Wall clock time and date at job start Sat Apr 11 2020 05:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86797 * 119.99931 * 2 1 4 4 H 1.48505 * 109.47023 * 269.99835 * 3 2 1 5 5 H 1.48501 * 109.47039 * 29.99689 * 3 2 1 6 6 H 1.48500 * 109.47703 * 149.99722 * 3 2 1 7 7 C 1.38800 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00219 * 359.97438 * 7 2 1 9 9 S 1.76203 * 120.00111 * 180.02562 * 7 2 1 10 10 C 1.81003 * 99.99947 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46941 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99871 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00073 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99983 * 185.29914 * 13 11 10 15 15 C 1.53001 * 115.54983 * 301.55781 * 14 13 11 16 16 N 1.46502 * 109.47446 * 273.92070 * 15 14 13 17 17 C 1.34769 * 120.00333 * 184.91464 * 16 15 14 18 18 O 1.21639 * 120.00116 * 4.95501 * 17 16 15 19 19 C 1.47192 * 120.00331 * 184.95257 * 17 16 15 20 20 C 1.44425 * 123.46215 * 174.76840 * 19 17 16 21 21 C 1.32774 * 113.08209 * 179.97438 * 20 19 17 22 22 S 1.75507 * 110.57524 * 359.74275 * 21 20 19 23 23 C 1.36008 * 123.45713 * 354.75971 * 19 17 16 24 24 C 1.52995 * 117.50035 * 87.23131 * 14 13 11 25 25 C 1.53003 * 117.49935 * 155.89002 * 14 13 11 26 26 H 0.96993 * 120.00200 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47016 * 60.00094 * 10 9 7 28 28 H 1.08999 * 109.46728 * 299.99622 * 10 9 7 29 29 H 0.97000 * 119.99440 * 5.29333 * 13 11 10 30 30 H 1.09002 * 109.47225 * 153.91979 * 15 14 13 31 31 H 1.08997 * 109.47010 * 33.91962 * 15 14 13 32 32 H 0.97002 * 119.99818 * 4.90963 * 16 15 14 33 33 H 1.07994 * 123.45787 * 359.97438 * 20 19 17 34 34 H 1.07997 * 124.71555 * 179.97438 * 21 20 19 35 35 H 1.08004 * 124.59400 * 0.02562 * 23 19 17 36 36 H 1.09005 * 117.49583 * 215.00173 * 24 14 13 37 37 H 1.08999 * 117.50258 * 0.02562 * 24 14 13 38 38 H 1.08996 * 117.49489 * 359.97438 * 25 14 13 39 39 H 1.08997 * 117.49848 * 144.96594 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0014 9 16 3.7724 -1.2020 0.0012 10 6 4.0867 -2.9845 0.0009 11 6 5.5732 -3.2324 0.0008 12 8 6.3442 -2.2961 0.0005 13 7 6.0459 -4.4945 0.0011 14 6 7.4858 -4.7374 0.1182 15 6 8.3534 -4.0969 -0.9672 16 7 8.4246 -4.9904 -2.1260 17 6 9.2177 -4.6783 -3.1699 18 8 9.9423 -3.7030 -3.1130 19 6 9.2072 -5.5176 -4.3791 20 6 9.9417 -5.1938 -5.5797 21 6 9.7859 -6.0932 -6.5438 22 16 8.7288 -7.3897 -6.0128 23 6 8.5050 -6.6780 -4.4803 24 6 8.0738 -4.8334 1.5274 25 6 7.9311 -6.0933 0.6699 26 1 -0.4850 0.8400 -0.0004 27 1 3.6441 -3.4313 -0.8893 28 1 3.6435 -3.4317 0.8907 29 1 5.4326 -5.2421 -0.0761 30 1 9.3570 -3.9273 -0.5771 31 1 7.9150 -3.1456 -1.2684 32 1 7.9008 -5.8068 -2.1419 33 1 10.5547 -4.3106 -5.6826 34 1 10.2486 -6.0370 -7.5180 35 1 7.8923 -7.0945 -3.6944 36 1 9.0788 -4.4402 1.6812 37 1 7.3893 -4.7163 2.3675 38 1 7.1526 -6.8044 0.9461 39 1 8.8418 -6.5292 0.2592 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285906814.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:04 Heat of formation + Delta-G solvation = -38.953288 kcal Electronic energy + Delta-G solvation = -23654.717056 eV Core-core repulsion = 20008.072115 eV Total energy + Delta-G solvation = -3646.644942 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -41.41602 -40.62363 -38.60723 -37.72552 -35.38872 -34.68911 -34.04269 -31.11866 -30.62446 -28.21543 -27.85191 -25.68340 -23.72171 -22.81911 -22.24959 -21.07832 -20.17033 -19.91736 -19.11676 -18.11027 -17.90853 -17.59093 -17.11639 -16.70879 -16.39084 -16.33516 -15.90522 -15.63776 -15.24448 -15.00014 -14.80536 -14.32051 -14.22989 -13.97577 -13.82185 -13.57628 -13.45474 -13.36238 -13.32996 -13.04057 -12.66057 -12.46139 -12.15009 -11.99435 -11.88824 -11.57656 -11.18951 -11.12517 -10.87392 -10.53807 -10.25148 -10.07888 -9.99292 -9.35150 -9.00894 -8.53330 -6.23538 -0.22729 0.62390 0.94384 0.96249 0.97166 1.29449 1.44514 1.52174 1.53264 1.96089 2.08765 2.23206 2.29923 2.69473 2.79842 2.85160 3.43449 3.72381 3.77747 3.84171 3.89879 3.99637 4.22701 4.29629 4.41946 4.43224 4.48273 4.57181 4.71577 4.81234 4.83956 4.96929 5.12429 5.16686 5.23686 5.28580 5.48097 5.69393 6.10002 6.43121 6.46778 6.92420 7.12770 7.19986 8.59006 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.012667 B = 0.002501 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.852862 B =11192.458561 C =12163.726792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.258 1.258 6 H -0.238 1.238 7 C -0.526 4.526 8 H 0.064 0.936 9 S -0.180 6.180 10 C -0.109 4.109 11 C 0.537 3.463 12 O -0.552 6.552 13 N -0.680 5.680 14 C 0.065 3.935 15 C 0.154 3.846 16 N -0.703 5.703 17 C 0.570 3.430 18 O -0.588 6.588 19 C -0.186 4.186 20 C -0.116 4.116 21 C -0.235 4.235 22 S 0.249 5.751 23 C -0.204 4.204 24 C -0.173 4.173 25 C -0.123 4.123 26 H 0.277 0.723 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.421 0.579 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.414 0.586 33 H 0.138 0.862 34 H 0.192 0.808 35 H 0.198 0.802 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.132 0.868 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.323 -24.584 -7.656 32.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.190 1.190 5 H -0.183 1.183 6 H -0.162 1.162 7 C -0.674 4.674 8 H 0.083 0.917 9 S 0.047 5.953 10 C -0.260 4.260 11 C 0.323 3.677 12 O -0.429 6.429 13 N -0.334 5.334 14 C -0.023 4.023 15 C 0.030 3.970 16 N -0.355 5.355 17 C 0.357 3.643 18 O -0.470 6.470 19 C -0.204 4.204 20 C -0.145 4.145 21 C -0.370 4.370 22 S 0.515 5.485 23 C -0.343 4.343 24 C -0.212 4.212 25 C -0.160 4.160 26 H 0.086 0.914 27 H 0.131 0.869 28 H 0.135 0.865 29 H 0.260 0.740 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.252 0.748 33 H 0.156 0.844 34 H 0.210 0.790 35 H 0.215 0.785 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.150 0.850 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 20.360 -23.572 -8.280 32.230 hybrid contribution -1.173 1.022 0.753 1.728 sum 19.188 -22.550 -7.528 30.550 Atomic orbital electron populations 1.70004 1.07202 1.28993 1.49211 1.25523 0.95247 1.02119 0.92997 0.85908 0.80715 0.79893 0.80108 1.18950 1.18269 1.16186 1.22450 0.90166 0.96687 1.58079 0.91729 1.84826 1.06517 1.06388 1.97580 1.23260 0.95754 0.99483 1.07518 1.20017 0.89314 0.83389 0.75019 1.90707 1.59106 1.43884 1.49179 1.45012 1.06425 1.06937 1.75009 1.20694 0.80990 1.04670 0.95967 1.20863 0.98814 0.92647 0.84711 1.45641 1.46162 1.26308 1.17404 1.18104 0.79147 0.83886 0.83127 1.90782 1.42773 1.30738 1.82722 1.20188 1.06042 0.98325 0.95851 1.21183 1.00594 1.01126 0.91567 1.25862 1.06781 0.99490 1.04849 1.82941 1.41347 1.21666 1.02574 1.26058 1.03578 0.98951 1.05683 1.23502 1.02855 1.02006 0.92818 1.23515 1.04388 0.88853 0.99286 0.91363 0.86895 0.86547 0.73980 0.90763 0.93198 0.74826 0.84408 0.79046 0.78543 0.87733 0.88061 0.85022 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.75 13.97 21.65 0.30 -55.45 16 2 C 0.05 2.74 5.50 84.86 0.47 3.21 16 3 Si 0.91 45.51 27.74 68.60 1.90 47.41 16 4 H -0.26 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.24 -11.91 6.74 99.48 0.67 -11.24 16 7 C -0.53 -30.47 10.04 67.95 0.68 -29.79 16 8 H 0.06 3.91 8.03 -2.91 -0.02 3.89 16 9 S -0.18 -9.06 18.55 -56.49 -1.05 -10.11 16 10 C -0.11 -3.95 6.16 71.24 0.44 -3.51 16 11 C 0.54 17.59 7.66 87.66 0.67 18.26 16 12 O -0.55 -23.24 14.09 -3.06 -0.04 -23.28 16 13 N -0.68 -14.00 5.48 -422.93 -2.32 -16.32 16 14 C 0.06 1.20 1.96 3.60 0.01 1.20 16 15 C 0.15 3.86 5.60 86.38 0.48 4.34 16 16 N -0.70 -14.08 5.41 -466.59 -2.52 -16.61 16 17 C 0.57 14.95 7.78 86.60 0.67 15.63 16 18 O -0.59 -21.30 16.78 -4.15 -0.07 -21.37 16 19 C -0.19 -3.69 5.98 -19.87 -0.12 -3.81 16 20 C -0.12 -2.23 10.11 22.67 0.23 -2.00 16 21 C -0.23 -2.91 11.12 66.64 0.74 -2.17 16 22 S 0.25 2.15 23.02 -56.49 -1.30 0.85 16 23 C -0.20 -2.39 10.38 67.30 0.70 -1.69 16 24 C -0.17 -2.79 10.11 30.62 0.31 -2.48 16 25 C -0.12 -1.11 9.93 30.62 0.30 -0.80 16 26 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 27 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 28 H 0.12 3.80 8.14 -2.40 -0.02 3.78 16 29 H 0.42 5.41 8.83 -92.71 -0.82 4.59 16 30 H 0.07 1.93 7.86 -2.39 -0.02 1.91 16 31 H 0.05 1.76 6.24 -2.39 -0.01 1.74 16 32 H 0.41 4.98 6.88 -92.71 -0.64 4.34 16 33 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 34 H 0.19 1.36 8.06 -2.91 -0.02 1.33 16 35 H 0.20 0.97 7.03 -2.91 -0.02 0.95 16 36 H 0.10 1.69 8.05 -2.38 -0.02 1.67 16 37 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -84.80 366.36 0.11 -84.70 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -0.38 Total: 13.80 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 5.59 Total: -3.62 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -4.54 Total: -88.37 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -0.11 Total: -44.66 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.90 Total: 47.41 kcal Atomic # 16 Polarization: -6.91 SS G_CDS: -2.35 Total: -9.26 kcal Total: -84.80 0.11 -84.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285906814.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.746 kcal (2) G-P(sol) polarization free energy of solvation -84.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds