Wall clock time and date at job start Sat Apr 11 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38361 * 119.86293 * 2 1 4 4 C 1.37945 * 120.16504 * 180.02562 * 3 2 1 5 5 N 1.48017 * 120.06216 * 179.97438 * 4 3 2 6 6 O 1.21799 * 119.99521 * 353.47502 * 5 4 3 7 7 O 1.21796 * 119.99948 * 173.47624 * 5 4 3 8 8 C 1.39597 * 119.87230 * 359.97376 * 4 3 2 9 9 C 1.47855 * 120.13294 * 180.02562 * 8 4 3 10 10 O 1.21560 * 119.99692 * 304.33398 * 9 8 4 11 11 N 1.34775 * 120.00004 * 124.33158 * 9 8 4 12 12 C 1.47060 * 136.05706 * 4.57463 * 11 9 8 13 13 C 1.53763 * 87.88867 * 152.96586 * 12 11 9 14 14 O 1.42897 * 114.39338 * 272.67882 * 13 12 11 15 15 C 1.50690 * 114.27123 * 139.79259 * 13 12 11 16 16 H 1.08001 * 120.00391 * 266.47991 * 15 13 12 17 17 C 1.37883 * 120.00193 * 86.47447 * 15 13 12 18 18 N 1.31513 * 120.00131 * 180.02562 * 17 15 13 19 19 Si 1.86802 * 119.99584 * 0.02562 * 17 15 13 20 20 H 1.48501 * 109.46810 * 90.00408 * 19 17 15 21 21 H 1.48499 * 109.46894 * 209.99940 * 19 17 15 22 22 H 1.48495 * 109.47216 * 330.00008 * 19 17 15 23 23 C 1.47068 * 136.05326 * 184.94775 * 11 9 8 24 24 C 1.39532 * 119.73022 * 359.73299 * 8 4 3 25 25 C 1.38107 * 119.83745 * 0.56285 * 24 8 4 26 26 Cl 1.73605 * 119.94099 * 179.70713 * 25 24 8 27 27 H 1.09004 * 109.47035 * 270.02134 * 1 2 3 28 28 H 1.08993 * 109.47064 * 30.02641 * 1 2 3 29 29 H 1.08999 * 109.46890 * 150.02511 * 1 2 3 30 30 H 1.08003 * 119.91293 * 359.97438 * 3 2 1 31 31 H 1.08995 * 113.47057 * 267.69535 * 12 11 9 32 32 H 1.09004 * 113.46922 * 38.13779 * 12 11 9 33 33 H 0.96702 * 114.00565 * 273.58136 * 14 13 12 34 34 H 0.97003 * 119.99870 * 180.02562 * 18 17 15 35 35 H 1.08993 * 113.47139 * 321.86477 * 23 11 9 36 36 H 1.09001 * 113.46747 * 92.24828 * 23 11 9 37 37 H 1.08009 * 120.08691 * 180.27575 * 24 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1999 0.0000 4 6 3.5753 1.2072 -0.0005 5 7 4.3100 2.4921 -0.0011 6 8 3.7024 3.5409 -0.1210 7 8 5.5221 2.5006 0.1183 8 6 4.2770 0.0003 -0.0005 9 6 5.7555 0.0014 -0.0005 10 8 6.3628 0.5956 -0.8699 11 7 6.4299 -0.6564 0.9633 12 6 6.0790 -1.5278 2.0947 13 6 7.4669 -2.1744 1.9535 14 8 7.5204 -3.2604 1.0263 15 6 8.1458 -2.4766 3.2644 16 1 8.8278 -1.7596 3.6972 17 6 7.8963 -3.6683 3.9115 18 7 8.4884 -3.9317 5.0559 19 14 6.7171 -4.9085 3.1627 20 1 7.4686 -5.8334 2.2766 21 1 6.0612 -5.6844 4.2458 22 1 5.6843 -4.1938 2.3705 23 6 7.8400 -0.8131 1.3504 24 6 3.5773 -1.2069 0.0057 25 6 2.1963 -1.2007 0.0000 26 17 1.3231 -2.7012 0.0000 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6522 2.1331 -0.0004 31 1 5.9448 -0.9889 3.0325 32 1 5.2567 -2.2099 1.8785 33 1 7.2848 -4.1166 1.4092 34 1 8.3131 -4.7702 5.5109 35 1 8.5180 -0.8861 0.5001 36 1 8.1703 -0.0850 2.0913 37 1 4.1144 -2.1439 0.0102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330805413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:35 Heat of formation + Delta-G solvation = -2.841040 kcal Electronic energy + Delta-G solvation = -27678.538348 eV Core-core repulsion = 23452.829679 eV Total energy + Delta-G solvation = -4225.708669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -42.28947 -40.48948 -39.58246 -37.86513 -37.07062 -36.42771 -34.72784 -33.70302 -32.65059 -32.17953 -29.54557 -27.89440 -26.81737 -25.55842 -25.40857 -23.45061 -22.42361 -20.85589 -19.56970 -18.83563 -18.47797 -17.80842 -17.52367 -17.22966 -16.72056 -16.45949 -16.02524 -15.37599 -14.93304 -14.84747 -14.68700 -13.92095 -13.75582 -13.51748 -13.30425 -13.03019 -12.92219 -12.83961 -12.51057 -12.40503 -12.27039 -12.15868 -11.55922 -11.45059 -11.31458 -11.09158 -11.06284 -10.99009 -10.67869 -10.22501 -10.06925 -9.80868 -9.50818 -9.42231 -9.18066 -8.81952 -8.22442 -6.51772 -4.58407 -0.54126 0.24775 1.07783 1.16954 1.42595 2.47395 2.76062 2.89207 2.90262 3.05592 3.15439 3.82854 3.92296 3.94045 4.17016 4.24984 4.44877 4.57691 4.74423 4.91937 5.00694 5.03890 5.07979 5.12716 5.34854 5.42190 5.48824 5.69805 5.88298 5.91632 6.07333 6.24387 6.27394 6.29276 6.48319 7.06764 7.62969 7.90352 8.04715 8.28115 8.38177 8.53297 9.04801 10.60256 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.011208 B = 0.004699 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.563650 B = 5956.650733 C = 7775.351160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.049 4.049 4 C -0.004 4.004 5 N 0.021 4.979 6 O -0.170 6.170 7 O -0.107 6.107 8 C -0.040 4.040 9 C 0.578 3.422 10 O -0.512 6.512 11 N -0.625 5.625 12 C 0.055 3.945 13 C 0.198 3.802 14 O -0.549 6.549 15 C -0.534 4.534 16 H 0.095 0.905 17 C 0.082 3.918 18 N -0.872 5.872 19 Si 0.858 3.142 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.259 1.259 23 C 0.128 3.872 24 C -0.076 4.076 25 C 0.002 3.998 26 Cl -0.032 7.032 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.167 0.833 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.352 0.648 34 H 0.272 0.728 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.988 3.596 -7.270 19.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.067 4.067 3 C -0.068 4.068 4 C -0.088 4.088 5 N 0.544 4.456 6 O -0.380 6.380 7 O -0.332 6.332 8 C -0.045 4.045 9 C 0.364 3.636 10 O -0.388 6.388 11 N -0.359 5.359 12 C -0.068 4.068 13 C 0.157 3.843 14 O -0.360 6.360 15 C -0.572 4.572 16 H 0.113 0.887 17 C -0.124 4.124 18 N -0.507 5.507 19 Si 0.686 3.314 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.185 1.185 23 C 0.007 3.993 24 C -0.096 4.096 25 C -0.025 4.025 26 Cl -0.002 7.002 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.184 0.816 31 H 0.115 0.885 32 H 0.082 0.918 33 H 0.205 0.795 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -18.059 3.626 -8.139 20.138 hybrid contribution -0.782 -1.046 0.189 1.320 sum -18.841 2.579 -7.950 20.611 Atomic orbital electron populations 1.20971 0.88066 1.04601 1.04077 1.19843 0.97962 0.89787 0.99071 1.20792 0.90484 0.99984 0.95525 1.21109 0.92327 0.83573 1.11757 1.43399 1.01572 1.02038 0.98602 1.94498 1.69888 1.19780 1.53865 1.94724 0.94688 1.93577 1.50249 1.19923 0.96107 0.91066 0.97402 1.17052 0.84607 0.79126 0.82809 1.90843 1.68118 1.43095 1.36748 1.49567 1.11562 1.47258 1.27500 1.24705 1.02366 0.91518 0.88183 1.20261 0.90496 0.84637 0.88898 1.86480 1.91817 1.17570 1.40161 1.21121 1.28311 1.05236 1.02489 0.88692 1.25002 0.95112 0.97653 0.94670 1.69841 1.41140 1.24706 1.14996 0.87348 0.82044 0.82599 0.79362 1.19100 1.20883 1.18495 1.23231 0.81595 0.95813 0.98663 1.21315 0.92007 0.98323 0.97939 1.21073 0.92261 0.88416 1.00759 1.98418 1.75572 1.30106 1.96143 0.89424 0.89973 0.89877 0.81558 0.88467 0.91829 0.79539 0.91741 0.90393 0.88134 0.81946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 9.61 36.00 0.35 -0.33 16 2 C -0.06 -0.58 5.89 -104.50 -0.62 -1.20 16 3 C -0.05 -0.51 9.19 -39.64 -0.36 -0.87 16 4 C 0.00 -0.06 6.86 -79.55 -0.55 -0.60 16 5 N 0.02 0.36 4.45 34.16 0.15 0.51 16 6 O -0.17 -2.72 18.46 -29.46 -0.54 -3.26 16 7 O -0.11 -2.10 15.01 -37.07 -0.56 -2.66 16 8 C -0.04 -0.63 5.53 -104.97 -0.58 -1.21 16 9 C 0.58 11.19 6.08 -12.33 -0.07 11.11 16 10 O -0.51 -11.38 15.58 -18.73 -0.29 -11.67 16 11 N -0.63 -12.14 3.68 -186.14 -0.69 -12.82 16 12 C 0.06 1.05 7.00 -8.36 -0.06 0.99 16 13 C 0.20 4.28 1.10 -91.12 -0.10 4.18 16 14 O -0.55 -12.20 13.33 -35.23 -0.47 -12.67 16 15 C -0.53 -13.16 9.28 -34.44 -0.32 -13.47 16 16 H 0.10 2.51 8.06 -52.49 -0.42 2.08 16 17 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 18 N -0.87 -23.53 13.96 55.43 0.77 -22.76 16 19 Si 0.86 17.97 24.42 -169.99 -4.15 13.82 16 20 H -0.26 -5.42 7.06 56.52 0.40 -5.02 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 22 H -0.26 -4.99 5.50 56.52 0.31 -4.68 16 23 C 0.13 2.57 8.03 -8.50 -0.07 2.50 16 24 C -0.08 -1.00 8.69 -39.15 -0.34 -1.34 16 25 C 0.00 0.02 6.31 -39.55 -0.25 -0.23 16 26 Cl -0.03 -0.29 27.27 -51.86 -1.41 -1.71 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.33 8.08 -51.93 -0.42 -0.09 16 29 H 0.08 0.44 6.88 -51.93 -0.36 0.08 16 30 H 0.17 1.33 7.62 -52.48 -0.40 0.93 16 31 H 0.10 1.76 8.10 -51.93 -0.42 1.34 16 32 H 0.06 1.11 5.98 -51.93 -0.31 0.80 16 33 H 0.35 7.46 3.16 45.56 0.14 7.61 16 34 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 36 H 0.10 1.88 8.10 -51.93 -0.42 1.46 16 37 H 0.16 2.12 7.46 -52.48 -0.39 1.73 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -30.07 332.90 -8.31 -38.38 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -3.07 Total: 8.34 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -3.07 Total: 1.49 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.24 Total: -35.08 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -1.86 Total: -30.26 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -4.15 Total: 13.82 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.41 Total: -1.71 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.07 -8.31 -38.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330805413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.544 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds