Wall clock time and date at job start Sat Apr 11 2020 05:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00038 * 2 1 4 4 H 1.48502 * 109.46989 * 239.99987 * 3 2 1 5 5 H 1.48500 * 109.47114 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46805 * 120.00290 * 3 2 1 7 7 C 1.37883 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99921 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47149 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.47257 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54612 * 68.36940 * 11 10 9 13 13 O 1.42100 * 110.54231 * 291.62160 * 11 10 9 14 14 N 1.65598 * 104.45106 * 179.97438 * 11 10 9 15 15 C 1.34776 * 119.99829 * 64.99732 * 14 11 10 16 16 O 1.21281 * 120.00161 * 0.02562 * 15 14 11 17 17 C 1.50700 * 119.99755 * 179.97438 * 15 14 11 18 18 N 1.46505 * 109.46909 * 179.97438 * 17 15 14 19 19 C 1.47068 * 126.29884 * 85.00553 * 18 17 15 20 20 C 1.54066 * 110.04916 * 208.96145 * 19 18 17 21 21 C 1.55602 * 104.29476 * 314.83004 * 20 19 18 22 22 S 1.66842 * 126.22232 * 264.93402 * 18 17 15 23 23 O 1.42107 * 105.14140 * 61.13608 * 22 18 17 24 24 O 1.42098 * 105.27888 * 291.49366 * 22 18 17 25 25 H 0.97000 * 120.00119 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47343 * 60.00164 * 9 7 2 27 27 H 1.09008 * 109.47473 * 300.00194 * 9 7 2 28 28 H 1.08991 * 109.47339 * 60.00019 * 10 9 7 29 29 H 1.09003 * 109.47001 * 299.99521 * 10 9 7 30 30 H 0.96999 * 120.00133 * 244.99460 * 14 11 10 31 31 H 1.08999 * 109.46956 * 60.00354 * 17 15 14 32 32 H 1.08996 * 109.47713 * 300.00016 * 17 15 14 33 33 H 1.09002 * 109.35873 * 88.81413 * 19 18 17 34 34 H 1.09000 * 109.35301 * 329.10530 * 19 18 17 35 35 H 1.08992 * 110.46854 * 73.53536 * 20 19 18 36 36 H 1.09002 * 110.46579 * 196.12669 * 20 19 18 37 37 H 1.08998 * 111.16728 * 155.79272 * 21 20 19 38 38 H 1.09005 * 111.16478 * 280.05459 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3383 -5.2331 -0.0013 12 8 0.6645 -5.4194 -1.2385 13 8 0.6639 -5.4201 1.2354 14 7 2.5204 -6.3927 -0.0020 15 6 3.3470 -6.5130 1.0558 16 8 3.2247 -5.7722 2.0083 17 6 4.4223 -7.5687 1.0554 18 7 5.1803 -7.4941 2.3069 19 6 4.8220 -8.1348 3.5813 20 6 5.3708 -7.3089 4.7604 21 6 6.8299 -6.9655 4.3428 22 16 6.6096 -6.6673 2.5462 23 8 6.2989 -5.3055 2.2845 24 8 7.5812 -7.3708 1.7844 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8719 -3.6044 0.8894 29 1 2.8719 -3.6044 -0.8906 30 1 2.6179 -6.9855 -0.7635 31 1 5.0945 -7.4024 0.2136 32 1 3.9645 -8.5538 0.9657 33 1 5.2476 -9.1378 3.6137 34 1 3.7369 -8.2003 3.6602 35 1 4.7875 -6.3976 4.8916 36 1 5.3656 -7.9010 5.6756 37 1 7.1837 -6.0682 4.8503 38 1 7.4992 -7.8069 4.5229 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776116568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:56 Heat of formation + Delta-G solvation = -165.734196 kcal Electronic energy + Delta-G solvation = -26218.470091 eV Core-core repulsion = 22123.185503 eV Total energy + Delta-G solvation = -4095.284588 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.069 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.15464 -37.49966 -37.25059 -36.67943 -36.10938 -35.60747 -34.45810 -33.84421 -33.51841 -31.13181 -28.48576 -26.20613 -25.56307 -22.67722 -22.01731 -21.55745 -19.55936 -19.09945 -18.19938 -17.78361 -17.35678 -17.11273 -16.49547 -16.15221 -15.79781 -15.32140 -15.09648 -14.92918 -14.80418 -14.59012 -14.49095 -13.86347 -13.59036 -13.40677 -13.21714 -12.50702 -12.35220 -12.31993 -12.22549 -12.15065 -11.94875 -11.76481 -11.70821 -11.60845 -11.42453 -11.02491 -10.96317 -10.86748 -10.83957 -10.63592 -10.36262 -10.29884 -9.67429 -9.39744 -9.13524 -8.44660 -6.07355 -4.12212 -0.12870 0.52396 2.03502 2.07462 2.74105 3.27581 3.33110 3.36703 3.40033 3.48038 3.88944 4.00094 4.13084 4.17439 4.38794 4.42524 4.52235 4.64251 4.76128 4.89349 4.93176 4.97185 5.14214 5.20135 5.27978 5.43236 5.49347 5.65414 5.79557 5.91631 6.52520 6.63467 7.32928 7.39369 7.45485 7.86599 8.22416 8.90857 9.52080 11.03790 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.003613 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.512274 B = 7748.032070 C = 9072.537381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.031 3.969 10 C -0.576 4.576 11 S 2.565 3.435 12 O -0.955 6.955 13 O -0.940 6.940 14 N -1.060 6.060 15 C 0.502 3.498 16 O -0.466 6.466 17 C 0.142 3.858 18 N -0.979 5.979 19 C 0.081 3.919 20 C -0.126 4.126 21 C -0.595 4.595 22 S 2.565 3.435 23 O -0.936 6.936 24 O -0.958 6.958 25 H 0.265 0.735 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.134 0.866 29 H 0.122 0.878 30 H 0.429 0.571 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.143 0.857 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.522 -21.744 6.889 26.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.081 0.919 9 C -0.009 4.009 10 C -0.711 4.711 11 S 2.665 3.335 12 O -0.946 6.946 13 O -0.930 6.930 14 N -0.822 5.822 15 C 0.285 3.715 16 O -0.335 6.335 17 C 0.011 3.989 18 N -0.819 5.819 19 C -0.045 4.045 20 C -0.165 4.165 21 C -0.726 4.726 22 S 2.661 3.339 23 O -0.925 6.925 24 O -0.947 6.947 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.152 0.848 29 H 0.140 0.860 30 H 0.263 0.737 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.161 0.839 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.857 -20.833 6.862 25.424 hybrid contribution 0.752 0.598 0.161 0.975 sum 13.610 -20.234 7.023 25.377 Atomic orbital electron populations 1.69944 1.06107 1.27274 1.49708 1.25053 0.94978 0.99508 0.94882 0.86506 0.79461 0.82380 0.78794 1.20059 1.21106 1.20015 1.20966 0.93172 0.89578 1.52039 0.91924 1.18979 0.92583 0.90375 0.98925 1.30344 1.13676 1.15973 1.11074 1.06738 0.74978 0.77342 0.74449 1.93588 1.70603 1.85333 1.45060 1.93585 1.70366 1.84422 1.44608 1.55458 1.49319 1.50571 1.26863 1.21410 0.82517 0.86000 0.81563 1.90920 1.68411 1.41910 1.32275 1.20949 0.93131 0.99044 0.85753 1.56925 1.41678 1.68557 1.14761 1.22105 1.04507 0.96447 0.81429 1.22661 0.91196 1.03226 0.99457 1.30824 1.05137 1.12276 1.24395 1.06671 0.73994 0.74757 0.78447 1.93708 1.82163 1.33674 1.82946 1.93620 1.59543 1.74164 1.67421 0.92515 0.94798 0.94645 0.84796 0.85993 0.73661 0.86313 0.86093 0.90326 0.88487 0.87947 0.87102 0.83916 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 8 H 0.06 1.73 7.74 -52.49 -0.41 1.33 16 9 C 0.03 0.81 4.98 -27.89 -0.14 0.68 16 10 C -0.58 -11.97 5.82 37.16 0.22 -11.75 16 11 S 2.56 46.90 5.11 -107.50 -0.55 46.35 16 12 O -0.96 -18.91 18.08 -57.54 -1.04 -19.95 16 13 O -0.94 -20.40 17.04 -64.79 -1.10 -21.50 16 14 N -1.06 -12.88 5.60 31.22 0.17 -12.71 16 15 C 0.50 6.43 7.64 -10.99 -0.08 6.35 16 16 O -0.47 -8.00 14.54 -11.57 -0.17 -8.17 16 17 C 0.14 1.12 6.83 -5.19 -0.04 1.08 16 18 N -0.98 -8.51 2.80 -114.62 -0.32 -8.84 16 19 C 0.08 0.47 6.83 -3.18 -0.02 0.45 16 20 C -0.13 -0.66 6.79 -24.79 -0.17 -0.83 16 21 C -0.60 -3.17 7.51 38.54 0.29 -2.88 16 22 S 2.57 25.53 6.16 -107.50 -0.66 24.86 16 23 O -0.94 -14.02 18.14 -57.43 -1.04 -15.06 16 24 O -0.96 -11.54 18.14 -57.43 -1.04 -12.59 16 25 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 28 H 0.13 2.81 7.19 -51.93 -0.37 2.44 16 29 H 0.12 2.21 8.14 -51.92 -0.42 1.79 16 30 H 0.43 3.11 8.79 -34.47 -0.30 2.81 16 31 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.14 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.14 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -43.78 352.31 -9.95 -53.73 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.87 Total: -1.47 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -0.35 Total: -20.55 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.59 Total: -47.87 kcal Atomic # 8 Polarization: -72.87 SS G_CDS: -4.40 Total: -77.27 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 72.42 SS G_CDS: -1.21 Total: 71.21 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -43.78 -9.95 -53.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776116568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.003 kcal (2) G-P(sol) polarization free energy of solvation -43.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds