Wall clock time and date at job start Sat Apr 11 2020 05:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00353 * 2 1 4 4 H 1.48500 * 109.47142 * 270.00157 * 3 2 1 5 5 H 1.48504 * 109.47035 * 30.00008 * 3 2 1 6 6 H 1.48504 * 109.47096 * 150.00015 * 3 2 1 7 7 C 1.37888 * 119.99661 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99609 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99844 * 359.97438 * 7 2 1 10 10 O 1.42092 * 106.40312 * 66.46486 * 9 7 2 11 11 O 1.42104 * 106.40097 * 293.54415 * 9 7 2 12 12 N 1.65606 * 107.21460 * 180.02562 * 9 7 2 13 13 C 1.47662 * 134.45626 * 90.00078 * 12 9 7 14 14 C 1.53483 * 85.98365 * 155.64157 * 13 12 9 15 15 C 1.47657 * 134.45417 * 269.94820 * 12 9 7 16 16 C 1.52767 * 113.56101 * 137.64567 * 14 13 12 17 17 O 1.43383 * 108.25845 * 176.82536 * 16 14 13 18 18 C 1.42815 * 113.34695 * 294.38214 * 17 16 14 19 19 C 1.50282 * 110.49505 * 51.29728 * 18 17 16 20 20 O 1.21279 * 118.96682 * 161.31989 * 19 18 17 21 21 N 1.34264 * 122.05896 * 341.60876 * 19 18 17 22 22 C 1.46503 * 119.38220 * 181.95825 * 21 19 18 23 23 C 1.52995 * 109.47075 * 278.26029 * 22 21 19 24 24 F 1.39901 * 109.47154 * 297.08699 * 23 22 21 25 25 F 1.39893 * 109.47228 * 57.08771 * 23 22 21 26 26 H 0.97003 * 119.99614 * 0.02562 * 1 2 3 27 27 H 1.09002 * 113.79295 * 41.37826 * 13 12 9 28 28 H 1.09002 * 113.78946 * 269.90552 * 13 12 9 29 29 H 1.09001 * 113.78890 * 90.09632 * 15 12 9 30 30 H 1.09000 * 113.79420 * 318.62552 * 15 12 9 31 31 H 1.08995 * 109.71128 * 57.13494 * 16 14 13 32 32 H 1.09001 * 109.73924 * 296.53680 * 16 14 13 33 33 H 1.09001 * 109.26482 * 291.04400 * 18 17 16 34 34 H 1.08993 * 109.27589 * 171.56732 * 18 17 16 35 35 H 1.09002 * 109.46902 * 38.26323 * 22 21 19 36 36 H 1.09004 * 109.46808 * 158.25508 * 22 21 19 37 37 H 1.09003 * 109.46670 * 177.08522 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 16 1.1233 -2.7200 -0.0005 10 8 0.4508 -2.7951 -1.2500 11 8 0.4516 -2.7955 1.2494 12 7 2.2481 -3.9355 -0.0005 13 6 2.9505 -4.6946 1.0535 14 6 3.1121 -5.7989 -0.0001 15 6 2.9498 -4.6952 -1.0545 16 6 4.4969 -6.4440 -0.0012 17 8 4.4990 -7.5017 -0.9693 18 6 3.6256 -8.5799 -0.6314 19 6 2.2513 -8.0631 -0.3109 20 8 1.3135 -8.8317 -0.3387 21 7 2.0283 -6.7761 -0.0004 22 6 0.6714 -6.3444 0.3443 23 6 -0.1273 -6.1009 -0.9377 24 9 0.4625 -5.0609 -1.6641 25 9 -0.1329 -7.2659 -1.7121 26 1 -0.4850 0.8401 -0.0004 27 1 2.3130 -4.9764 1.8915 28 1 3.8925 -4.2440 1.3662 29 1 3.8916 -4.2448 -1.3681 30 1 2.3117 -4.9774 -1.8920 31 1 4.7143 -6.8496 0.9868 32 1 5.2489 -5.7010 -0.2670 33 1 4.0232 -9.1065 0.2362 34 1 3.5634 -9.2698 -1.4729 35 1 0.1828 -7.1192 0.9352 36 1 0.7196 -5.4221 0.9233 37 1 -1.1516 -5.8299 -0.6815 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275490996.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:56 Heat of formation + Delta-G solvation = -230.542903 kcal Electronic energy + Delta-G solvation = -30663.787207 eV Core-core repulsion = 26011.851916 eV Total energy + Delta-G solvation = -4651.935291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.078 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -49.96631 -47.95555 -42.29218 -39.84963 -38.42039 -37.30944 -36.07735 -35.62207 -35.17792 -31.63593 -30.66110 -28.29346 -28.07082 -27.28214 -26.12672 -24.03965 -22.88326 -20.74896 -19.79262 -19.18575 -18.89766 -18.48484 -18.35187 -18.13673 -17.76552 -17.23020 -17.10403 -16.86207 -16.31545 -16.20020 -15.90018 -15.58745 -15.36898 -14.98928 -14.64214 -14.52395 -14.39778 -14.25232 -13.94271 -13.81591 -13.51226 -13.36456 -13.31769 -13.03318 -12.94386 -12.64249 -12.58263 -12.40454 -12.35710 -12.29670 -11.85391 -11.81028 -11.35365 -11.26801 -10.97060 -10.47879 -10.03068 -9.79086 -8.74994 -7.49001 0.28722 1.30631 1.31550 1.32564 1.48032 1.52222 2.18215 2.55945 2.64792 2.75500 2.80322 3.12853 3.23014 3.41777 3.50340 3.56067 3.65989 3.81120 3.88485 4.06559 4.15563 4.28159 4.31608 4.48458 4.53980 4.61708 4.62343 4.76926 4.81210 4.88982 5.06096 5.22421 5.47954 5.57267 5.82047 5.92651 6.23487 6.77737 6.86371 8.18811 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.020728 B = 0.004811 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.502430 B = 5818.363150 C = 6599.476826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.068 3.932 3 Si 0.987 3.013 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.244 1.244 7 C -1.051 5.051 8 H 0.118 0.882 9 S 2.733 3.267 10 O -1.020 7.020 11 O -1.040 7.040 12 N -1.048 6.048 13 C 0.120 3.880 14 C 0.107 3.893 15 C 0.104 3.896 16 C 0.070 3.930 17 O -0.372 6.372 18 C 0.060 3.940 19 C 0.483 3.517 20 O -0.560 6.560 21 N -0.579 5.579 22 C 0.062 3.938 23 C 0.220 3.780 24 F -0.189 7.189 25 F -0.204 7.204 26 H 0.298 0.702 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.153 0.847 33 H 0.125 0.875 34 H 0.140 0.860 35 H 0.123 0.877 36 H 0.106 0.894 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.819 -13.108 2.819 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.167 1.167 7 C -1.184 5.184 8 H 0.136 0.864 9 S 2.836 3.164 10 O -1.011 7.011 11 O -1.030 7.030 12 N -0.888 5.888 13 C -0.005 4.005 14 C 0.018 3.982 15 C -0.022 4.022 16 C -0.007 4.007 17 O -0.289 6.289 18 C -0.019 4.019 19 C 0.273 3.727 20 O -0.439 6.439 21 N -0.311 5.311 22 C -0.062 4.062 23 C 0.165 3.835 24 F -0.170 7.170 25 F -0.185 7.185 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.155 0.845 29 H 0.137 0.863 30 H 0.095 0.905 31 H 0.123 0.877 32 H 0.171 0.829 33 H 0.143 0.857 34 H 0.158 0.842 35 H 0.141 0.859 36 H 0.124 0.876 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.175 -13.431 2.600 17.664 hybrid contribution -0.348 1.619 -0.091 1.658 sum 10.827 -11.812 2.509 16.218 Atomic orbital electron populations 1.69984 1.08794 1.32222 1.41781 1.26028 0.95371 1.05436 0.87599 0.85179 0.79363 0.74964 0.80007 1.18101 1.18773 1.16687 1.31193 1.07300 1.13501 1.66360 0.86413 0.99539 0.72473 0.72741 0.71608 1.93353 1.73697 1.87760 1.46286 1.93298 1.74200 1.88366 1.47178 1.60477 1.58897 1.52915 1.16462 1.23306 0.98881 0.87191 0.91152 1.22750 0.89160 0.88818 0.97487 1.23631 0.97764 0.88170 0.92604 1.23278 0.91817 0.90481 0.95141 1.88195 1.62684 1.30149 1.47906 1.22858 0.82741 0.90415 1.05918 1.22110 0.93991 0.81045 0.75532 1.90749 1.45182 1.55549 1.52394 1.47334 1.07377 1.08503 1.67931 1.22682 0.84243 1.04371 0.94936 1.22810 1.00261 0.73429 0.87029 1.93085 1.85632 1.58085 1.80220 1.92985 1.97778 1.49879 1.77886 0.89245 0.89682 0.84536 0.86296 0.90461 0.87748 0.82921 0.85721 0.84246 0.85916 0.87614 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.47 13.19 21.45 0.28 -53.19 16 2 C 0.07 3.77 5.46 84.66 0.46 4.23 16 3 Si 0.99 40.75 29.54 68.60 2.03 42.78 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.24 -9.22 7.11 99.48 0.71 -8.51 16 7 C -1.05 -57.06 9.75 67.74 0.66 -56.40 16 8 H 0.12 5.69 7.81 -2.91 -0.02 5.67 16 9 S 2.73 142.64 4.89 -56.49 -0.28 142.36 16 10 O -1.02 -59.87 15.11 -128.00 -1.93 -61.81 16 11 O -1.04 -59.31 17.75 -128.00 -2.27 -61.58 16 12 N -1.05 -38.15 2.30 -535.97 -1.23 -39.38 16 13 C 0.12 2.91 7.53 86.31 0.65 3.56 16 14 C 0.11 2.35 1.56 5.38 0.01 2.36 16 15 C 0.10 3.05 7.36 86.32 0.63 3.68 16 16 C 0.07 0.86 6.09 71.90 0.44 1.30 16 17 O -0.37 -5.95 10.84 -148.98 -1.61 -7.57 16 18 C 0.06 0.94 6.94 71.10 0.49 1.44 16 19 C 0.48 12.26 7.14 87.61 0.63 12.89 16 20 O -0.56 -18.17 15.02 -3.03 -0.05 -18.22 16 21 N -0.58 -15.35 2.65 -787.22 -2.09 -17.43 16 22 C 0.06 1.92 5.02 86.38 0.43 2.35 16 23 C 0.22 7.87 5.60 71.98 0.40 8.27 16 24 F -0.19 -8.14 9.39 44.97 0.42 -7.71 16 25 F -0.20 -7.59 15.08 44.97 0.68 -6.91 16 26 H 0.30 15.99 8.31 -92.71 -0.77 15.22 16 27 H 0.08 2.09 7.06 -2.39 -0.02 2.07 16 28 H 0.14 2.20 8.09 -2.39 -0.02 2.18 16 29 H 0.12 2.67 7.90 -2.39 -0.02 2.65 16 30 H 0.08 2.74 5.50 -2.39 -0.01 2.72 16 31 H 0.10 0.67 8.13 -2.39 -0.02 0.65 16 32 H 0.15 1.06 7.86 -2.39 -0.02 1.05 16 33 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.12 3.37 7.63 -2.39 -0.02 3.35 16 36 H 0.11 3.53 4.84 -2.39 -0.01 3.52 16 37 H 0.12 4.00 8.14 -2.39 -0.02 3.98 16 Total: -1.00 -86.21 317.06 -0.11 -86.32 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 1.13 Total: 18.67 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 4.81 Total: -16.32 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -3.04 Total: -110.00 kcal Atomic # 8 Polarization: -143.31 SS G_CDS: -5.87 Total: -149.18 kcal Atomic # 9 Polarization: -15.72 SS G_CDS: 1.10 Total: -14.62 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Atomic # 16 Polarization: 142.64 SS G_CDS: -0.28 Total: 142.36 kcal Total: -86.21 -0.11 -86.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275490996.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.226 kcal (2) G-P(sol) polarization free energy of solvation -86.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds