Wall clock time and date at job start Sat Apr 11 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37473 * 123.35164 * 2 1 4 4 C 1.33809 * 115.10464 * 179.97438 * 3 2 1 5 5 S 1.70618 * 110.95275 * 359.72575 * 4 3 2 6 6 C 1.36646 * 123.35224 * 179.97438 * 2 1 3 7 7 C 1.46577 * 125.45957 * 0.02562 * 6 2 1 8 8 O 1.21701 * 119.99944 * 359.97438 * 7 6 2 9 9 N 1.34780 * 120.00300 * 179.97438 * 7 6 2 10 10 C 1.46497 * 120.00114 * 180.02562 * 9 7 6 11 11 C 1.53501 * 114.20643 * 155.00293 * 10 9 7 12 12 N 1.47065 * 87.98741 * 87.51773 * 11 10 9 13 13 C 1.34775 * 136.05752 * 207.08848 * 12 11 10 14 14 O 1.21276 * 119.99984 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00022 * 180.02562 * 13 12 11 16 16 S 1.80998 * 109.47116 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00013 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00250 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00102 * 179.72368 * 17 16 15 20 20 N 1.31626 * 120.00155 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00292 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47210 * 89.99890 * 21 19 17 23 23 H 1.48504 * 109.47424 * 210.00121 * 21 19 17 24 24 H 1.48502 * 109.46888 * 330.00210 * 21 19 17 25 25 C 1.47067 * 87.88381 * 27.34024 * 12 11 10 26 26 H 1.09007 * 109.47062 * 270.01922 * 1 2 3 27 27 H 1.08998 * 109.47587 * 30.02000 * 1 2 3 28 28 H 1.09000 * 109.46988 * 150.02807 * 1 2 3 29 29 H 1.08002 * 122.44408 * 359.95818 * 3 2 1 30 30 H 1.08002 * 124.52597 * 179.97438 * 4 3 2 31 31 H 0.97005 * 119.99797 * 0.02562 * 9 7 6 32 32 H 1.08999 * 113.28436 * 21.93088 * 10 9 7 33 33 H 1.09001 * 113.46643 * 332.73474 * 11 10 9 34 34 H 1.08996 * 113.46488 * 202.29934 * 11 10 9 35 35 H 1.09001 * 109.47434 * 59.99478 * 15 13 12 36 36 H 1.08999 * 109.47072 * 299.99957 * 15 13 12 37 37 H 0.97004 * 120.00604 * 179.97438 * 20 19 17 38 38 H 1.09010 * 113.46411 * 87.43777 * 25 12 11 39 39 H 1.08997 * 113.47100 * 217.87349 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5870 0.9564 0.0005 5 16 3.9623 -0.7080 0.0087 6 6 2.2582 -1.1414 0.0005 7 6 1.7284 -2.5081 0.0006 8 8 0.5258 -2.6945 0.0006 9 7 2.5731 -3.5584 0.0006 10 6 2.0436 -4.9243 0.0001 11 6 2.9994 -5.9696 -0.5915 12 7 3.5884 -6.1135 0.7484 13 6 4.7880 -6.4711 1.2478 14 8 5.6915 -6.7737 0.4974 15 6 5.0065 -6.4962 2.7386 16 16 6.7048 -7.0135 3.0909 17 6 6.6832 -6.9556 4.8519 18 1 5.7834 -6.6613 5.3715 19 6 7.8208 -7.2941 5.5714 20 7 8.9160 -7.6579 4.9383 21 14 7.7982 -7.2319 7.4382 22 1 7.3703 -8.5499 7.9722 23 1 9.1593 -6.9130 7.9395 24 1 6.8471 -6.1835 7.8871 25 6 2.2904 -5.7015 1.3036 26 1 -0.3633 0.0003 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3633 -0.8902 -0.5134 29 1 1.8200 2.1334 -0.0007 30 1 4.3204 1.7492 0.0002 31 1 3.5317 -3.4098 0.0009 32 1 1.0220 -4.9902 -0.3742 33 1 3.6903 -5.5587 -1.3276 34 1 2.4947 -6.8696 -0.9427 35 1 4.3105 -7.1995 3.1961 36 1 4.8375 -5.5000 3.1474 37 1 9.7112 -7.8941 5.4411 38 1 1.5988 -6.5309 1.4520 39 1 2.3773 -5.0622 2.1821 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001296993653.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:19 Heat of formation + Delta-G solvation = 3.930232 kcal Electronic energy + Delta-G solvation = -23666.508500 eV Core-core repulsion = 20021.723127 eV Total energy + Delta-G solvation = -3644.785373 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.89992 -39.63512 -38.15357 -37.40135 -33.97921 -32.45734 -31.28149 -30.50664 -28.78173 -27.50538 -26.13108 -25.47099 -24.04227 -22.67436 -21.24296 -19.42185 -19.04627 -18.48111 -17.73695 -16.70873 -16.59683 -16.12781 -15.66043 -15.41403 -15.21016 -15.13417 -14.82660 -14.12477 -13.99847 -13.83801 -13.72225 -13.33622 -13.04095 -12.88139 -12.67338 -12.61304 -12.42100 -12.14886 -12.07880 -11.93587 -11.26494 -11.18939 -11.07965 -11.04064 -10.78436 -10.23445 -9.85239 -9.58384 -9.41016 -9.11967 -9.09283 -8.77529 -8.71329 -8.27971 -6.54052 -6.24379 -3.95526 0.16805 1.15517 1.55293 2.01870 2.67197 2.69217 2.84177 3.00652 3.20678 3.22885 3.28295 3.52660 4.05582 4.17651 4.43860 4.52138 4.53697 4.85345 4.86426 4.95378 5.00598 5.11010 5.21870 5.23186 5.36730 5.39354 5.44028 5.46664 5.52397 5.59356 5.68828 5.84313 5.91240 5.99316 6.10619 6.10832 6.20530 7.08846 7.57119 7.76212 7.81172 8.32641 8.46731 9.20991 10.83047 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.012804 B = 0.002615 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.208377 B =10706.306971 C =11747.956283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.016 4.016 3 C -0.152 4.152 4 C -0.223 4.223 5 S 0.208 5.792 6 C -0.283 4.283 7 C 0.600 3.400 8 O -0.525 6.525 9 N -0.706 5.706 10 C 0.108 3.892 11 C 0.097 3.903 12 N -0.655 5.655 13 C 0.562 3.438 14 O -0.512 6.512 15 C -0.145 4.145 16 S -0.059 6.059 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.087 3.913 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.145 0.855 30 H 0.170 0.830 31 H 0.404 0.596 32 H 0.129 0.871 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.269 0.731 38 H 0.098 0.902 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.230 15.869 -11.941 26.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.032 4.032 3 C -0.184 4.184 4 C -0.361 4.361 5 S 0.477 5.523 6 C -0.403 4.403 7 C 0.388 3.612 8 O -0.404 6.404 9 N -0.356 5.356 10 C 0.001 3.999 11 C -0.027 4.027 12 N -0.395 5.395 13 C 0.352 3.648 14 O -0.386 6.386 15 C -0.295 4.295 16 S 0.167 5.833 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.038 4.038 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.163 0.837 30 H 0.188 0.812 31 H 0.239 0.761 32 H 0.147 0.853 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.895 14.327 -12.935 24.382 hybrid contribution -1.662 1.385 2.213 3.095 sum -16.558 15.712 -10.722 25.219 Atomic orbital electron populations 1.20749 0.88620 1.03903 1.03152 1.19536 0.97893 0.90329 0.95447 1.19940 0.92549 0.99746 1.06149 1.25334 1.00771 1.02011 1.07971 1.83349 1.03408 0.98216 1.67346 1.24339 0.97645 0.97092 1.21260 1.16862 0.85975 0.82745 0.75633 1.90776 1.14170 1.85257 1.50163 1.45439 1.09996 1.04830 1.75367 1.22281 0.99380 0.80822 0.97376 1.23283 0.94012 0.97476 0.87925 1.49798 1.10171 1.70394 1.09091 1.19967 0.79624 0.74867 0.90365 1.90723 1.40945 1.46499 1.60433 1.23475 1.07802 1.05168 0.93098 1.85387 1.03025 1.87803 1.07069 1.22850 1.01110 1.53328 0.91051 0.90932 1.24990 0.94548 0.94470 0.99535 1.70013 1.01900 1.42306 1.36056 0.86164 0.77646 0.78606 0.83074 1.20242 1.20715 1.19664 1.23558 0.84272 0.97721 0.98237 0.90569 0.91644 0.88844 0.83695 0.81217 0.76117 0.85330 0.89935 0.88321 0.89282 0.89367 0.92147 0.88429 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.55 36.00 0.34 -0.54 16 2 C -0.02 -0.16 5.90 -105.48 -0.62 -0.78 16 3 C -0.15 -1.19 9.97 -41.41 -0.41 -1.60 16 4 C -0.22 -1.66 10.92 29.18 0.32 -1.34 16 5 S 0.21 1.80 22.16 -107.50 -2.38 -0.58 16 6 C -0.28 -2.91 6.45 -36.80 -0.24 -3.14 16 7 C 0.60 6.73 7.78 -12.90 -0.10 6.63 16 8 O -0.53 -6.84 13.83 5.19 0.07 -6.77 16 9 N -0.71 -7.09 5.39 -54.82 -0.30 -7.38 16 10 C 0.11 0.97 4.62 -67.67 -0.31 0.66 16 11 C 0.10 0.97 8.38 -8.51 -0.07 0.89 16 12 N -0.65 -8.88 3.69 -185.08 -0.68 -9.57 16 13 C 0.56 10.63 8.10 -10.99 -0.09 10.54 16 14 O -0.51 -11.70 16.64 5.56 0.09 -11.61 16 15 C -0.15 -2.97 5.98 36.00 0.22 -2.75 16 16 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 17 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 21 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 25 C 0.09 0.87 8.25 -8.38 -0.07 0.80 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.09 0.93 6.01 -51.93 -0.31 0.62 16 29 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 30 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.40 4.05 7.88 -40.82 -0.32 3.73 16 32 H 0.13 1.02 7.45 -51.93 -0.39 0.64 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 36 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -35.76 365.97 -9.81 -45.57 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.79 Total: 1.18 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -0.84 Total: -3.54 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: -0.24 Total: -42.27 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.16 Total: -18.37 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -4.59 Total: -4.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.76 -9.81 -45.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001296993653.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.504 kcal (2) G-P(sol) polarization free energy of solvation -35.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds