Wall clock time and date at job start Sat Apr 11 2020 05:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86797 * 119.99931 * 2 1 4 4 H 1.48505 * 109.47023 * 269.99835 * 3 2 1 5 5 H 1.48501 * 109.47039 * 29.99689 * 3 2 1 6 6 H 1.48500 * 109.47703 * 149.99722 * 3 2 1 7 7 C 1.38800 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00219 * 359.97438 * 7 2 1 9 9 S 1.76203 * 120.00111 * 180.02562 * 7 2 1 10 10 C 1.81003 * 99.99947 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46941 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99871 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00073 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99983 * 185.29914 * 13 11 10 15 15 C 1.53001 * 115.54983 * 301.55781 * 14 13 11 16 16 N 1.46502 * 109.47446 * 273.92070 * 15 14 13 17 17 C 1.34769 * 120.00333 * 184.91464 * 16 15 14 18 18 O 1.21639 * 120.00116 * 4.95501 * 17 16 15 19 19 C 1.47192 * 120.00331 * 184.95257 * 17 16 15 20 20 C 1.44425 * 123.46215 * 174.76840 * 19 17 16 21 21 C 1.32774 * 113.08209 * 179.97438 * 20 19 17 22 22 S 1.75507 * 110.57524 * 359.74275 * 21 20 19 23 23 C 1.36008 * 123.45713 * 354.75971 * 19 17 16 24 24 C 1.52995 * 117.50035 * 87.23131 * 14 13 11 25 25 C 1.53003 * 117.49935 * 155.89002 * 14 13 11 26 26 H 0.96993 * 120.00200 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47016 * 60.00094 * 10 9 7 28 28 H 1.08999 * 109.46728 * 299.99622 * 10 9 7 29 29 H 0.97000 * 119.99440 * 5.29333 * 13 11 10 30 30 H 1.09002 * 109.47225 * 153.91979 * 15 14 13 31 31 H 1.08997 * 109.47010 * 33.91962 * 15 14 13 32 32 H 0.97002 * 119.99818 * 4.90963 * 16 15 14 33 33 H 1.07994 * 123.45787 * 359.97438 * 20 19 17 34 34 H 1.07997 * 124.71555 * 179.97438 * 21 20 19 35 35 H 1.08004 * 124.59400 * 0.02562 * 23 19 17 36 36 H 1.09005 * 117.49583 * 215.00173 * 24 14 13 37 37 H 1.08999 * 117.50258 * 0.02562 * 24 14 13 38 38 H 1.08996 * 117.49489 * 359.97438 * 25 14 13 39 39 H 1.08997 * 117.49848 * 144.96594 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0014 9 16 3.7724 -1.2020 0.0012 10 6 4.0867 -2.9845 0.0009 11 6 5.5732 -3.2324 0.0008 12 8 6.3442 -2.2961 0.0005 13 7 6.0459 -4.4945 0.0011 14 6 7.4858 -4.7374 0.1182 15 6 8.3534 -4.0969 -0.9672 16 7 8.4246 -4.9904 -2.1260 17 6 9.2177 -4.6783 -3.1699 18 8 9.9423 -3.7030 -3.1130 19 6 9.2072 -5.5176 -4.3791 20 6 9.9417 -5.1938 -5.5797 21 6 9.7859 -6.0932 -6.5438 22 16 8.7288 -7.3897 -6.0128 23 6 8.5050 -6.6780 -4.4803 24 6 8.0738 -4.8334 1.5274 25 6 7.9311 -6.0933 0.6699 26 1 -0.4850 0.8400 -0.0004 27 1 3.6441 -3.4313 -0.8893 28 1 3.6435 -3.4317 0.8907 29 1 5.4326 -5.2421 -0.0761 30 1 9.3570 -3.9273 -0.5771 31 1 7.9150 -3.1456 -1.2684 32 1 7.9008 -5.8068 -2.1419 33 1 10.5547 -4.3106 -5.6826 34 1 10.2486 -6.0370 -7.5180 35 1 7.8923 -7.0945 -3.6944 36 1 9.0788 -4.4402 1.6812 37 1 7.3893 -4.7163 2.3675 38 1 7.1526 -6.8044 0.9461 39 1 8.8418 -6.5292 0.2592 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285906814.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:08 Heat of formation + Delta-G solvation = -11.407690 kcal Electronic energy + Delta-G solvation = -23653.522589 eV Core-core repulsion = 20008.072115 eV Total energy + Delta-G solvation = -3645.450475 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.42503 -39.56551 -37.59739 -36.95979 -34.40889 -32.91179 -32.45613 -30.44512 -29.23437 -27.31369 -25.63825 -24.98191 -23.00169 -21.84477 -21.37831 -20.03093 -19.34893 -18.46846 -17.93758 -17.34435 -16.68692 -16.51287 -15.66271 -15.33549 -15.26993 -14.99168 -14.75661 -14.55513 -13.97864 -13.57039 -13.50202 -13.41378 -13.35472 -12.86300 -12.81114 -12.68014 -12.64930 -12.13486 -11.86955 -11.50828 -11.29265 -11.18419 -11.01797 -10.77409 -10.60825 -10.11592 -9.87071 -9.62831 -9.45501 -9.17454 -9.06012 -9.00823 -8.78727 -8.52713 -6.94315 -6.30947 -4.02994 0.39200 1.15012 1.52227 1.70219 2.63635 2.77972 2.86564 3.15666 3.16806 3.32805 3.49848 3.52087 3.59655 4.22666 4.31682 4.34571 4.51161 4.55795 4.67204 4.74755 4.86667 4.99462 5.08249 5.09924 5.23753 5.37432 5.43456 5.49566 5.60866 5.69732 5.71595 5.78066 5.87333 5.92765 5.96634 6.18755 6.48670 7.26425 7.48994 7.92030 8.01584 8.38974 8.40709 9.15264 10.78250 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.012667 B = 0.002501 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.852862 B =11192.458561 C =12163.726792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.138 6.138 10 C -0.124 4.124 11 C 0.534 3.466 12 O -0.507 6.507 13 N -0.708 5.708 14 C 0.090 3.910 15 C 0.147 3.853 16 N -0.720 5.720 17 C 0.575 3.425 18 O -0.532 6.532 19 C -0.150 4.150 20 C -0.085 4.085 21 C -0.236 4.236 22 S 0.184 5.816 23 C -0.213 4.213 24 C -0.161 4.161 25 C -0.170 4.170 26 H 0.271 0.729 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.402 0.598 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.397 0.603 33 H 0.155 0.845 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.879 -21.072 -7.327 29.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.088 5.912 10 C -0.275 4.275 11 C 0.320 3.680 12 O -0.380 6.380 13 N -0.362 5.362 14 C 0.001 3.999 15 C 0.023 3.977 16 N -0.372 5.372 17 C 0.361 3.639 18 O -0.410 6.410 19 C -0.169 4.169 20 C -0.114 4.114 21 C -0.371 4.371 22 S 0.450 5.550 23 C -0.352 4.352 24 C -0.200 4.200 25 C -0.208 4.208 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.237 0.763 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.231 0.769 33 H 0.173 0.827 34 H 0.188 0.812 35 H 0.187 0.813 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 19.949 -19.964 -7.956 29.323 hybrid contribution -1.059 0.177 0.719 1.292 sum 18.890 -19.787 -7.237 28.297 Atomic orbital electron populations 1.69933 1.05921 1.27811 1.48001 1.24711 0.94455 0.98987 0.93138 0.86741 0.81897 0.83260 0.79996 1.19171 1.19913 1.15889 1.22308 0.88261 0.97520 1.58893 0.89405 1.84843 1.09276 0.99686 1.97418 1.23280 0.93712 1.04681 1.05786 1.20342 0.90589 0.82083 0.74969 1.90704 1.58519 1.42056 1.46687 1.45373 1.05236 1.08329 1.77284 1.20685 0.82496 1.00917 0.95790 1.21170 0.99104 0.93804 0.83587 1.45822 1.46726 1.26209 1.18451 1.17583 0.79886 0.84324 0.82144 1.90822 1.40320 1.28208 1.81644 1.20354 1.03166 0.96846 0.96502 1.21175 0.99323 1.00388 0.90518 1.25537 1.07202 0.99769 1.04545 1.83091 1.43537 1.23828 1.04590 1.25667 1.05134 1.00352 1.04026 1.23418 1.02998 0.99806 0.93779 1.23339 1.03546 0.90507 1.03426 0.91910 0.88566 0.88395 0.76313 0.90066 0.88503 0.76878 0.82746 0.81223 0.81348 0.87701 0.87769 0.87857 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.49 13.97 55.49 0.78 -25.71 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.82 27.74 -169.99 -4.71 17.11 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.23 -5.98 6.74 56.52 0.38 -5.60 16 7 C -0.52 -14.93 10.04 30.94 0.31 -14.61 16 8 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 9 S -0.14 -3.47 18.55 -107.50 -1.99 -5.46 16 10 C -0.12 -2.31 6.16 36.01 0.22 -2.08 16 11 C 0.53 8.96 7.66 -10.99 -0.08 8.87 16 12 O -0.51 -10.46 14.09 5.55 0.08 -10.38 16 13 N -0.71 -8.10 5.48 -47.61 -0.26 -8.36 16 14 C 0.09 0.92 1.96 -131.82 -0.26 0.66 16 15 C 0.15 1.82 5.60 -4.04 -0.02 1.80 16 16 N -0.72 -7.48 5.41 -61.46 -0.33 -7.82 16 17 C 0.58 7.34 7.78 -12.63 -0.10 7.24 16 18 O -0.53 -8.95 16.78 5.24 0.09 -8.86 16 19 C -0.15 -1.53 5.98 -104.63 -0.63 -2.15 16 20 C -0.09 -0.81 10.11 -39.02 -0.39 -1.20 16 21 C -0.24 -1.66 11.12 28.86 0.32 -1.34 16 22 S 0.18 1.11 23.02 -107.50 -2.48 -1.37 16 23 C -0.21 -1.55 10.38 29.93 0.31 -1.24 16 24 C -0.16 -1.47 10.11 -26.70 -0.27 -1.74 16 25 C -0.17 -1.13 9.93 -26.69 -0.26 -1.40 16 26 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 28 H 0.10 1.69 8.14 -51.92 -0.42 1.26 16 29 H 0.40 3.35 8.83 -40.82 -0.36 2.99 16 30 H 0.08 1.01 7.86 -51.93 -0.41 0.60 16 31 H 0.10 1.61 6.24 -51.93 -0.32 1.29 16 32 H 0.40 2.92 6.88 -40.82 -0.28 2.64 16 33 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.17 0.79 7.03 -52.48 -0.37 0.42 16 36 H 0.10 0.91 8.05 -51.93 -0.42 0.49 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -36.49 366.36 -8.96 -45.45 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.70 Total: 4.39 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -0.95 Total: -4.51 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.18 Total: -41.88 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.17 Total: -19.24 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Atomic # 16 Polarization: -2.36 SS G_CDS: -4.47 Total: -6.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.49 -8.96 -45.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285906814.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.039 kcal (2) G-P(sol) polarization free energy of solvation -36.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds