * 120.05940 * 294.80424 * 18 2 1 20 20 C 1.38101 * 119.93989 * 180.27432 * 19 18 2 21 21 C 1.38366 * 120.05900 * 359.51870 * 20 19 18 22 22 Br 1.89095 * 119.94024 * 180.20934 * 21 20 19 23 23 C 1.38368 * 120.11940 * 0.46143 * 21 20 19 24 24 C 1.38106 * 120.05788 * 359.79087 * 23 21 20 25 25 H 1.08997 * 109.47346 * 270.00407 * 1 2 3 26 26 H 1.08996 * 109.46776 * 30.00285 * 1 2 3 27 27 H 1.09000 * 109.47146 * 149.99949 * 1 2 3 28 28 H 1.00902 * 110.99798 * 296.05580 * 7 5 3 29 29 H 1.00900 * 110.99710 * 60.00227 * 7 5 3 30 30 H 1.08997 * 109.47267 * 294.99615 * 8 5 3 31 31 H 1.09006 * 109.47455 * 54.99467 * 8 5 3 32 32 H 1.08992 * 109.47055 * 299.99791 * 9 8 5 33 33 H 1.08995 * 109.46597 * 59.99925 * 9 8 5 34 34 H 0.96997 * 120.00327 * 179.97438 * 13 12 10 35 35 H 1.07998 * 120.03088 * 0.02562 * 19 18 2 36 36 H 1.07998 * 119.97110 * 179.72082 * 20 19 18 37 37 H 1.07999 * 119.96823 * 179.77107 * 23 21 20 38 38 H 1.08002 * 120.02606 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3492 1.1687 -0.0801 5 6 1.3888 2.4704 0.0993 6 1 0.5707 2.3652 0.8120 7 7 2.3016 3.5275 0.5543 8 6 0.8246 2.8401 -1.2739 9 6 -0.0406 4.0958 -1.1487 10 6 -0.5968 4.4595 -2.5013 11 1 -0.3576 3.8553 -3.3638 12 6 -1.4120 5.5631 -2.6373 13 7 -1.7037 6.2987 -1.5869 14 14 -2.1009 6.0144 -4.3139 15 1 -3.4065 5.3350 -4.5119 16 1 -2.2916 7.4851 -4.3912 17 1 -1.1524 5.5819 -5.3716 18 6 2.1648 -1.2121 0.0005 19 6 2.0759 -2.0662 1.0920 20 6 2.7719 -3.2589 1.0923 21 6 3.5494 -3.6080 0.0023 22 35 4.4964 -5.2448 0.0038 23 6 3.6395 -2.7591 -1.0867 24 6 2.9496 -1.5627 -1.0901 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 2.6379 3.3383 1.4867 29 1 3.0693 3.6443 -0.0900 30 1 1.6457 3.0320 -1.9645 31 1 0.2176 2.0169 -1.6510 32 1 -0.8618 3.9039 -0.4582 33 1 0.5663 4.9189 -0.7716 34 1 -2.2769 7.0753 -1.6826 35 1 1.4662 -1.7960 1.9414 36 1 2.7067 -3.9214 1.9427 37 1 4.2500 -3.0323 -1.9347 38 1 3.0206 -0.9003 -1.9401 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723890865.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:20 Heat of formation + Delta-G solvation = -27.404154 kcal Electronic energy + Delta-G solvation = -21024.640267 eV Core-core repulsion = 17719.271870 eV Total energy + Delta-G solvation = -3305.368397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 340.053 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.85923 -39.91383 -36.91407 -36.80366 -34.83291 -32.89766 -32.22057 -31.95300 -30.14075 -28.20820 -27.64905 -25.62677 -23.96062 -23.32128 -22.00640 -20.55317 -18.79808 -18.44392 -17.97797 -17.14249 -17.08037 -16.75425 -16.45528 -15.91644 -15.57684 -15.16843 -14.81307 -14.60978 -14.36035 -14.25976 -14.06748 -13.74768 -13.44577 -13.39217 -12.82117 -12.74600 -12.55028 -12.50236 -12.26126 -11.88816 -11.73099 -11.63990 -11.32300 -11.24233 -11.01869 -10.47839 -10.33496 -10.15532 -9.73534 -9.40692 -8.12848 -6.22691 -0.14432 0.19492 0.54524 1.34023 1.42876 1.44140 1.54427 1.78533 2.44077 2.45306 3.20596 3.41142 3.66002 3.71257 3.80979 4.05119 4.08918 4.17979 4.26864 4.27239 4.43361 4.56703 4.69038 4.79968 4.83409 4.87080 4.97453 5.07674 5.24203 5.26695 5.38003 5.58771 5.76590 5.85095 5.98661 5.99984 6.15725 6.31058 6.47055 6.93511 6.95961 7.45498 8.98219 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.027915 B = 0.002177 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.816961 B =12860.012207 C =13241.105416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.571 5.571 3 C 0.491 3.509 4 O -0.567 6.567 5 C 0.090 3.910 6 H 0.115 0.885 7 N -0.817 5.817 8 C -0.085 4.085 9 C 0.041 3.959 10 C -0.542 4.542 11 H 0.055 0.945 12 C 0.003 3.997 13 N -0.929 5.929 14 Si 0.957 3.043 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.268 1.268 18 C 0.141 3.859 19 C -0.115 4.115 20 C -0.077 4.077 21 C -0.102 4.102 22 Br -0.042 7.042 23 C -0.082 4.082 24 C -0.117 4.117 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.347 0.653 29 H 0.345 0.655 30 H 0.041 0.959 31 H 0.073 0.927 32 H -0.002 1.002 33 H 0.005 0.995 34 H 0.262 0.738 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.147 0.853 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.691 -26.026 6.659 28.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.300 5.300 3 C 0.279 3.721 4 O -0.445 6.445 5 C -0.026 4.026 6 H 0.133 0.867 7 N -0.346 5.346 8 C -0.123 4.123 9 C 0.004 3.996 10 C -0.580 4.580 11 H 0.073 0.927 12 C -0.195 4.195 13 N -0.569 5.569 14 Si 0.782 3.218 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.192 1.192 18 C 0.050 3.950 19 C -0.135 4.135 20 C -0.097 4.097 21 C -0.182 4.182 22 Br 0.044 6.956 23 C -0.102 4.102 24 C -0.138 4.138 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.160 0.840 29 H 0.159 0.841 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.017 0.983 33 H 0.023 0.977 34 H 0.071 0.929 35 H 0.172 0.828 36 H 0.178 0.822 37 H 0.165 0.835 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.936 -25.942 6.597 28.220 hybrid contribution 0.145 0.308 -0.847 0.913 sum 9.081 -25.634 5.750 27.796 Atomic orbital electron populations 1.22359 0.75798 1.05246 1.04461 1.45683 1.08489 1.03211 1.72666 1.22739 0.88276 0.86947 0.74119 1.90665 1.15676 1.87732 1.50456 1.21672 0.95850 0.84763 1.00294 0.86728 1.59004 1.23969 1.43991 1.07624 1.21494 0.98632 0.99517 0.92647 1.18811 0.93306 0.92600 0.94887 1.21714 1.29355 1.11133 0.95811 0.92653 1.25859 0.96972 0.96394 1.00245 1.70095 1.37905 1.17719 1.31179 0.85577 0.78944 0.77228 0.80053 1.19594 1.21108 1.19236 1.18030 0.95662 0.86969 0.94379 1.21408 1.00712 0.94118 0.97312 1.21251 0.94364 0.96505 0.97556 1.21964 1.02738 0.94865 0.98593 1.96726 1.74100 1.25776 1.99029 1.21132 0.98425 0.92595 0.98081 1.21294 0.97893 0.96573 0.98008 0.89546 0.89738 0.88897 0.83958 0.84092 0.94008 0.90843 0.98341 0.97657 0.92949 0.82837 0.82206 0.83500 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.16 9.70 127.77 1.24 2.40 16 2 N -0.57 -13.97 2.94 -654.55 -1.92 -15.89 16 3 C 0.49 14.95 6.79 87.66 0.60 15.54 16 4 O -0.57 -20.56 15.74 -3.06 -0.05 -20.60 16 5 C 0.09 2.87 2.32 44.17 0.10 2.97 16 6 H 0.12 3.34 7.40 -2.38 -0.02 3.32 16 7 N -0.82 -26.92 8.44 -171.81 -1.45 -28.37 16 8 C -0.08 -3.26 4.46 30.59 0.14 -3.13 16 9 C 0.04 2.06 4.86 29.85 0.15 2.20 16 10 C -0.54 -29.93 9.11 25.60 0.23 -29.70 16 11 H 0.06 2.95 7.74 -2.91 -0.02 2.92 16 12 C 0.00 0.18 5.46 84.65 0.46 0.64 16 13 N -0.93 -55.56 13.29 21.45 0.28 -55.28 16 14 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 C 0.14 3.29 4.89 38.14 0.19 3.48 16 19 C -0.12 -2.09 9.82 22.39 0.22 -1.88 16 20 C -0.08 -1.25 9.78 22.27 0.22 -1.03 16 21 C -0.10 -1.87 6.23 22.33 0.14 -1.73 16 22 Br -0.04 -0.66 33.70 -20.37 -0.69 -1.35 16 23 C -0.08 -1.66 9.78 22.27 0.22 -1.44 16 24 C -0.12 -2.82 9.22 22.39 0.21 -2.62 16 25 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.08 1.86 4.68 -2.39 -0.01 1.85 16 27 H 0.09 1.42 8.05 -2.39 -0.02 1.40 16 28 H 0.35 9.80 9.06 -89.69 -0.81 8.98 16 29 H 0.35 11.72 8.58 -89.69 -0.77 10.95 16 30 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 31 H 0.07 2.57 6.08 -2.38 -0.01 2.56 16 32 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.00 0.28 7.75 -2.39 -0.02 0.26 16 34 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 38 H 0.12 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -67.81 341.67 1.82 -66.00 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.49 Total: 24.10 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 4.10 Total: -14.29 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -3.09 Total: -99.54 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.05 Total: -20.60 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 35 Polarization: -0.66 SS G_CDS: -0.69 Total: -1.35 kcal Total: -67.81 1.82 -66.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723890865.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.592 kcal (2) G-P(sol) polarization free energy of solvation -67.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds