Wall clock time and date at job start Sat Apr 11 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86804 * 120.00131 * 2 1 4 4 H 1.48498 * 109.47318 * 240.00046 * 3 2 1 5 5 H 1.48497 * 109.47073 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46950 * 119.99960 * 3 2 1 7 7 C 1.38634 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00601 * 180.02562 * 7 2 1 9 9 O 1.34817 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.35775 * 116.99911 * 174.98259 * 9 7 2 11 11 C 1.38738 * 120.08657 * 5.16904 * 10 9 7 12 12 C 1.38343 * 119.97316 * 180.02562 * 11 10 9 13 13 F 1.35098 * 119.92378 * 179.97438 * 12 11 10 14 14 C 1.38555 * 120.15428 * 0.02562 * 12 11 10 15 15 C 1.38184 * 120.17801 * 359.69652 * 14 12 11 16 16 C 1.38714 * 120.01886 * 0.55907 * 15 14 12 17 17 N 1.40084 * 120.07620 * 179.74723 * 16 15 14 18 18 C 1.34776 * 120.00217 * 335.18858 * 17 16 15 19 19 O 1.21295 * 119.99544 * 354.44527 * 18 17 16 20 20 C 1.50696 * 120.00118 * 174.16988 * 18 17 16 21 21 N 1.46504 * 109.46914 * 180.27694 * 20 18 17 22 22 C 1.47021 * 121.01478 * 90.00355 * 21 20 18 23 23 S 1.83709 * 103.10502 * 196.71405 * 22 21 20 24 24 C 1.83787 * 94.15936 * 338.07667 * 23 22 21 25 25 C 1.32759 * 121.01847 * 269.71555 * 21 20 18 26 26 O 1.21277 * 121.80976 * 359.66520 * 25 21 20 27 27 H 0.96998 * 119.99906 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.01524 * 0.02562 * 11 10 9 29 29 H 1.07997 * 119.91153 * 179.97438 * 14 12 11 30 30 H 1.07994 * 119.99257 * 180.29845 * 15 14 12 31 31 H 0.97001 * 120.00128 * 155.19459 * 17 16 15 32 32 H 1.08998 * 109.46993 * 300.27584 * 20 18 17 33 33 H 1.09000 * 109.47612 * 60.27947 * 20 18 17 34 34 H 1.09006 * 110.68785 * 315.11298 * 22 21 20 35 35 H 1.08995 * 110.69215 * 78.30422 * 22 21 20 36 36 H 1.09001 * 110.84789 * 139.67889 * 24 23 22 37 37 H 1.09003 * 110.85202 * 263.10378 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2848 2.7465 0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3349 -2.3681 -0.0005 10 6 2.0703 -3.5045 -0.1069 11 6 3.4562 -3.4391 -0.1013 12 6 4.2032 -4.5983 -0.2104 13 9 5.5526 -4.5334 -0.2054 14 6 3.5707 -5.8257 -0.3257 15 6 2.1908 -5.8987 -0.3262 16 6 1.4346 -4.7405 -0.2226 17 7 0.0356 -4.8126 -0.2283 18 6 -0.5830 -5.8577 -0.8127 19 8 0.0651 -6.6833 -1.4208 20 6 -2.0790 -6.0039 -0.7055 21 7 -2.5033 -7.2143 -1.4136 22 6 -2.5815 -8.5089 -0.7212 23 16 -2.6388 -9.7177 -2.1033 24 6 -3.2457 -8.4901 -3.3291 25 6 -2.8343 -7.1746 -2.6987 26 8 -2.8056 -6.1423 -3.3346 27 1 -0.4850 0.8400 0.0004 28 1 3.9515 -2.4836 -0.0119 29 1 4.1578 -6.7281 -0.4110 30 1 1.7010 -6.8574 -0.4114 31 1 -0.4880 -4.1103 0.1884 32 1 -2.3624 -6.0789 0.3443 33 1 -2.5620 -5.1343 -1.1511 34 1 -1.6969 -8.6701 -0.1050 35 1 -3.4879 -8.5693 -0.1188 36 1 -2.7572 -8.6307 -4.2933 37 1 -4.3292 -8.5484 -3.4327 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760785501.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:05 Heat of formation + Delta-G solvation = -109.390052 kcal Electronic energy + Delta-G solvation = -26680.287902 eV Core-core repulsion = 22464.375417 eV Total energy + Delta-G solvation = -4215.912485 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.073 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.85644 -41.99742 -41.18281 -40.05032 -38.05822 -36.96345 -35.64602 -34.32660 -32.33476 -31.13040 -30.33411 -28.97559 -27.46675 -27.05696 -24.26175 -23.39785 -21.96655 -20.83454 -20.18573 -19.60572 -18.84171 -18.66754 -18.35758 -17.55383 -17.30324 -17.00371 -16.82114 -16.52186 -16.30954 -16.05953 -15.93570 -15.48400 -15.40647 -15.20863 -15.10304 -14.73704 -14.54328 -14.03141 -13.95162 -13.87016 -13.53668 -13.46020 -13.21629 -12.97775 -12.61915 -12.37425 -12.17513 -12.05569 -11.70339 -11.43060 -11.21935 -11.05450 -10.83494 -10.15554 -9.59304 -8.91938 -8.76030 -8.52742 -6.18615 0.12836 0.42355 0.42530 0.67152 1.26081 1.36340 1.44309 1.46824 1.50012 1.51402 2.10824 2.17441 2.65107 2.99154 3.00320 3.17092 3.42518 3.53433 3.92014 3.98723 4.06667 4.13215 4.14495 4.22075 4.29159 4.33574 4.38464 4.57189 4.78049 4.89909 4.98048 5.19608 5.26867 5.32035 5.47770 5.77601 5.90969 5.99596 6.38784 6.68256 6.91838 7.01255 7.58629 8.67475 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.003216 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.239960 B = 8703.425425 C =10458.021214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.007 4.007 3 Si 1.010 2.990 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.418 4.418 8 H 0.098 0.902 9 O -0.202 6.202 10 C 0.129 3.871 11 C -0.264 4.264 12 C 0.120 3.880 13 F -0.145 7.145 14 C -0.204 4.204 15 C -0.060 4.060 16 C 0.064 3.936 17 N -0.646 5.646 18 C 0.491 3.509 19 O -0.550 6.550 20 C 0.107 3.893 21 N -0.592 5.592 22 C 0.157 3.843 23 S -0.260 6.260 24 C -0.086 4.086 25 C 0.510 3.490 26 O -0.563 6.563 27 H 0.275 0.725 28 H 0.136 0.864 29 H 0.157 0.843 30 H 0.160 0.840 31 H 0.421 0.579 32 H 0.170 0.830 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.644 -15.911 2.085 17.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.207 4.207 3 Si 0.830 3.170 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.494 4.494 8 H 0.116 0.884 9 O -0.107 6.107 10 C 0.075 3.925 11 C -0.285 4.285 12 C 0.100 3.900 13 F -0.124 7.124 14 C -0.223 4.223 15 C -0.080 4.080 16 C -0.031 4.031 17 N -0.291 5.291 18 C 0.279 3.721 19 O -0.428 6.428 20 C -0.020 4.020 21 N -0.324 5.324 22 C -0.075 4.075 23 S -0.035 6.035 24 C -0.236 4.236 25 C 0.297 3.703 26 O -0.442 6.442 27 H 0.085 0.915 28 H 0.153 0.847 29 H 0.174 0.826 30 H 0.177 0.823 31 H 0.258 0.742 32 H 0.187 0.813 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.164 0.836 36 H 0.158 0.842 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.356 -16.994 1.297 18.563 hybrid contribution 0.490 2.620 0.068 2.666 sum -6.866 -14.374 1.366 15.988 Atomic orbital electron populations 1.70097 1.07469 1.29107 1.47253 1.26353 0.96836 1.02042 0.95450 0.84761 0.77602 0.74940 0.79734 1.18916 1.19389 1.18204 1.21687 0.92498 0.81096 1.54082 0.88422 1.83868 1.34671 1.11787 1.80395 1.19087 0.90159 0.87169 0.96064 1.20937 0.93443 0.99072 1.15069 1.17480 0.76244 0.94316 1.01982 1.91427 1.29535 1.97356 1.94068 1.20900 0.94705 0.96452 1.10280 1.20963 0.92503 0.97281 0.97281 1.17189 0.83750 0.90983 1.11164 1.43244 1.04437 1.25326 1.56065 1.21792 0.92109 0.80760 0.77452 1.90643 1.67508 1.43189 1.41462 1.21488 0.88844 0.89239 1.02466 1.47405 1.65045 1.09819 1.10134 1.24419 1.08908 0.79401 0.94788 1.88474 1.88558 1.17458 1.08980 1.24219 1.08268 0.89741 1.01420 1.20751 0.76294 0.91283 0.81943 1.90807 1.54890 1.34868 1.63589 0.91546 0.84663 0.82565 0.82264 0.74183 0.81294 0.86376 0.85907 0.83650 0.84198 0.82351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.34 13.67 21.61 0.30 -50.04 16 2 C -0.01 -0.35 5.49 84.83 0.47 0.11 16 3 Si 1.01 40.61 29.55 68.60 2.03 42.64 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 6 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 7 C -0.42 -22.58 9.49 67.91 0.64 -21.94 16 8 H 0.10 4.97 5.20 -2.91 -0.02 4.95 16 9 O -0.20 -10.77 9.17 -22.89 -0.21 -10.98 16 10 C 0.13 5.97 6.66 22.69 0.15 6.12 16 11 C -0.26 -11.57 9.14 22.41 0.20 -11.37 16 12 C 0.12 4.61 7.29 22.37 0.16 4.78 16 13 F -0.15 -5.31 17.26 44.97 0.78 -4.53 16 14 C -0.20 -7.00 10.02 22.33 0.22 -6.78 16 15 C -0.06 -2.16 8.72 22.37 0.19 -1.96 16 16 C 0.06 2.58 6.45 38.23 0.25 2.83 16 17 N -0.65 -22.17 5.29 -303.04 -1.60 -23.78 16 18 C 0.49 14.88 7.70 87.66 0.68 15.55 16 19 O -0.55 -19.71 13.60 -3.08 -0.04 -19.75 16 20 C 0.11 2.18 6.04 85.63 0.52 2.70 16 21 N -0.59 -11.79 2.32 -836.25 -1.94 -13.73 16 22 C 0.16 2.00 7.84 127.67 1.00 3.00 16 23 S -0.26 -4.27 23.56 -56.49 -1.33 -5.60 16 24 C -0.09 -1.41 7.46 71.51 0.53 -0.88 16 25 C 0.51 12.63 7.67 88.24 0.68 13.31 16 26 O -0.56 -19.50 16.93 -3.02 -0.05 -19.55 16 27 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 28 H 0.14 6.02 5.63 -2.91 -0.02 6.00 16 29 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 30 H 0.16 5.36 5.79 -2.91 -0.02 5.34 16 31 H 0.42 13.94 8.34 -92.71 -0.77 13.17 16 32 H 0.17 1.71 8.10 -2.39 -0.02 1.69 16 33 H 0.12 2.68 7.53 -2.39 -0.02 2.66 16 34 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.16 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -74.58 342.19 4.01 -70.57 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.39 Total: 29.27 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 5.70 Total: 5.48 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -3.25 Total: -87.55 kcal Atomic # 8 Polarization: -49.98 SS G_CDS: -0.30 Total: -50.28 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.78 Total: -4.53 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: -4.27 SS G_CDS: -1.33 Total: -5.60 kcal Total: -74.58 4.01 -70.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760785501.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.824 kcal (2) G-P(sol) polarization free energy of solvation -74.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds