Wall clock time and date at job start Sat Apr 11 2020 05:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99962 * 2 1 4 4 H 1.48510 * 109.47031 * 239.99817 * 3 2 1 5 5 H 1.48500 * 109.47510 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47409 * 119.99951 * 3 2 1 7 7 C 1.37872 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99656 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00365 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47045 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.46980 * 180.02562 * 10 9 7 12 12 C 1.34234 * 116.99947 * 179.97438 * 11 10 9 13 13 O 1.20822 * 120.00090 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99997 * 179.72219 * 12 11 10 15 15 S 1.80998 * 109.47038 * 179.97438 * 14 12 11 16 16 C 1.76208 * 99.99785 * 180.02562 * 15 14 12 17 17 N 1.31539 * 126.45290 * 0.02562 * 16 15 14 18 18 N 1.28418 * 110.49978 * 179.97438 * 17 16 15 19 19 N 1.28907 * 110.34116 * 0.02562 * 18 17 16 20 20 N 1.35396 * 126.44835 * 179.71744 * 16 15 14 21 21 C 1.46494 * 127.38857 * 359.97337 * 20 16 15 22 22 C 1.53001 * 109.46915 * 90.00239 * 21 20 16 23 23 F 1.39901 * 109.47339 * 60.00115 * 22 21 20 24 24 F 1.39899 * 109.47138 * 179.97438 * 22 21 20 25 25 F 1.39903 * 109.47360 * 300.00157 * 22 21 20 26 26 H 0.97002 * 119.99939 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47336 * 59.99637 * 9 7 2 28 28 H 1.08999 * 109.46911 * 299.99255 * 9 7 2 29 29 H 1.08997 * 109.47282 * 60.00186 * 10 9 7 30 30 H 1.09002 * 109.47256 * 299.99413 * 10 9 7 31 31 H 1.09001 * 109.47201 * 300.00712 * 14 12 11 32 32 H 1.09001 * 109.46880 * 60.00295 * 14 12 11 33 33 H 1.09001 * 109.47222 * 210.00057 * 21 20 16 34 34 H 1.08998 * 109.47351 * 330.00686 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5192 -4.9195 -0.0001 12 6 2.2503 -6.0453 -0.0007 13 8 3.4568 -5.9821 -0.0002 14 6 1.5661 -7.3880 0.0050 15 16 2.8127 -8.7003 0.0019 16 6 1.7652 -10.1173 0.0086 17 7 0.4499 -10.1168 0.0136 18 7 -0.0003 -11.3195 0.0170 19 7 0.9746 -12.1628 0.0151 20 7 2.1628 -11.4115 0.0036 21 6 3.5367 -11.9200 -0.0088 22 6 4.0273 -12.0988 1.4293 23 9 3.1991 -13.0090 2.0949 24 9 5.3390 -12.5849 1.4176 25 9 3.9920 -10.8664 2.0907 26 1 -0.4850 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8904 29 1 2.8718 -3.6043 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 0.9469 -7.4766 0.8976 32 1 0.9397 -7.4804 -0.8823 33 1 3.5641 -12.8802 -0.5240 34 1 4.1819 -11.2108 -0.5272 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730047777.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:23 Heat of formation + Delta-G solvation = -118.765806 kcal Electronic energy + Delta-G solvation = -26020.099863 eV Core-core repulsion = 21281.844036 eV Total energy + Delta-G solvation = -4738.255827 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.060 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.82845 -48.35561 -48.28451 -43.46441 -40.25629 -36.49914 -36.30865 -33.46072 -32.88539 -31.18727 -30.72937 -29.91275 -25.60319 -25.07530 -23.97097 -23.48006 -21.64575 -20.83127 -19.66238 -19.25824 -19.08204 -18.33932 -17.68753 -17.32978 -16.68196 -16.46301 -16.29440 -15.92420 -15.41603 -15.14038 -15.02797 -14.70436 -14.59829 -14.50118 -14.42536 -14.40383 -14.34478 -13.42468 -13.34343 -13.02029 -12.97619 -12.84137 -12.41552 -11.79412 -11.67612 -11.38602 -11.32785 -11.22227 -11.16191 -10.84993 -10.84728 -10.58185 -9.82086 -9.75987 -9.40123 -8.58899 -8.50450 -6.16367 -4.21669 -0.03664 0.13098 1.06809 1.10471 1.65617 1.85371 2.13350 2.82421 2.86763 2.95972 3.26157 3.30852 3.33391 3.37283 3.61431 4.01483 4.04505 4.32160 4.56118 4.57163 4.69260 4.74313 4.97723 5.11551 5.20302 5.87998 5.93624 6.48734 6.67135 7.43315 7.52172 7.71574 7.79944 7.88451 8.14762 8.83453 9.43242 10.94939 Molecular weight = 340.06amu Principal moments of inertia in cm(-1) A = 0.025190 B = 0.002020 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.286780 B =13854.752658 C =14640.306518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.343 6.343 12 C 0.478 3.522 13 O -0.504 6.504 14 C -0.131 4.131 15 S 0.128 5.872 16 C 0.215 3.785 17 N -0.326 5.326 18 N -0.015 5.015 19 N -0.064 5.064 20 N -0.381 5.381 21 C 0.082 3.918 22 C 0.442 3.558 23 F -0.169 7.169 24 F -0.166 7.166 25 F -0.166 7.166 26 H 0.265 0.735 27 H 0.030 0.970 28 H 0.030 0.970 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.159 0.841 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.238 -27.116 -0.528 28.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.259 6.259 12 C 0.319 3.681 13 O -0.394 6.394 14 C -0.280 4.280 15 S 0.353 5.647 16 C -0.169 4.169 17 N -0.181 5.181 18 N -0.011 5.011 19 N -0.051 5.051 20 N -0.181 5.181 21 C -0.044 4.044 22 C 0.386 3.614 23 F -0.151 7.151 24 F -0.147 7.147 25 F -0.148 7.148 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.177 0.823 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.302 -27.472 -0.497 28.704 hybrid contribution 0.198 0.942 0.243 0.993 sum 8.500 -26.531 -0.254 27.860 Atomic orbital electron populations 1.69957 1.06105 1.27244 1.49363 1.24980 0.94931 0.99426 0.94749 0.86516 0.79480 0.82399 0.78807 1.20039 1.21088 1.20026 1.20904 0.93137 0.89984 1.52738 0.92246 1.19197 0.94176 0.88808 0.99105 1.23833 0.96565 0.77897 1.01401 1.86537 1.41989 1.15413 1.81933 1.22118 0.86017 0.86436 0.73553 1.90699 1.15054 1.87782 1.45817 1.23486 1.01432 0.91143 1.11921 1.86550 1.01197 0.87349 1.89647 1.28398 0.96761 0.92380 0.99394 1.75087 1.04258 1.14752 1.23981 1.77916 1.20565 0.94478 1.08137 1.82630 0.84941 1.16011 1.21510 1.51115 1.07928 1.03706 1.55309 1.23164 0.79208 1.08099 0.93925 1.20574 0.76253 0.75116 0.89490 1.93284 1.71663 1.67324 1.82786 1.93266 1.36619 1.88047 1.96755 1.93320 1.96082 1.42366 1.83009 0.92547 0.95194 0.95173 0.91807 0.91830 0.83668 0.83724 0.82327 0.82950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -14.33 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.61 5.35 -27.88 -0.15 0.46 16 10 C 0.08 1.54 5.40 37.16 0.20 1.74 16 11 O -0.34 -6.08 10.22 -39.27 -0.40 -6.49 16 12 C 0.48 7.00 7.98 36.01 0.29 7.29 16 13 O -0.50 -8.39 15.61 -18.75 -0.29 -8.68 16 14 C -0.13 -1.34 5.83 36.01 0.21 -1.13 16 15 S 0.13 1.16 20.73 -107.50 -2.23 -1.07 16 16 C 0.21 2.08 8.02 -89.18 -0.72 1.37 16 17 N -0.33 -3.89 11.57 30.50 0.35 -3.54 16 18 N -0.02 -0.19 13.38 60.35 0.81 0.62 16 19 N -0.06 -0.70 13.93 60.35 0.84 0.14 16 20 N -0.38 -3.19 3.54 -61.31 -0.22 -3.41 16 21 C 0.08 0.33 6.34 -4.04 -0.03 0.31 16 22 C 0.44 2.73 3.29 37.16 0.12 2.85 16 23 F -0.17 -1.39 17.24 2.25 0.04 -1.35 16 24 F -0.17 -0.93 17.32 2.25 0.04 -0.89 16 25 F -0.17 -1.37 16.92 2.25 0.04 -1.33 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 30 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 31 H 0.15 1.32 8.14 -51.92 -0.42 0.90 16 32 H 0.14 1.26 8.14 -51.91 -0.42 0.84 16 33 H 0.16 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.15 0.22 7.85 -51.93 -0.41 -0.19 16 LS Contribution 342.25 15.07 5.16 5.16 Total: -1.00 -32.70 342.25 -3.54 -36.24 By element: Atomic # 1 Polarization: -3.19 SS G_CDS: -2.91 Total: -6.09 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.48 Total: -0.16 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 2.52 Total: -31.16 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.69 Total: -15.17 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.12 Total: -3.58 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.23 Total: -1.07 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.70 -3.54 -36.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730047777.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.523 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds