Wall clock time and date at job start Sat Apr 11 2020 05:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 120.00319 * 2 1 4 4 H 1.48499 * 109.47215 * 239.99976 * 3 2 1 5 5 H 1.48497 * 109.46841 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46904 * 119.99917 * 3 2 1 7 7 C 1.38802 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00300 * 180.02562 * 7 2 1 9 9 S 1.76210 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00204 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47072 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99997 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99927 * 179.97438 * 11 10 9 14 14 C 1.47579 * 134.49245 * 180.02562 * 13 11 10 15 15 C 1.53951 * 86.11561 * 155.35563 * 14 13 11 16 16 C 1.52998 * 113.73874 * 137.95008 * 15 14 13 17 17 N 1.46494 * 109.47322 * 176.92335 * 16 15 14 18 18 C 1.34777 * 120.00241 * 179.97438 * 17 16 15 19 19 O 1.21702 * 120.00111 * 0.02562 * 18 17 16 20 20 C 1.46584 * 119.99934 * 180.02562 * 18 17 16 21 21 C 1.36652 * 125.45815 * 180.02562 * 20 18 17 22 22 C 1.37475 * 113.29531 * 179.97438 * 21 20 18 23 23 C 1.33814 * 115.10326 * 0.02562 * 22 21 20 24 24 S 1.70613 * 110.95401 * 359.97438 * 23 22 21 25 25 C 1.47811 * 134.45675 * 359.86978 * 13 11 10 26 26 H 0.97003 * 119.99630 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46818 * 59.99565 * 10 9 7 28 28 H 1.08997 * 109.47018 * 300.00223 * 10 9 7 29 29 H 1.09007 * 113.76903 * 41.05899 * 14 13 11 30 30 H 1.09000 * 113.77218 * 269.65937 * 14 13 11 31 31 H 1.08995 * 113.74609 * 269.15422 * 15 14 13 32 32 H 1.09006 * 109.47103 * 56.92681 * 16 15 14 33 33 H 1.08995 * 109.47803 * 296.93100 * 16 15 14 34 34 H 0.97008 * 119.99920 * 0.02562 * 17 16 15 35 35 H 1.07998 * 123.35183 * 0.25097 * 21 20 18 36 36 H 1.07999 * 122.44590 * 180.02562 * 22 21 20 37 37 H 1.07998 * 124.52149 * 179.97438 * 23 22 21 38 38 H 1.08996 * 113.77417 * 90.37949 * 25 13 11 39 39 H 1.09011 * 113.83419 * 318.91431 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1292 -2.7281 -0.0005 10 6 2.5157 -3.8916 -0.0005 11 6 1.9872 -5.3028 0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8439 -6.3432 -0.0003 14 6 2.6887 -7.8108 -0.0004 15 6 4.0877 -7.8539 -0.6414 16 6 4.9913 -8.9509 -0.0748 17 7 6.2657 -8.9555 -0.7973 18 6 7.2242 -9.8437 -0.4674 19 8 7.0309 -10.6422 0.4305 20 6 8.4996 -9.8479 -1.1900 21 6 9.5441 -10.6956 -0.9497 22 6 10.6208 -10.4798 -1.7767 23 6 10.4659 -9.4900 -2.6638 24 16 8.9304 -8.7632 -2.5051 25 6 4.3164 -6.4717 -0.0037 26 1 -0.4850 0.8401 -0.0004 27 1 3.1244 -3.7314 0.8894 28 1 3.1243 -3.7315 -0.8905 29 1 1.8942 -8.1685 -0.6554 30 1 2.6487 -8.2485 0.9971 31 1 4.0720 -7.8370 -1.7311 32 1 4.5041 -9.9191 -0.1914 33 1 5.1739 -8.7612 0.9828 34 1 6.4199 -8.3188 -1.5127 35 1 9.5239 -11.4619 -0.1889 36 1 11.5256 -11.0663 -1.7150 37 1 11.2130 -9.1911 -3.3841 38 1 4.7561 -6.5149 0.9927 39 1 4.8190 -5.7624 -0.6614 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297161043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:28 Heat of formation + Delta-G solvation = -0.923746 kcal Electronic energy + Delta-G solvation = -22862.526686 eV Core-core repulsion = 19217.530829 eV Total energy + Delta-G solvation = -3644.995857 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.57615 -39.82778 -38.02435 -37.53932 -35.01480 -32.44913 -31.38021 -30.31016 -28.85610 -26.46681 -26.21023 -25.46403 -24.73506 -21.77910 -21.30749 -19.74402 -19.13569 -18.91120 -17.71542 -16.89215 -16.67990 -16.24033 -16.03526 -15.82674 -15.33818 -15.08432 -14.82195 -14.45029 -14.07734 -13.80267 -13.69220 -13.28551 -13.17942 -13.10110 -12.90563 -12.75501 -12.50900 -12.21208 -11.93367 -11.63990 -11.49021 -11.14508 -11.05742 -11.05392 -10.78854 -10.50161 -9.85106 -9.64899 -9.41141 -9.32288 -9.10883 -9.07918 -8.64942 -8.26635 -6.52850 -6.23311 -3.94519 0.00877 0.95628 1.35913 1.91177 2.59963 2.70981 2.78558 3.03106 3.21729 3.22195 3.27328 3.51991 3.96403 4.18337 4.29112 4.41836 4.50126 4.57262 4.74915 4.80055 4.93815 4.97350 5.11634 5.21649 5.24322 5.29747 5.35443 5.45494 5.46760 5.55678 5.66352 5.77830 5.80965 5.86557 5.95562 5.99275 6.11124 6.95340 7.57181 7.69627 7.76871 8.33020 8.50917 9.21603 10.84043 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.001950 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.770056 B =14357.874176 C =15863.104928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.145 4.145 11 C 0.556 3.444 12 O -0.514 6.514 13 N -0.652 5.652 14 C 0.121 3.879 15 C -0.140 4.140 16 C 0.130 3.870 17 N -0.725 5.725 18 C 0.592 3.408 19 O -0.528 6.528 20 C -0.270 4.270 21 C -0.054 4.054 22 C -0.151 4.151 23 C -0.228 4.228 24 S 0.204 5.796 25 C 0.107 3.893 26 H 0.269 0.731 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.400 0.600 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.170 0.830 38 H 0.087 0.913 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.258 -21.623 -5.674 31.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.296 4.296 11 C 0.345 3.655 12 O -0.388 6.388 13 N -0.391 5.391 14 C -0.003 4.003 15 C -0.159 4.159 16 C 0.006 3.994 17 N -0.377 5.377 18 C 0.378 3.622 19 O -0.406 6.406 20 C -0.391 4.391 21 C -0.088 4.088 22 C -0.182 4.182 23 C -0.366 4.366 24 S 0.471 5.529 25 C -0.017 4.017 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.234 0.766 35 H 0.172 0.828 36 H 0.164 0.836 37 H 0.188 0.812 38 H 0.105 0.895 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 19.235 -20.977 -5.777 29.041 hybrid contribution 3.061 0.472 0.324 3.114 sum 22.296 -20.505 -5.453 30.778 Atomic orbital electron populations 1.70009 1.05951 1.27598 1.46665 1.24998 0.95044 0.99033 0.94509 0.86215 0.79234 0.81200 0.78796 1.19928 1.20786 1.19931 1.22811 0.94841 0.91582 1.59188 0.90986 1.85416 1.04889 0.96337 1.96726 1.23471 1.06501 0.94810 1.04777 1.20052 0.85496 0.85211 0.74694 1.90719 1.14867 1.84983 1.48199 1.50021 1.07276 1.05775 1.76045 1.22983 0.95591 0.80961 1.00768 1.23487 0.96015 0.94587 1.01855 1.21397 0.82251 0.99207 0.96515 1.45849 1.16075 1.36773 1.38994 1.16925 0.82041 0.80739 0.82519 1.90854 1.80071 1.39152 1.30496 1.24654 1.00635 1.06962 1.06799 1.20838 0.90789 0.98172 0.98977 1.20086 1.00792 1.00166 0.97176 1.25371 1.02851 1.02604 1.05729 1.83092 1.08092 1.32954 1.28749 1.23319 0.82291 0.95145 1.00914 0.92096 0.89359 0.89357 0.89610 0.89592 0.87167 0.90269 0.90312 0.76572 0.82822 0.83590 0.81249 0.89465 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.11 13.22 55.49 0.73 -25.37 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -2.97 5.91 36.00 0.21 -2.76 16 11 C 0.56 10.70 8.07 -10.99 -0.09 10.62 16 12 O -0.51 -12.05 16.59 5.56 0.09 -11.96 16 13 N -0.65 -8.89 3.61 -178.16 -0.64 -9.53 16 14 C 0.12 1.19 8.41 -2.96 -0.02 1.17 16 15 C -0.14 -0.98 3.93 -89.70 -0.35 -1.33 16 16 C 0.13 0.89 5.51 -4.05 -0.02 0.87 16 17 N -0.73 -5.04 5.55 -61.65 -0.34 -5.38 16 18 C 0.59 5.59 7.78 -12.89 -0.10 5.49 16 19 O -0.53 -6.84 16.84 5.19 0.09 -6.75 16 20 C -0.27 -2.10 6.45 -36.79 -0.24 -2.34 16 21 C -0.05 -0.39 10.01 -40.43 -0.40 -0.80 16 22 C -0.15 -0.82 10.15 -41.41 -0.42 -1.24 16 23 C -0.23 -1.10 10.92 29.18 0.32 -0.78 16 24 S 0.20 1.07 22.16 -107.50 -2.38 -1.32 16 25 C 0.11 0.95 8.18 -2.85 -0.02 0.93 16 26 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 28 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 29 H 0.09 0.88 8.14 -51.92 -0.42 0.45 16 30 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.58 7.88 -51.93 -0.41 0.17 16 34 H 0.40 1.99 7.59 -40.82 -0.31 1.68 16 35 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.17 0.44 8.06 -52.49 -0.42 0.02 16 38 H 0.09 0.69 7.92 -51.93 -0.41 0.28 16 39 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -37.55 370.36 -9.95 -47.51 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -4.90 Total: -2.05 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -0.95 Total: -3.13 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: -0.25 Total: -40.29 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.18 Total: -18.71 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -0.58 SS G_CDS: -4.59 Total: -5.18 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.55 -9.95 -47.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297161043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.583 kcal (2) G-P(sol) polarization free energy of solvation -37.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds