Wall clock time and date at job start Sat Apr 11 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00038 * 2 1 4 4 H 1.48502 * 109.46989 * 239.99987 * 3 2 1 5 5 H 1.48500 * 109.47114 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46805 * 120.00290 * 3 2 1 7 7 C 1.37883 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99921 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47149 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.47257 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54612 * 68.36940 * 11 10 9 13 13 O 1.42100 * 110.54231 * 291.62160 * 11 10 9 14 14 N 1.65598 * 104.45106 * 179.97438 * 11 10 9 15 15 C 1.34776 * 119.99829 * 64.99732 * 14 11 10 16 16 O 1.21281 * 120.00161 * 0.02562 * 15 14 11 17 17 C 1.50700 * 119.99755 * 179.97438 * 15 14 11 18 18 N 1.46505 * 109.46909 * 179.97438 * 17 15 14 19 19 C 1.47068 * 126.29884 * 85.00553 * 18 17 15 20 20 C 1.54066 * 110.04916 * 208.96145 * 19 18 17 21 21 C 1.55602 * 104.29476 * 314.83004 * 20 19 18 22 22 S 1.66842 * 126.22232 * 264.93402 * 18 17 15 23 23 O 1.42107 * 105.14140 * 61.13608 * 22 18 17 24 24 O 1.42098 * 105.27888 * 291.49366 * 22 18 17 25 25 H 0.97000 * 120.00119 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47343 * 60.00164 * 9 7 2 27 27 H 1.09008 * 109.47473 * 300.00194 * 9 7 2 28 28 H 1.08991 * 109.47339 * 60.00019 * 10 9 7 29 29 H 1.09003 * 109.47001 * 299.99521 * 10 9 7 30 30 H 0.96999 * 120.00133 * 244.99460 * 14 11 10 31 31 H 1.08999 * 109.46956 * 60.00354 * 17 15 14 32 32 H 1.08996 * 109.47713 * 300.00016 * 17 15 14 33 33 H 1.09002 * 109.35873 * 88.81413 * 19 18 17 34 34 H 1.09000 * 109.35301 * 329.10530 * 19 18 17 35 35 H 1.08992 * 110.46854 * 73.53536 * 20 19 18 36 36 H 1.09002 * 110.46579 * 196.12669 * 20 19 18 37 37 H 1.08998 * 111.16728 * 155.79272 * 21 20 19 38 38 H 1.09005 * 111.16478 * 280.05459 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3383 -5.2331 -0.0013 12 8 0.6645 -5.4194 -1.2385 13 8 0.6639 -5.4201 1.2354 14 7 2.5204 -6.3927 -0.0020 15 6 3.3470 -6.5130 1.0558 16 8 3.2247 -5.7722 2.0083 17 6 4.4223 -7.5687 1.0554 18 7 5.1803 -7.4941 2.3069 19 6 4.8220 -8.1348 3.5813 20 6 5.3708 -7.3089 4.7604 21 6 6.8299 -6.9655 4.3428 22 16 6.6096 -6.6673 2.5462 23 8 6.2989 -5.3055 2.2845 24 8 7.5812 -7.3708 1.7844 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8719 -3.6044 0.8894 29 1 2.8719 -3.6044 -0.8906 30 1 2.6179 -6.9855 -0.7635 31 1 5.0945 -7.4024 0.2136 32 1 3.9645 -8.5538 0.9657 33 1 5.2476 -9.1378 3.6137 34 1 3.7369 -8.2003 3.6602 35 1 4.7875 -6.3976 4.8916 36 1 5.3656 -7.9010 5.6756 37 1 7.1837 -6.0682 4.8503 38 1 7.4992 -7.8069 4.5229 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776116568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:55 Heat of formation + Delta-G solvation = -205.125876 kcal Electronic energy + Delta-G solvation = -26220.178243 eV Core-core repulsion = 22123.185503 eV Total energy + Delta-G solvation = -4096.992740 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.069 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.21654 -38.34265 -38.09865 -37.98663 -37.23788 -36.94651 -35.98241 -35.59686 -34.09776 -33.19947 -29.12694 -27.66700 -26.74167 -23.77926 -23.24028 -22.75287 -20.80991 -20.00140 -19.38596 -19.00366 -18.49000 -18.12370 -17.76774 -17.34761 -16.89416 -16.64106 -16.57610 -16.32035 -15.86693 -15.53825 -15.31640 -15.21817 -14.51781 -14.37627 -14.06323 -13.99437 -13.82709 -13.69222 -13.38182 -13.27125 -13.19411 -13.02511 -12.96422 -12.87704 -12.72025 -12.43913 -12.34227 -12.25937 -12.06022 -11.99941 -11.78315 -11.58126 -11.43511 -11.10325 -10.67303 -10.07814 -8.29660 -6.43708 -1.01744 -0.76434 1.02638 1.32469 1.37278 1.41584 1.49845 1.56478 2.35034 2.54296 2.61864 2.99817 3.00839 3.03271 3.22787 3.44518 3.63233 3.86333 3.92111 4.00881 4.06504 4.09252 4.29136 4.48373 4.56439 4.66571 4.71526 4.87211 5.01072 5.11080 5.19225 5.21077 5.37164 5.63861 5.75027 6.02283 6.47736 6.67848 7.25922 8.82561 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.003613 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.512274 B = 7748.032070 C = 9072.537381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.025 3.975 10 C -0.587 4.587 11 S 2.605 3.395 12 O -0.970 6.970 13 O -0.975 6.975 14 N -1.036 6.036 15 C 0.495 3.505 16 O -0.514 6.514 17 C 0.139 3.861 18 N -0.983 5.983 19 C 0.071 3.929 20 C -0.130 4.130 21 C -0.559 4.559 22 S 2.546 3.454 23 O -1.003 7.003 24 O -0.988 6.988 25 H 0.269 0.731 26 H 0.017 0.983 27 H 0.006 0.994 28 H 0.127 0.873 29 H 0.146 0.854 30 H 0.453 0.547 31 H 0.143 0.857 32 H 0.174 0.826 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.536 -24.060 7.576 29.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.086 0.914 9 C -0.014 4.014 10 C -0.719 4.719 11 S 2.702 3.298 12 O -0.960 6.960 13 O -0.965 6.965 14 N -0.805 5.805 15 C 0.280 3.720 16 O -0.385 6.385 17 C 0.009 3.991 18 N -0.823 5.823 19 C -0.054 4.054 20 C -0.170 4.170 21 C -0.694 4.694 22 S 2.647 3.353 23 O -0.993 6.993 24 O -0.977 6.977 25 H 0.078 0.922 26 H 0.036 0.964 27 H 0.024 0.976 28 H 0.145 0.855 29 H 0.164 0.836 30 H 0.294 0.706 31 H 0.161 0.839 32 H 0.191 0.809 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.166 0.834 37 H 0.173 0.827 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 14.881 -23.144 7.473 28.511 hybrid contribution 0.138 1.171 0.041 1.180 sum 15.019 -21.973 7.514 27.656 Atomic orbital electron populations 1.70075 1.07885 1.28531 1.50486 1.26079 0.95933 1.03708 0.94111 0.85371 0.78226 0.77329 0.79368 1.18609 1.20217 1.19336 1.21429 0.93731 0.91023 1.52194 0.91416 1.18801 0.93326 0.92595 0.96659 1.30295 1.12959 1.16641 1.11983 1.05221 0.74722 0.76636 0.73207 1.93562 1.71512 1.85394 1.45507 1.93538 1.71820 1.84781 1.46382 1.54866 1.48107 1.49330 1.28239 1.22627 0.82697 0.86281 0.80356 1.90913 1.69550 1.43946 1.34123 1.21388 0.92008 0.99215 0.86498 1.56918 1.41171 1.68127 1.16080 1.22451 1.04778 0.97976 0.80150 1.22808 0.90313 1.02884 1.00955 1.30650 1.06309 1.14346 1.18091 1.06953 0.74014 0.73423 0.80900 1.93633 1.83066 1.37300 1.85273 1.93576 1.60248 1.73922 1.69996 0.92173 0.96444 0.97614 0.85455 0.83587 0.70564 0.83932 0.80922 0.86383 0.88809 0.90451 0.83389 0.82739 0.80487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 45.52 29.54 68.60 2.03 47.54 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.54 -32.43 9.11 25.60 0.23 -32.20 16 8 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 9 C 0.03 1.41 4.98 29.85 0.15 1.55 16 10 C -0.59 -25.29 5.82 71.98 0.42 -24.87 16 11 S 2.60 96.44 5.11 -56.49 -0.29 96.15 16 12 O -0.97 -38.29 18.08 -127.65 -2.31 -40.60 16 13 O -0.98 -43.50 17.04 -120.72 -2.06 -45.56 16 14 N -1.04 -23.80 5.60 -173.53 -0.97 -24.77 16 15 C 0.49 12.12 7.64 87.66 0.67 12.79 16 16 O -0.51 -17.91 14.54 13.34 0.19 -17.72 16 17 C 0.14 1.81 6.83 85.63 0.58 2.40 16 18 N -0.98 -14.94 2.80 -516.54 -1.45 -16.39 16 19 C 0.07 0.59 6.83 86.63 0.59 1.18 16 20 C -0.13 -0.98 6.79 31.85 0.22 -0.77 16 21 C -0.56 -4.22 7.51 72.88 0.55 -3.68 16 22 S 2.55 48.42 6.16 -56.49 -0.35 48.07 16 23 O -1.00 -31.37 18.14 -127.76 -2.32 -33.68 16 24 O -0.99 -22.83 18.14 -127.76 -2.32 -25.14 16 25 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 26 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 28 H 0.13 5.64 7.19 -2.39 -0.02 5.63 16 29 H 0.15 5.39 8.14 -2.39 -0.02 5.37 16 30 H 0.45 5.42 8.79 -96.75 -0.85 4.56 16 31 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.17 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.15 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.18 0.14 8.14 -2.38 -0.02 0.12 16 Total: -1.00 -101.49 352.31 -5.43 -106.92 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 0.25 Total: 6.17 kcal Atomic # 6 Polarization: -46.96 SS G_CDS: 3.87 Total: -43.09 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -2.13 Total: -99.07 kcal Atomic # 8 Polarization: -153.90 SS G_CDS: -8.80 Total: -162.70 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 16 Polarization: 144.86 SS G_CDS: -0.64 Total: 144.22 kcal Total: -101.49 -5.43 -106.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776116568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.204 kcal (2) G-P(sol) polarization free energy of solvation -101.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds