Wall clock time and date at job start Sat Apr 11 2020 05:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99992 * 2 1 4 4 H 1.48494 * 109.47133 * 240.00346 * 3 2 1 5 5 H 1.48501 * 109.46937 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46928 * 120.00570 * 3 2 1 7 7 C 1.37877 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99930 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00110 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40063 * 66.46644 * 9 7 2 11 11 O 1.42097 * 106.40586 * 293.54222 * 9 7 2 12 12 N 1.65608 * 107.21621 * 180.02562 * 9 7 2 13 13 C 1.47181 * 135.99325 * 269.62972 * 12 9 7 14 14 C 1.53106 * 87.74330 * 153.48562 * 13 12 9 15 15 C 1.47178 * 135.99513 * 90.00325 * 12 9 7 16 16 C 1.52435 * 114.21586 * 139.76814 * 14 13 12 17 17 N 1.46296 * 109.56501 * 177.93657 * 16 14 13 18 18 C 1.46504 * 118.72926 * 164.07443 * 17 16 14 19 19 C 1.52992 * 109.46896 * 269.99967 * 18 17 16 20 20 F 1.39897 * 109.47406 * 299.99696 * 19 18 17 21 21 F 1.39902 * 109.47468 * 60.00187 * 19 18 17 22 22 C 1.33712 * 122.54144 * 344.07163 * 17 16 14 23 23 O 1.21287 * 118.35782 * 183.32963 * 22 17 16 24 24 C 1.50165 * 123.28859 * 3.31643 * 22 17 16 25 25 O 1.42547 * 114.51385 * 271.90343 * 14 13 12 26 26 H 0.97001 * 120.00280 * 359.97438 * 1 2 3 27 27 H 1.09004 * 113.49044 * 268.17336 * 13 12 9 28 28 H 1.08991 * 113.49749 * 38.69481 * 13 12 9 29 29 H 1.08996 * 113.49349 * 321.29961 * 15 12 9 30 30 H 1.08997 * 113.49056 * 91.81662 * 15 12 9 31 31 H 1.08997 * 109.46126 * 297.96646 * 16 14 13 32 32 H 1.09004 * 109.45317 * 57.90830 * 16 14 13 33 33 H 1.08999 * 109.47034 * 30.00114 * 18 17 16 34 34 H 1.09002 * 109.46937 * 150.00112 * 18 17 16 35 35 H 1.09005 * 109.46894 * 180.02562 * 19 18 17 36 36 H 1.08997 * 109.34681 * 222.04790 * 24 22 17 37 37 H 1.08993 * 109.22681 * 102.41621 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4518 -2.7956 1.2494 12 7 2.2483 -3.9354 -0.0005 13 6 2.9625 -4.7168 -1.0230 14 6 4.0852 -4.9146 -0.0010 15 6 2.9673 -4.7124 1.0219 16 6 4.6906 -6.3136 0.0000 17 7 5.7800 -6.3754 0.9744 18 6 6.2694 -7.6886 1.4012 19 6 5.4779 -8.1549 2.6246 20 9 5.6432 -7.2349 3.6654 21 9 4.1214 -8.2474 2.2949 22 6 6.3463 -5.2796 1.4905 23 8 7.2849 -5.4176 2.2462 24 6 5.8786 -3.8865 1.1813 25 8 5.0729 -3.8869 -0.0010 26 1 -0.4850 0.8400 0.0004 27 1 2.4552 -5.6423 -1.2955 28 1 3.2612 -4.1278 -1.8901 29 1 3.2702 -4.1195 1.8850 30 1 2.4612 -5.6366 1.3009 31 1 3.9237 -7.0410 0.2662 32 1 5.0781 -6.5421 -0.9929 33 1 6.1407 -8.4055 0.5903 34 1 7.3263 -7.6165 1.6581 35 1 5.8424 -9.1318 2.9424 36 1 6.7434 -3.2408 1.0288 37 1 5.2907 -3.5111 2.0187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275490988.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:51 Heat of formation + Delta-G solvation = -243.621035 kcal Electronic energy + Delta-G solvation = -29271.085981 eV Core-core repulsion = 24618.583579 eV Total energy + Delta-G solvation = -4652.502402 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.078 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -49.81322 -47.84951 -42.29016 -40.32439 -37.45128 -37.42013 -36.73235 -36.21041 -35.20536 -31.69470 -30.55682 -28.34828 -28.22155 -27.06818 -26.39231 -24.38927 -22.21764 -20.71019 -19.91944 -19.26654 -18.73510 -18.62619 -18.34316 -18.06845 -17.87001 -17.26991 -17.11841 -16.77846 -16.44641 -16.21177 -15.96887 -15.63438 -15.26915 -14.87484 -14.83054 -14.64919 -14.43110 -14.21450 -14.01152 -13.88971 -13.45806 -13.35854 -13.22149 -13.11285 -13.06085 -13.01866 -12.58648 -12.53325 -12.42057 -12.34194 -12.27294 -11.77323 -11.31082 -11.26062 -11.05190 -10.53089 -9.96135 -9.87193 -8.77622 -7.50758 0.16281 1.31165 1.31790 1.34132 1.47322 1.62790 2.18389 2.29844 2.54751 2.73226 3.00063 3.12158 3.16920 3.45700 3.54122 3.68797 3.77804 3.81841 3.92071 3.95757 4.12732 4.32596 4.41646 4.44589 4.50920 4.52980 4.61164 4.63939 4.66939 4.74543 5.15111 5.22099 5.35997 5.52954 5.78009 5.92719 6.14400 6.75762 6.85343 8.18176 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.018249 B = 0.003881 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.997629 B = 7213.183292 C = 7859.789310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.990 3.010 4 H -0.249 1.249 5 H -0.261 1.261 6 H -0.253 1.253 7 C -1.036 5.036 8 H 0.117 0.883 9 S 2.743 3.257 10 O -1.035 7.035 11 O -1.042 7.042 12 N -1.054 6.054 13 C 0.146 3.854 14 C 0.065 3.935 15 C 0.097 3.903 16 C 0.106 3.894 17 N -0.602 5.602 18 C 0.059 3.941 19 C 0.232 3.768 20 F -0.226 7.226 21 F -0.214 7.214 22 C 0.493 3.507 23 O -0.565 6.565 24 C 0.044 3.956 25 O -0.345 6.345 26 H 0.300 0.700 27 H 0.138 0.862 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.114 0.886 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.155 0.845 34 H 0.114 0.886 35 H 0.162 0.838 36 H 0.148 0.852 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.466 -18.406 -0.493 24.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.808 3.192 4 H -0.173 1.173 5 H -0.185 1.185 6 H -0.176 1.176 7 C -1.170 5.170 8 H 0.135 0.865 9 S 2.848 3.152 10 O -1.026 7.026 11 O -1.033 7.033 12 N -0.893 5.893 13 C 0.021 3.979 14 C 0.022 3.978 15 C -0.029 4.029 16 C -0.016 4.016 17 N -0.335 5.335 18 C -0.064 4.064 19 C 0.178 3.822 20 F -0.207 7.207 21 F -0.195 7.195 22 C 0.281 3.719 23 O -0.445 6.445 24 C -0.035 4.035 25 O -0.263 6.263 26 H 0.110 0.890 27 H 0.155 0.845 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.173 0.827 34 H 0.133 0.867 35 H 0.179 0.821 36 H 0.165 0.835 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.606 -18.199 -0.262 23.337 hybrid contribution 0.128 1.468 0.597 1.590 sum 14.734 -16.731 0.335 22.296 Atomic orbital electron populations 1.69973 1.08726 1.32473 1.41528 1.26026 0.95392 1.05315 0.87497 0.85169 0.78807 0.74498 0.80739 1.17263 1.18533 1.17640 1.30904 1.07106 1.12394 1.66571 0.86496 0.99197 0.71561 0.73155 0.71305 1.93297 1.74002 1.88264 1.46990 1.93295 1.74273 1.88310 1.47423 1.60098 1.61253 1.50493 1.17466 1.22712 0.86465 0.97086 0.91676 1.22908 0.87765 0.88481 0.98606 1.23230 0.90836 0.96249 0.92553 1.22246 0.89780 0.95155 0.94462 1.47459 1.36387 1.05940 1.43673 1.22989 1.00665 0.85237 0.97530 1.23092 0.78379 0.94588 0.86150 1.92990 1.95312 1.70975 1.61464 1.92961 1.36608 1.96995 1.92947 1.20957 0.82539 0.88320 0.80049 1.90720 1.29180 1.87194 1.37380 1.22889 0.97099 0.93562 0.89905 1.88142 1.46266 1.52959 1.38895 0.89011 0.84469 0.89266 0.91838 0.86861 0.86007 0.86006 0.82682 0.86744 0.82117 0.83495 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.39 13.19 21.45 0.28 -54.11 16 2 C 0.07 4.01 5.46 84.66 0.46 4.47 16 3 Si 0.99 42.33 29.54 68.60 2.03 44.35 16 4 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 6 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 7 C -1.04 -58.82 9.75 67.73 0.66 -58.16 16 8 H 0.12 6.12 7.81 -2.91 -0.02 6.10 16 9 S 2.74 151.46 5.55 -56.49 -0.31 151.15 16 10 O -1.04 -62.40 18.02 -128.00 -2.31 -64.71 16 11 O -1.04 -64.35 18.02 -128.00 -2.31 -66.66 16 12 N -1.05 -41.76 4.23 -550.52 -2.33 -44.09 16 13 C 0.15 3.93 8.18 83.41 0.68 4.61 16 14 C 0.07 1.56 1.23 -10.99 -0.01 1.55 16 15 C 0.10 2.99 7.91 83.33 0.66 3.65 16 16 C 0.11 1.49 5.76 86.23 0.50 1.98 16 17 N -0.60 -10.37 2.77 -825.70 -2.28 -12.65 16 18 C 0.06 0.61 5.65 86.38 0.49 1.09 16 19 C 0.23 2.91 5.60 71.98 0.40 3.31 16 20 F -0.23 -5.25 16.22 44.97 0.73 -4.52 16 21 F -0.21 -3.38 15.97 44.97 0.72 -2.66 16 22 C 0.49 11.97 7.12 87.66 0.62 12.59 16 23 O -0.57 -16.73 15.68 -3.05 -0.05 -16.77 16 24 C 0.04 1.11 6.69 71.07 0.48 1.59 16 25 O -0.34 -9.57 10.69 -148.98 -1.59 -11.17 16 26 H 0.30 16.34 8.31 -92.71 -0.77 15.56 16 27 H 0.14 2.51 8.10 -2.38 -0.02 2.49 16 28 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.06 2.12 7.11 -2.39 -0.02 2.10 16 30 H 0.11 2.87 7.90 -2.39 -0.02 2.85 16 31 H 0.12 1.24 6.68 -2.39 -0.02 1.23 16 32 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.16 0.21 8.04 -2.39 -0.02 0.19 16 34 H 0.11 1.35 7.19 -2.39 -0.02 1.34 16 35 H 0.16 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.15 3.21 8.14 -2.39 -0.02 3.19 16 37 H 0.09 2.33 7.25 -2.39 -0.02 2.31 16 Total: -1.00 -91.03 335.52 -1.36 -92.39 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.12 Total: 12.76 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: 4.94 Total: -23.31 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -4.33 Total: -110.85 kcal Atomic # 8 Polarization: -153.05 SS G_CDS: -6.25 Total: -159.31 kcal Atomic # 9 Polarization: -8.63 SS G_CDS: 1.45 Total: -7.19 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 151.46 SS G_CDS: -0.31 Total: 151.15 kcal Total: -91.03 -1.36 -92.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275490988.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.227 kcal (2) G-P(sol) polarization free energy of solvation -91.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds