Wall clock time and date at job start Sat Apr 11 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86795 * 120.00195 * 2 1 4 4 H 1.48508 * 109.46977 * 270.00178 * 3 2 1 5 5 H 1.48501 * 109.47168 * 29.99848 * 3 2 1 6 6 H 1.48494 * 109.47526 * 149.99889 * 3 2 1 7 7 C 1.38948 * 119.99570 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00406 * 0.02562 * 7 2 1 9 9 N 1.37099 * 119.99784 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00206 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99959 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00111 * 179.97438 * 10 9 7 13 13 O 1.45197 * 109.47096 * 179.97438 * 12 10 9 14 14 C 1.34232 * 117.00254 * 179.97438 * 13 12 10 15 15 O 1.20828 * 119.99815 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00132 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.47137 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.47137 * 179.97438 * 17 16 14 19 19 O 1.21218 * 120.00276 * 0.02562 * 18 17 16 20 20 C 1.47482 * 119.99924 * 179.97438 * 18 17 16 21 21 C 1.39586 * 119.72646 * 180.02562 * 20 18 17 22 22 C 1.38495 * 119.05727 * 179.97438 * 21 20 18 23 23 C 1.38775 * 118.49119 * 359.97438 * 22 21 20 24 24 Cl 1.73602 * 120.31824 * 179.97438 * 23 22 21 25 25 C 1.38831 * 119.36409 * 359.97438 * 23 22 21 26 26 N 1.31404 * 120.90299 * 0.02672 * 25 23 22 27 27 H 0.96996 * 119.99462 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99988 * 359.97438 * 9 7 2 29 29 H 1.09007 * 109.47201 * 59.99841 * 12 10 9 30 30 H 1.08998 * 109.47164 * 299.99792 * 12 10 9 31 31 H 1.09005 * 109.47136 * 60.00142 * 16 14 13 32 32 H 1.08998 * 109.47211 * 299.99944 * 16 14 13 33 33 H 1.08997 * 109.47269 * 59.99696 * 17 16 14 34 34 H 1.09003 * 109.46908 * 300.00460 * 17 16 14 35 35 H 1.08000 * 120.47423 * 0.25124 * 21 20 18 36 36 H 1.07998 * 120.75186 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.54987 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4002 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4211 0.0011 12 6 5.5607 -2.3706 0.0011 13 8 6.0447 -3.7396 0.0017 14 6 7.3754 -3.9156 0.0012 15 8 8.1115 -2.9574 0.0008 16 6 7.9513 -5.3081 0.0012 17 6 9.4793 -5.2281 0.0013 18 6 10.0552 -6.6207 0.0019 19 8 9.3168 -7.5820 0.0018 20 6 11.5173 -6.8140 0.0016 21 6 12.0446 -8.1064 0.0016 22 6 13.4196 -8.2719 0.0007 23 6 14.2226 -7.1400 -0.0008 24 17 15.9519 -7.2924 -0.0013 25 6 13.6297 -5.8847 -0.0018 26 7 12.3219 -5.7560 -0.0009 27 1 -0.4849 0.8401 -0.0004 28 1 3.8648 -0.3634 0.0007 29 1 5.9241 -1.8568 0.8911 30 1 5.9240 -1.8569 -0.8889 31 1 7.6150 -5.8404 -0.8886 32 1 7.6157 -5.8401 0.8914 33 1 9.8152 -4.6960 0.8913 34 1 9.8152 -4.6959 -0.8886 35 1 11.3897 -8.9652 -0.0021 36 1 13.8570 -9.2593 0.0003 37 1 14.2517 -5.0018 -0.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769186587.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:26 Heat of formation + Delta-G solvation = -146.083258 kcal Electronic energy + Delta-G solvation = -24660.176457 eV Core-core repulsion = 20428.256339 eV Total energy + Delta-G solvation = -4231.920118 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90698 -41.55225 -40.27372 -39.97860 -37.75976 -37.59661 -36.08354 -34.40656 -33.86612 -33.58518 -32.51205 -30.37479 -27.94269 -26.38004 -25.21891 -24.58081 -22.12518 -21.53750 -20.99129 -20.51217 -19.19694 -18.43450 -17.96676 -17.87461 -17.82971 -17.46722 -17.07368 -16.77418 -16.52231 -15.90559 -15.70866 -15.52875 -15.22088 -15.20583 -14.67135 -14.42176 -14.41959 -14.19854 -13.76929 -13.66800 -13.61976 -13.08073 -12.99685 -12.95252 -12.45903 -12.41340 -12.28023 -12.00123 -11.83799 -11.65527 -11.58550 -11.38671 -11.06680 -10.65131 -10.59735 -10.34016 -10.15654 -8.45971 -6.09329 -0.85497 -0.00850 0.83434 1.00503 1.11098 1.29663 1.33983 1.36013 1.46011 1.76264 2.20598 2.52289 2.52937 2.85668 3.08473 3.23407 3.50179 3.55992 3.68960 3.78503 3.88787 4.01068 4.02380 4.08524 4.15252 4.16631 4.53548 4.54079 4.68209 4.75792 4.81586 4.94475 5.22751 5.31972 5.48687 5.85438 6.08393 6.46518 6.58817 6.64357 6.77770 7.25810 7.78209 8.70719 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.034265 B = 0.001540 C = 0.001475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.962806 B =18182.629179 C =18973.842791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.007 4.007 3 Si 0.962 3.038 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.231 1.231 7 C -0.335 4.335 8 H 0.060 0.940 9 N -0.575 5.575 10 C 0.447 3.553 11 O -0.610 6.610 12 C 0.067 3.933 13 O -0.348 6.348 14 C 0.465 3.535 15 O -0.525 6.525 16 C -0.103 4.103 17 C -0.135 4.135 18 C 0.424 3.576 19 O -0.457 6.457 20 C 0.030 3.970 21 C -0.101 4.101 22 C -0.070 4.070 23 C -0.065 4.065 24 Cl -0.036 7.036 25 C 0.107 3.893 26 N -0.442 5.442 27 H 0.282 0.718 28 H 0.393 0.607 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.166 0.834 36 H 0.179 0.821 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.689 -12.008 0.014 38.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.207 4.207 3 Si 0.782 3.218 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.154 1.154 7 C -0.464 4.464 8 H 0.078 0.922 9 N -0.217 5.217 10 C 0.234 3.766 11 O -0.495 6.495 12 C -0.010 4.010 13 O -0.264 6.264 14 C 0.309 3.691 15 O -0.415 6.415 16 C -0.140 4.140 17 C -0.172 4.172 18 C 0.301 3.699 19 O -0.330 6.330 20 C -0.104 4.104 21 C -0.121 4.121 22 C -0.096 4.096 23 C -0.094 4.094 24 Cl -0.007 7.007 25 C -0.054 4.054 26 N -0.154 5.154 27 H 0.092 0.908 28 H 0.230 0.770 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.184 0.816 36 H 0.196 0.804 37 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 35.598 -12.014 0.014 37.570 hybrid contribution 0.259 0.279 0.002 0.381 sum 35.856 -11.735 0.017 37.728 Atomic orbital electron populations 1.69788 1.08108 1.29567 1.49053 1.26098 0.96460 1.02653 0.95504 0.85405 0.79582 0.76671 0.80184 1.17900 1.19672 1.15411 1.19017 0.80819 0.95350 1.51225 0.92208 1.41808 1.06078 1.07026 1.66830 1.20259 0.89509 0.83993 0.82870 1.90585 1.71025 1.32682 1.55173 1.22600 0.90409 0.81600 1.06351 1.86572 1.25269 1.30996 1.83547 1.24196 0.79714 0.93651 0.71504 1.90654 1.60393 1.43811 1.46629 1.21256 0.95214 0.89346 1.08186 1.21649 0.92461 0.95339 1.07743 1.22247 0.86627 0.90977 0.70059 1.90588 1.61388 1.44578 1.36431 1.21755 0.95685 0.90576 1.02421 1.22490 0.95909 0.98339 0.95345 1.21897 0.92319 1.00079 0.95330 1.22580 0.87319 0.96510 1.03004 1.98427 1.07817 1.98152 1.96326 1.23278 0.90254 0.96907 0.94973 1.67800 1.05081 1.32985 1.09498 0.90817 0.77049 0.86516 0.86415 0.86020 0.86036 0.86264 0.86248 0.81649 0.80380 0.79055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.86 13.96 21.66 0.30 -54.56 16 2 C -0.01 -0.39 5.50 84.92 0.47 0.08 16 3 Si 0.96 37.90 27.74 68.60 1.90 39.81 16 4 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.23 -7.66 6.52 99.48 0.65 -7.01 16 7 C -0.34 -19.52 10.16 84.04 0.85 -18.66 16 8 H 0.06 4.14 7.39 -2.91 -0.02 4.12 16 9 N -0.58 -27.16 5.09 -306.99 -1.56 -28.72 16 10 C 0.45 20.78 7.86 87.66 0.69 21.47 16 11 O -0.61 -35.04 16.08 15.72 0.25 -34.79 16 12 C 0.07 2.26 5.94 71.24 0.42 2.68 16 13 O -0.35 -11.90 9.75 -45.08 -0.44 -12.33 16 14 C 0.46 12.51 7.96 71.24 0.57 13.08 16 15 O -0.53 -15.16 15.73 21.96 0.35 -14.81 16 16 C -0.10 -2.02 5.10 29.85 0.15 -1.87 16 17 C -0.13 -2.21 4.47 29.85 0.13 -2.07 16 18 C 0.42 7.01 7.13 28.12 0.20 7.21 16 19 O -0.46 -9.33 15.95 -2.84 -0.05 -9.37 16 20 C 0.03 0.44 6.73 41.74 0.28 0.72 16 21 C -0.10 -1.06 9.63 22.66 0.22 -0.84 16 22 C -0.07 -0.51 9.97 22.46 0.22 -0.29 16 23 C -0.06 -0.55 6.36 22.54 0.14 -0.41 16 24 Cl -0.04 -0.27 28.99 -2.72 -0.08 -0.35 16 25 C 0.11 1.09 10.98 84.90 0.93 2.02 16 26 N -0.44 -6.32 9.79 -185.07 -1.81 -8.13 16 27 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.39 15.15 5.76 -92.71 -0.53 14.62 16 29 H 0.12 3.28 8.13 -2.38 -0.02 3.26 16 30 H 0.12 3.29 8.13 -2.39 -0.02 3.27 16 31 H 0.12 2.24 8.10 -2.38 -0.02 2.22 16 32 H 0.12 2.24 8.10 -2.39 -0.02 2.22 16 33 H 0.12 1.89 8.10 -2.39 -0.02 1.87 16 34 H 0.12 1.89 8.10 -2.39 -0.02 1.88 16 35 H 0.17 1.42 7.64 -2.91 -0.02 1.40 16 36 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 37 H 0.19 1.07 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -79.90 355.47 4.70 -75.20 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.55 Total: 24.95 kcal Atomic # 6 Polarization: 17.83 SS G_CDS: 5.29 Total: 23.12 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -3.07 Total: -91.42 kcal Atomic # 8 Polarization: -71.42 SS G_CDS: 0.11 Total: -71.31 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 1.90 Total: 39.81 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.08 Total: -0.35 kcal Total: -79.90 4.70 -75.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769186587.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.881 kcal (2) G-P(sol) polarization free energy of solvation -79.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds