Wall clock time and date at job start Sat Apr 11 2020 05:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99756 * 2 1 4 4 H 1.48494 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46775 * 299.99959 * 3 2 1 6 6 H 1.48496 * 109.47206 * 59.99556 * 3 2 1 7 7 C 1.38807 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00033 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00430 * 359.97438 * 7 2 1 10 10 C 1.48162 * 126.39398 * 0.02562 * 9 7 2 11 11 C 1.55301 * 107.04029 * 184.97956 * 10 9 7 12 12 C 1.53699 * 101.81560 * 22.44752 * 11 10 9 13 13 H 1.08998 * 111.11435 * 78.60637 * 12 11 10 14 14 C 1.51978 * 114.99674 * 206.54969 * 12 11 10 15 15 C 1.53498 * 107.37178 * 175.28665 * 14 12 11 16 16 N 1.46592 * 110.93252 * 308.44144 * 15 14 12 17 17 C 1.34775 * 119.75903 * 227.68089 * 16 15 14 18 18 O 1.21635 * 120.00522 * 184.22760 * 17 16 15 19 19 C 1.47163 * 119.99508 * 3.95209 * 17 16 15 20 20 C 1.36041 * 123.46997 * 308.12666 * 19 17 16 21 21 S 1.70436 * 110.83482 * 180.02562 * 20 19 17 22 22 C 1.75507 * 92.45722 * 359.97438 * 21 20 19 23 23 C 1.32840 * 110.57903 * 359.72119 * 22 21 20 24 24 Cl 1.73598 * 123.47156 * 180.28532 * 23 22 21 25 25 C 1.47800 * 120.48763 * 47.40863 * 16 15 14 26 26 C 1.45497 * 126.40259 * 180.02562 * 9 7 2 27 27 H 1.09004 * 109.56741 * 265.86532 * 26 9 7 28 28 H 0.96998 * 120.00036 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.92092 * 304.32829 * 10 9 7 30 30 H 1.08997 * 109.91896 * 65.63677 * 10 9 7 31 31 H 1.09000 * 110.95626 * 140.57645 * 11 10 9 32 32 H 1.09002 * 110.96207 * 264.31129 * 11 10 9 33 33 H 1.09000 * 109.89615 * 294.87431 * 14 12 11 34 34 H 1.09001 * 109.89474 * 55.90199 * 14 12 11 35 35 H 1.09003 * 109.18117 * 188.01812 * 15 14 12 36 36 H 1.09002 * 109.04798 * 68.78549 * 15 14 12 37 37 H 1.07998 * 124.57996 * 0.03545 * 20 19 17 38 38 H 1.08004 * 124.70934 * 180.02562 * 22 21 20 39 39 H 1.09002 * 110.06393 * 68.20890 * 25 16 15 40 40 H 1.08995 * 110.06760 * 189.67002 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1466 -2.5532 -0.0005 11 6 -0.4340 -4.0739 0.1283 12 6 0.8685 -4.5878 0.7621 13 1 0.8919 -4.3828 1.8324 14 6 1.1979 -6.0412 0.4642 15 6 2.5759 -6.3331 1.0740 16 7 3.5607 -5.3359 0.6443 17 6 4.7635 -5.7372 0.1875 18 8 5.6117 -4.9132 -0.0976 19 6 5.0529 -7.1725 0.0395 20 6 4.8677 -8.0816 1.0345 21 16 5.3046 -9.6453 0.5158 22 6 5.7496 -9.0728 -1.0825 23 6 5.5568 -7.7620 -1.1794 24 17 5.8821 -6.8504 -2.6205 25 6 3.2421 -3.8938 0.7025 26 6 1.9083 -3.7213 -0.0005 27 1 1.9866 -4.0855 -1.0249 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5801 -2.0203 0.8457 30 1 -0.5628 -2.1745 -0.9340 31 1 -1.2851 -4.2556 0.7847 32 1 -0.5956 -4.5246 -0.8509 33 1 0.4469 -6.6913 0.9131 34 1 1.2297 -6.2009 -0.6136 35 1 2.9054 -7.3227 0.7572 36 1 2.4955 -6.3131 2.1609 37 1 4.4942 -7.8446 2.0197 38 1 6.1233 -9.7000 -1.8784 39 1 3.1621 -3.5702 1.7403 40 1 4.0139 -3.3193 0.1904 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042106145.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:06 Heat of formation + Delta-G solvation = 31.255053 kcal Electronic energy + Delta-G solvation = -25519.539335 eV Core-core repulsion = 21873.895150 eV Total energy + Delta-G solvation = -3645.644186 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.42729 -38.58498 -37.35866 -36.12249 -35.35898 -32.89814 -31.33691 -30.59188 -29.10609 -28.36032 -25.62925 -24.58196 -23.50108 -22.24853 -21.13400 -20.09482 -19.56818 -19.13392 -17.88394 -17.14795 -16.49751 -15.91678 -15.18914 -14.92757 -14.72569 -14.39244 -14.08740 -13.83323 -13.73312 -13.45873 -13.41609 -13.02062 -12.89368 -12.55350 -12.26129 -11.89784 -11.73661 -11.67318 -11.49059 -11.27207 -10.99332 -10.92769 -10.79409 -10.75019 -10.12194 -9.96074 -9.87894 -9.81866 -9.62812 -9.49886 -9.19733 -8.68780 -8.61928 -8.42903 -6.84435 -5.70691 -3.04404 0.43158 0.92162 1.33825 1.68417 2.33141 2.79705 3.22633 3.42535 3.49302 3.51805 4.30857 4.52394 4.54310 4.87503 4.94081 4.99065 5.11579 5.13575 5.38963 5.46233 5.50904 5.56242 5.61823 5.68683 5.77346 5.91243 6.02235 6.07391 6.13287 6.17500 6.37768 6.48378 6.56422 6.70617 6.75074 7.05982 7.51171 7.56682 7.62142 7.82638 8.23240 8.27118 9.20429 9.83308 10.49733 11.41691 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.003408 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.000981 B = 8213.784143 C = 9097.597676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.080 0.920 9 N -0.592 5.592 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.114 4.114 13 H 0.077 0.923 14 C -0.119 4.119 15 C 0.101 3.899 16 N -0.596 5.596 17 C 0.572 3.428 18 O -0.520 6.520 19 C -0.130 4.130 20 C -0.214 4.214 21 S 0.218 5.782 22 C -0.232 4.232 23 C -0.013 4.013 24 Cl -0.024 7.024 25 C 0.119 3.881 26 C 0.156 3.844 27 H 0.024 0.976 28 H 0.251 0.749 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.180 0.820 38 H 0.179 0.821 39 H 0.072 0.928 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.325 -23.650 2.129 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.355 4.355 8 H 0.098 0.902 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.133 4.133 13 H 0.096 0.904 14 C -0.158 4.158 15 C -0.022 4.022 16 N -0.329 5.329 17 C 0.356 3.644 18 O -0.396 6.396 19 C -0.149 4.149 20 C -0.351 4.351 21 S 0.483 5.517 22 C -0.368 4.368 23 C -0.052 4.052 24 Cl 0.005 6.995 25 C -0.003 4.003 26 C 0.047 3.953 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.197 0.803 38 H 0.196 0.804 39 H 0.090 0.910 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.759 -24.258 2.534 25.309 hybrid contribution 0.327 2.400 -0.785 2.546 sum 7.085 -21.858 1.749 23.044 Atomic orbital electron populations 1.69955 1.04886 1.24935 1.57119 1.24777 0.95677 0.97635 1.02153 0.86076 0.78959 0.83806 0.77203 1.20342 1.21759 1.21765 1.19101 0.90491 0.82244 1.43714 0.90189 1.44177 1.01659 0.99172 1.86674 1.21546 0.83658 0.88479 1.00993 1.22729 0.95969 0.99665 0.99257 1.22277 0.97474 0.93387 1.00198 0.90446 1.21726 0.95194 0.97480 1.01360 1.21868 0.89459 0.91867 0.99046 1.48163 1.13525 1.08064 1.63151 1.17530 0.82580 0.86578 0.77691 1.90839 1.45604 1.53543 1.49642 1.20029 1.06207 0.95471 0.93144 1.25613 1.07004 0.98180 1.04348 1.83073 1.59892 1.05609 1.03113 1.25399 1.10900 0.97383 1.03123 1.20655 1.03296 0.91457 0.89776 1.98413 1.93600 1.73896 1.33614 1.21755 0.99148 0.77800 1.01589 1.20973 0.90948 0.87654 0.95684 0.95869 0.93832 0.92603 0.94433 0.92230 0.92569 0.90815 0.91391 0.89918 0.91660 0.80277 0.80377 0.90964 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.04 10.44 55.49 0.58 -26.46 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.23 -6.33 9.88 -15.06 -0.15 -6.48 16 8 H 0.08 2.20 7.41 -52.49 -0.39 1.81 16 9 N -0.59 -14.96 3.35 -162.94 -0.55 -15.50 16 10 C 0.18 4.25 5.45 -1.91 -0.01 4.24 16 11 C -0.14 -2.49 6.54 -25.15 -0.16 -2.66 16 12 C -0.11 -1.90 2.62 -89.53 -0.23 -2.14 16 13 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 14 C -0.12 -1.52 5.70 -26.99 -0.15 -1.67 16 15 C 0.10 1.19 5.43 -3.73 -0.02 1.17 16 16 N -0.60 -9.38 3.01 -174.36 -0.53 -9.91 16 17 C 0.57 9.46 7.06 -12.64 -0.09 9.37 16 18 O -0.52 -10.63 16.21 5.25 0.09 -10.54 16 19 C -0.13 -1.67 4.94 -104.61 -0.52 -2.18 16 20 C -0.21 -1.93 8.42 29.94 0.25 -1.68 16 21 S 0.22 1.44 23.02 -107.50 -2.47 -1.03 16 22 C -0.23 -1.99 11.00 28.87 0.32 -1.67 16 23 C -0.01 -0.15 6.49 -38.98 -0.25 -0.41 16 24 Cl -0.02 -0.33 28.56 -51.86 -1.48 -1.81 16 25 C 0.12 2.28 5.68 -3.96 -0.02 2.26 16 26 C 0.16 3.23 2.76 -67.85 -0.19 3.04 16 27 H 0.02 0.53 7.90 -51.93 -0.41 0.12 16 28 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.06 1.47 7.21 -51.93 -0.37 1.10 16 30 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.92 7.97 -51.93 -0.41 0.51 16 35 H 0.08 0.81 4.80 -51.93 -0.25 0.56 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.18 1.28 7.51 -52.49 -0.39 0.88 16 38 H 0.18 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.09 2.03 6.79 -51.93 -0.35 1.68 16 LS Contribution 345.47 15.07 5.21 5.21 Total: -1.00 -32.77 345.47 -10.59 -43.36 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -5.08 Total: -1.70 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -1.33 Total: 0.93 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.49 Total: -51.86 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.47 Total: -1.03 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.48 Total: -1.81 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.77 -10.59 -43.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042106145.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.610 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds