Wall clock time and date at job start Sat Apr 11 2020 05:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 120.00319 * 2 1 4 4 H 1.48499 * 109.47215 * 239.99976 * 3 2 1 5 5 H 1.48497 * 109.46841 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46904 * 119.99917 * 3 2 1 7 7 C 1.38802 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00300 * 180.02562 * 7 2 1 9 9 S 1.76210 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00204 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47072 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99997 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99927 * 179.97438 * 11 10 9 14 14 C 1.47579 * 134.49245 * 180.02562 * 13 11 10 15 15 C 1.53951 * 86.11561 * 155.35563 * 14 13 11 16 16 C 1.52998 * 113.73874 * 137.95008 * 15 14 13 17 17 N 1.46494 * 109.47322 * 176.92335 * 16 15 14 18 18 C 1.34777 * 120.00241 * 179.97438 * 17 16 15 19 19 O 1.21702 * 120.00111 * 0.02562 * 18 17 16 20 20 C 1.46584 * 119.99934 * 180.02562 * 18 17 16 21 21 C 1.36652 * 125.45815 * 180.02562 * 20 18 17 22 22 C 1.37475 * 113.29531 * 179.97438 * 21 20 18 23 23 C 1.33814 * 115.10326 * 0.02562 * 22 21 20 24 24 S 1.70613 * 110.95401 * 359.97438 * 23 22 21 25 25 C 1.47811 * 134.45675 * 359.86978 * 13 11 10 26 26 H 0.97003 * 119.99630 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46818 * 59.99565 * 10 9 7 28 28 H 1.08997 * 109.47018 * 300.00223 * 10 9 7 29 29 H 1.09007 * 113.76903 * 41.05899 * 14 13 11 30 30 H 1.09000 * 113.77218 * 269.65937 * 14 13 11 31 31 H 1.08995 * 113.74609 * 269.15422 * 15 14 13 32 32 H 1.09006 * 109.47103 * 56.92681 * 16 15 14 33 33 H 1.08995 * 109.47803 * 296.93100 * 16 15 14 34 34 H 0.97008 * 119.99920 * 0.02562 * 17 16 15 35 35 H 1.07998 * 123.35183 * 0.25097 * 21 20 18 36 36 H 1.07999 * 122.44590 * 180.02562 * 22 21 20 37 37 H 1.07998 * 124.52149 * 179.97438 * 23 22 21 38 38 H 1.08996 * 113.77417 * 90.37949 * 25 13 11 39 39 H 1.09011 * 113.83419 * 318.91431 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1292 -2.7281 -0.0005 10 6 2.5157 -3.8916 -0.0005 11 6 1.9872 -5.3028 0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8439 -6.3432 -0.0003 14 6 2.6887 -7.8108 -0.0004 15 6 4.0877 -7.8539 -0.6414 16 6 4.9913 -8.9509 -0.0748 17 7 6.2657 -8.9555 -0.7973 18 6 7.2242 -9.8437 -0.4674 19 8 7.0309 -10.6422 0.4305 20 6 8.4996 -9.8479 -1.1900 21 6 9.5441 -10.6956 -0.9497 22 6 10.6208 -10.4798 -1.7767 23 6 10.4659 -9.4900 -2.6638 24 16 8.9304 -8.7632 -2.5051 25 6 4.3164 -6.4717 -0.0037 26 1 -0.4850 0.8401 -0.0004 27 1 3.1244 -3.7314 0.8894 28 1 3.1243 -3.7315 -0.8905 29 1 1.8942 -8.1685 -0.6554 30 1 2.6487 -8.2485 0.9971 31 1 4.0720 -7.8370 -1.7311 32 1 4.5041 -9.9191 -0.1914 33 1 5.1739 -8.7612 0.9828 34 1 6.4199 -8.3188 -1.5127 35 1 9.5239 -11.4619 -0.1889 36 1 11.5256 -11.0663 -1.7150 37 1 11.2130 -9.1911 -3.3841 38 1 4.7561 -6.5149 0.9927 39 1 4.8190 -5.7624 -0.6614 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297161043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:27 Heat of formation + Delta-G solvation = -27.745600 kcal Electronic energy + Delta-G solvation = -22863.689769 eV Core-core repulsion = 19217.530829 eV Total energy + Delta-G solvation = -3646.158940 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.48152 -40.65997 -39.00642 -38.34051 -35.77974 -34.59437 -32.45162 -31.15559 -29.90440 -27.73901 -27.25181 -26.93180 -25.34504 -22.38857 -22.11093 -20.46455 -20.20905 -19.52928 -19.45827 -18.01325 -17.53754 -17.03409 -16.88609 -16.78092 -16.68333 -16.44089 -16.02048 -15.78430 -15.23787 -14.68940 -14.62447 -14.48291 -14.05263 -13.81287 -13.68585 -13.65472 -13.46228 -13.24612 -13.17065 -12.95957 -12.86699 -12.62603 -12.39092 -11.94084 -11.89037 -11.76172 -11.25629 -11.13496 -10.89203 -10.30340 -10.28527 -9.80230 -9.77415 -9.49649 -8.69487 -8.35120 -6.14422 -0.47654 0.52160 0.94608 1.20665 1.42765 1.43131 1.44045 1.53352 1.56458 1.94383 2.04969 2.16933 2.26902 2.98836 3.18599 3.25930 3.59685 3.72432 3.83541 4.05995 4.14288 4.17924 4.25207 4.38586 4.42997 4.47598 4.55577 4.57031 4.60089 4.73999 4.78411 4.90018 5.04991 5.17483 5.25037 5.32738 5.37914 5.40425 6.18741 6.37548 6.55760 7.05588 7.06560 7.09629 8.73887 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.001950 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.770056 B =14357.874176 C =15863.104928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.118 4.118 11 C 0.552 3.448 12 O -0.571 6.571 13 N -0.651 5.651 14 C 0.112 3.888 15 C -0.109 4.109 16 C 0.135 3.865 17 N -0.714 5.714 18 C 0.589 3.411 19 O -0.573 6.573 20 C -0.303 4.303 21 C -0.063 4.063 22 C -0.162 4.162 23 C -0.223 4.223 24 S 0.240 5.760 25 C 0.101 3.899 26 H 0.271 0.729 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.411 0.589 35 H 0.146 0.854 36 H 0.165 0.835 37 H 0.196 0.804 38 H 0.104 0.896 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.707 -21.422 -6.795 34.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.270 4.270 11 C 0.341 3.659 12 O -0.450 6.450 13 N -0.387 5.387 14 C -0.011 4.011 15 C -0.129 4.129 16 C 0.012 3.988 17 N -0.365 5.365 18 C 0.377 3.623 19 O -0.455 6.455 20 C -0.423 4.423 21 C -0.097 4.097 22 C -0.192 4.192 23 C -0.361 4.361 24 S 0.507 5.493 25 C -0.020 4.020 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.144 0.856 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.248 0.752 35 H 0.164 0.836 36 H 0.182 0.818 37 H 0.213 0.787 38 H 0.122 0.878 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 22.745 -20.801 -6.925 31.591 hybrid contribution 2.108 0.253 0.637 2.217 sum 24.853 -20.548 -6.288 32.854 Atomic orbital electron populations 1.70183 1.08014 1.28712 1.47836 1.26164 0.95997 1.03400 0.93680 0.84982 0.77788 0.75528 0.79562 1.18449 1.20433 1.18670 1.23151 0.95316 0.91815 1.59112 0.89849 1.85617 1.10624 0.99363 1.97051 1.23265 1.03370 0.93968 1.06348 1.19776 0.85278 0.85858 0.74954 1.90690 1.17220 1.85746 1.51331 1.50051 1.09133 1.06225 1.73306 1.23315 0.97334 0.78353 1.02077 1.23231 0.93749 0.93462 1.02421 1.21312 0.82110 0.99027 0.96396 1.45740 1.15549 1.36322 1.38913 1.17193 0.82787 0.80309 0.82025 1.90824 1.81056 1.41016 1.32580 1.24639 1.00288 1.08796 1.08549 1.21005 0.91478 0.98044 0.99220 1.20251 1.01011 1.00859 0.97080 1.25781 1.03120 1.01719 1.05459 1.82900 1.07994 1.31572 1.26830 1.23738 0.79267 0.96388 1.02600 0.91967 0.87812 0.87381 0.89963 0.88118 0.85551 0.90166 0.90476 0.75217 0.83601 0.81765 0.78694 0.87824 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.06 13.22 21.65 0.29 -55.77 16 2 C 0.01 0.70 5.49 84.86 0.47 1.17 16 3 Si 1.00 43.23 29.55 68.60 2.03 45.26 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.55 -31.16 9.50 67.95 0.65 -30.52 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 10 C -0.12 -4.78 5.91 71.23 0.42 -4.36 16 11 C 0.55 21.16 8.07 87.66 0.71 21.87 16 12 O -0.57 -27.63 16.59 -3.04 -0.05 -27.68 16 13 N -0.65 -16.61 3.61 -835.95 -3.02 -19.63 16 14 C 0.11 2.01 8.41 86.49 0.73 2.74 16 15 C -0.11 -1.21 3.93 -10.14 -0.04 -1.25 16 16 C 0.14 1.54 5.51 86.38 0.48 2.01 16 17 N -0.71 -8.42 5.55 -467.18 -2.59 -11.01 16 18 C 0.59 10.62 7.78 86.42 0.67 11.29 16 19 O -0.57 -14.93 16.84 -4.35 -0.07 -15.00 16 20 C -0.30 -4.36 6.45 24.08 0.16 -4.21 16 21 C -0.06 -0.87 10.01 21.72 0.22 -0.65 16 22 C -0.16 -1.44 10.15 21.08 0.21 -1.23 16 23 C -0.22 -1.50 10.92 66.81 0.73 -0.77 16 24 S 0.24 1.88 22.16 -56.49 -1.25 0.63 16 25 C 0.10 1.48 8.18 86.43 0.71 2.18 16 26 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 27 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 28 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 29 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.10 1.57 8.10 -2.39 -0.02 1.55 16 31 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.08 0.97 7.88 -2.39 -0.02 0.95 16 34 H 0.41 2.90 7.59 -92.70 -0.70 2.20 16 35 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 36 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 37 H 0.20 0.25 8.06 -2.91 -0.02 0.23 16 38 H 0.10 1.27 7.92 -2.39 -0.02 1.25 16 39 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -85.77 370.36 0.64 -85.13 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.38 Total: 9.59 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 6.10 Total: -1.72 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -5.33 Total: -86.41 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -0.12 Total: -42.68 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -6.75 SS G_CDS: -2.41 Total: -9.17 kcal Total: -85.77 0.64 -85.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297161043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.385 kcal (2) G-P(sol) polarization free energy of solvation -85.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds