Wall clock time and date at job start Sat Apr 11 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86792 * 120.00023 * 2 1 4 4 H 1.48501 * 109.47217 * 270.00110 * 3 2 1 5 5 H 1.48504 * 109.47173 * 29.99831 * 3 2 1 6 6 H 1.48502 * 109.47283 * 149.99795 * 3 2 1 7 7 C 1.38654 * 119.99570 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00272 * 0.02562 * 7 2 1 9 9 O 1.34834 * 119.99707 * 180.02562 * 7 2 1 10 10 C 1.35749 * 117.00013 * 185.05824 * 9 7 2 11 11 C 1.38874 * 120.06890 * 354.46142 * 10 9 7 12 12 C 1.38104 * 119.93265 * 180.29770 * 11 10 9 13 13 C 1.38305 * 120.06272 * 359.47314 * 12 11 10 14 14 C 1.50701 * 119.92910 * 180.25358 * 13 12 11 15 15 N 1.46498 * 109.47235 * 270.25475 * 14 13 12 16 16 N 1.28391 * 119.16999 * 269.99735 * 15 14 13 17 17 C 1.30405 * 122.45017 * 179.97438 * 16 15 14 18 18 C 1.50701 * 119.76511 * 179.97438 * 17 16 15 19 19 F 1.39900 * 109.47122 * 0.02562 * 18 17 16 20 20 F 1.39907 * 109.47155 * 120.00275 * 18 17 16 21 21 F 1.39896 * 109.47273 * 240.00530 * 18 17 16 22 22 C 1.40468 * 120.46565 * 0.02562 * 17 16 15 23 23 C 1.36595 * 118.31956 * 359.97438 * 22 17 16 24 24 C 1.34671 * 119.17074 * 89.72603 * 15 14 13 25 25 O 1.22062 * 120.35123 * 0.02562 * 24 15 14 26 26 C 1.38302 * 120.13938 * 0.50581 * 13 12 11 27 27 C 1.38094 * 120.07047 * 359.77109 * 26 13 12 28 28 H 0.96992 * 119.99813 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.03972 * 0.02808 * 11 10 9 30 30 H 1.07990 * 119.96890 * 179.72053 * 12 11 10 31 31 H 1.09006 * 109.46946 * 30.25429 * 14 13 12 32 32 H 1.08998 * 109.47253 * 150.25176 * 14 13 12 33 33 H 1.08004 * 120.84065 * 179.97438 * 22 17 16 34 34 H 1.08004 * 121.10035 * 180.02562 * 23 22 17 35 35 H 1.08006 * 119.96428 * 179.74746 * 26 13 12 36 36 H 1.08005 * 120.03539 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2009 0.0011 10 6 3.9735 -2.4057 -0.1051 11 6 3.2235 -3.5745 -0.0921 12 6 3.8539 -4.7990 -0.1941 13 6 5.2298 -4.8615 -0.3200 14 6 5.9141 -6.1991 -0.4368 15 7 6.2536 -6.6924 0.9002 16 7 7.3929 -6.3890 1.4086 17 6 7.7605 -6.7928 2.5928 18 6 9.1128 -6.4010 3.1303 19 9 9.7795 -5.6128 2.1862 20 9 8.9511 -5.6732 4.3141 21 9 9.8630 -7.5529 3.3899 22 6 6.9055 -7.5911 3.3703 23 6 5.6869 -7.9290 2.8539 24 6 5.3606 -7.4481 1.5674 25 8 4.2823 -7.7183 1.0631 26 6 5.9794 -3.6994 -0.3337 27 6 5.3554 -2.4722 -0.2263 28 1 -0.4849 0.8400 0.0004 29 1 2.1487 -3.5261 0.0020 30 1 3.2716 -5.7083 -0.1795 31 1 5.2459 -6.9075 -0.9266 32 1 6.8245 -6.0913 -1.0263 33 1 7.2040 -7.9292 4.3517 34 1 4.9941 -8.5405 3.4132 35 1 7.0541 -3.7517 -0.4280 36 1 5.9414 -1.5650 -0.2367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754720079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:02 Heat of formation + Delta-G solvation = -110.077451 kcal Electronic energy + Delta-G solvation = -28677.907518 eV Core-core repulsion = 23908.124839 eV Total energy + Delta-G solvation = -4769.782679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.082 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.46705 -48.00080 -47.91856 -42.46930 -39.32889 -38.16523 -37.16251 -35.33922 -32.57427 -32.16958 -30.91954 -30.37124 -27.87661 -26.27822 -25.22001 -24.17132 -23.65785 -22.19285 -20.81918 -19.51141 -19.03086 -18.87814 -18.03644 -17.94593 -17.49246 -17.10233 -16.83113 -16.31447 -15.01012 -14.89250 -14.74533 -14.71638 -14.51360 -14.36825 -14.19758 -14.08859 -14.06357 -13.97100 -13.90333 -13.70944 -13.39799 -12.95269 -12.83161 -12.73223 -12.32683 -12.04317 -11.74338 -11.61724 -11.45691 -10.89359 -10.79984 -10.69420 -10.24750 -10.11825 -9.50339 -8.99302 -8.94207 -8.40303 -7.54917 -6.52847 -4.19653 0.10064 0.92043 1.38915 2.01910 2.04395 2.48207 2.94289 3.15421 3.19148 3.22549 3.33185 3.51488 3.97671 4.01536 4.14454 4.22157 4.33497 4.37246 4.69733 4.93446 4.98131 5.01683 5.12446 5.24096 5.36381 5.43575 5.57568 5.62000 5.63443 6.02081 6.18288 6.41013 6.65581 6.86485 7.05397 7.15050 7.23452 7.46445 7.63934 7.68295 7.91030 8.81175 9.40914 10.54103 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.015748 B = 0.002878 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.525032 B = 9725.840155 C =10551.119926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.209 6.209 10 C 0.172 3.828 11 C -0.227 4.227 12 C -0.041 4.041 13 C -0.224 4.224 14 C 0.163 3.837 15 N -0.316 5.316 16 N -0.143 5.143 17 C -0.053 4.053 18 C 0.546 3.454 19 F -0.161 7.161 20 F -0.166 7.166 21 F -0.169 7.169 22 C -0.050 4.050 23 C -0.176 4.176 24 C 0.479 3.521 25 O -0.507 6.507 26 C -0.047 4.047 27 C -0.198 4.198 28 H 0.282 0.718 29 H 0.136 0.864 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.159 0.841 34 H 0.172 0.828 35 H 0.118 0.882 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.675 -15.591 5.531 24.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.468 4.468 8 H 0.126 0.874 9 O -0.113 6.113 10 C 0.118 3.882 11 C -0.247 4.247 12 C -0.060 4.060 13 C -0.226 4.226 14 C 0.046 3.954 15 N -0.138 5.138 16 N 0.028 4.972 17 C -0.223 4.223 18 C 0.489 3.511 19 F -0.142 7.142 20 F -0.148 7.148 21 F -0.150 7.150 22 C -0.073 4.073 23 C -0.206 4.206 24 C 0.277 3.723 25 O -0.383 6.383 26 C -0.066 4.066 27 C -0.217 4.217 28 H 0.092 0.908 29 H 0.153 0.847 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.177 0.823 34 H 0.190 0.810 35 H 0.136 0.864 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 17.143 -14.886 4.484 23.142 hybrid contribution -0.116 0.333 0.806 0.880 sum 17.026 -14.553 5.290 23.015 Atomic orbital electron populations 1.69644 1.05628 1.28766 1.46910 1.24503 0.95059 0.98972 0.95365 0.86167 0.80344 0.81232 0.79109 1.19704 1.20598 1.18296 1.20818 0.76698 0.96820 1.52424 0.87427 1.83570 1.22858 1.25867 1.79001 1.19217 0.91764 0.85480 0.91706 1.21284 1.01332 0.91669 1.10378 1.20841 0.93341 0.97303 0.94497 1.19198 0.93965 0.92700 1.16738 1.20964 1.01604 0.95044 0.77741 1.47552 1.09123 1.39102 1.18056 1.70472 1.03824 1.11465 1.11425 1.21321 0.97923 1.08312 0.94733 1.17198 0.83122 0.74951 0.75805 1.93257 1.81964 1.74635 1.64368 1.93263 1.95562 1.77914 1.48016 1.93241 1.77903 1.49771 1.94107 1.21839 0.92624 0.92526 1.00324 1.22743 0.98240 1.04022 0.95625 1.18144 0.85593 0.80609 0.87920 1.91020 1.20887 1.57439 1.68918 1.20544 0.98479 0.91126 0.96410 1.20195 0.91937 0.97913 1.11696 0.90822 0.84683 0.86347 0.86912 0.87574 0.82341 0.81042 0.86402 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.83 13.96 55.48 0.77 -24.05 16 2 C 0.07 1.80 5.49 -17.51 -0.10 1.71 16 3 Si 0.91 21.25 28.62 -169.99 -4.86 16.38 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.39 -10.89 9.95 30.89 0.31 -10.58 16 8 H 0.11 3.06 5.44 -52.49 -0.29 2.78 16 9 O -0.21 -5.42 8.59 0.04 0.00 -5.42 16 10 C 0.17 3.89 6.65 -39.11 -0.26 3.63 16 11 C -0.23 -4.88 9.17 -39.40 -0.36 -5.24 16 12 C -0.04 -0.75 9.65 -39.61 -0.38 -1.13 16 13 C -0.22 -3.57 5.46 -104.57 -0.57 -4.14 16 14 C 0.16 2.04 5.68 -5.19 -0.03 2.01 16 15 N -0.32 -4.03 3.20 -64.51 -0.21 -4.24 16 16 N -0.14 -1.70 10.27 33.72 0.35 -1.36 16 17 C -0.05 -0.53 6.35 -82.36 -0.52 -1.05 16 18 C 0.55 5.02 3.32 36.01 0.12 5.14 16 19 F -0.16 -1.69 16.85 2.25 0.04 -1.65 16 20 F -0.17 -1.57 17.24 2.25 0.04 -1.53 16 21 F -0.17 -1.40 17.24 2.25 0.04 -1.36 16 22 C -0.05 -0.41 9.74 -39.34 -0.38 -0.79 16 23 C -0.18 -1.70 10.13 -39.06 -0.40 -2.10 16 24 C 0.48 6.37 7.47 -15.19 -0.11 6.26 16 25 O -0.51 -8.15 15.99 4.86 0.08 -8.07 16 26 C -0.05 -0.76 9.69 -39.61 -0.38 -1.14 16 27 C -0.20 -3.80 9.99 -39.40 -0.39 -4.19 16 28 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.14 3.07 5.64 -52.49 -0.30 2.77 16 30 H 0.12 2.07 7.43 -52.49 -0.39 1.68 16 31 H 0.11 1.34 7.32 -51.93 -0.38 0.96 16 32 H 0.11 1.06 8.08 -51.93 -0.42 0.64 16 33 H 0.16 0.72 8.06 -52.48 -0.42 0.29 16 34 H 0.17 1.24 8.06 -52.48 -0.42 0.81 16 35 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 36 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 LS Contribution 336.46 15.07 5.07 5.07 Total: -1.00 -30.71 336.46 -4.75 -35.45 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -2.60 Total: 2.38 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -3.47 Total: -11.61 kcal Atomic # 7 Polarization: -30.56 SS G_CDS: 0.91 Total: -29.65 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.08 Total: -13.49 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.12 Total: -4.54 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.86 Total: 16.38 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.71 -4.75 -35.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754720079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.623 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds