Wall clock time and date at job start Sat Apr 11 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38361 * 119.86293 * 2 1 4 4 C 1.37945 * 120.16504 * 180.02562 * 3 2 1 5 5 N 1.48017 * 120.06216 * 179.97438 * 4 3 2 6 6 O 1.21799 * 119.99521 * 353.47502 * 5 4 3 7 7 O 1.21796 * 119.99948 * 173.47624 * 5 4 3 8 8 C 1.39597 * 119.87230 * 359.97376 * 4 3 2 9 9 C 1.47855 * 120.13294 * 180.02562 * 8 4 3 10 10 O 1.21560 * 119.99692 * 304.33398 * 9 8 4 11 11 N 1.34775 * 120.00004 * 124.33158 * 9 8 4 12 12 C 1.47060 * 136.05706 * 4.57463 * 11 9 8 13 13 C 1.53763 * 87.88867 * 152.96586 * 12 11 9 14 14 O 1.42897 * 114.39338 * 272.67882 * 13 12 11 15 15 C 1.50690 * 114.27123 * 139.79259 * 13 12 11 16 16 H 1.08001 * 120.00391 * 266.47991 * 15 13 12 17 17 C 1.37883 * 120.00193 * 86.47447 * 15 13 12 18 18 N 1.31513 * 120.00131 * 180.02562 * 17 15 13 19 19 Si 1.86802 * 119.99584 * 0.02562 * 17 15 13 20 20 H 1.48501 * 109.46810 * 90.00408 * 19 17 15 21 21 H 1.48499 * 109.46894 * 209.99940 * 19 17 15 22 22 H 1.48495 * 109.47216 * 330.00008 * 19 17 15 23 23 C 1.47068 * 136.05326 * 184.94775 * 11 9 8 24 24 C 1.39532 * 119.73022 * 359.73299 * 8 4 3 25 25 C 1.38107 * 119.83745 * 0.56285 * 24 8 4 26 26 Cl 1.73605 * 119.94099 * 179.70713 * 25 24 8 27 27 H 1.09004 * 109.47035 * 270.02134 * 1 2 3 28 28 H 1.08993 * 109.47064 * 30.02641 * 1 2 3 29 29 H 1.08999 * 109.46890 * 150.02511 * 1 2 3 30 30 H 1.08003 * 119.91293 * 359.97438 * 3 2 1 31 31 H 1.08995 * 113.47057 * 267.69535 * 12 11 9 32 32 H 1.09004 * 113.46922 * 38.13779 * 12 11 9 33 33 H 0.96702 * 114.00565 * 273.58136 * 14 13 12 34 34 H 0.97003 * 119.99870 * 180.02562 * 18 17 15 35 35 H 1.08993 * 113.47139 * 321.86477 * 23 11 9 36 36 H 1.09001 * 113.46747 * 92.24828 * 23 11 9 37 37 H 1.08009 * 120.08691 * 180.27575 * 24 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1999 0.0000 4 6 3.5753 1.2072 -0.0005 5 7 4.3100 2.4921 -0.0011 6 8 3.7024 3.5409 -0.1210 7 8 5.5221 2.5006 0.1183 8 6 4.2770 0.0003 -0.0005 9 6 5.7555 0.0014 -0.0005 10 8 6.3628 0.5956 -0.8699 11 7 6.4299 -0.6564 0.9633 12 6 6.0790 -1.5278 2.0947 13 6 7.4669 -2.1744 1.9535 14 8 7.5204 -3.2604 1.0263 15 6 8.1458 -2.4766 3.2644 16 1 8.8278 -1.7596 3.6972 17 6 7.8963 -3.6683 3.9115 18 7 8.4884 -3.9317 5.0559 19 14 6.7171 -4.9085 3.1627 20 1 7.4686 -5.8334 2.2766 21 1 6.0612 -5.6844 4.2458 22 1 5.6843 -4.1938 2.3705 23 6 7.8400 -0.8131 1.3504 24 6 3.5773 -1.2069 0.0057 25 6 2.1963 -1.2007 0.0000 26 17 1.3231 -2.7012 0.0000 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6522 2.1331 -0.0004 31 1 5.9448 -0.9889 3.0325 32 1 5.2567 -2.2099 1.8785 33 1 7.2848 -4.1166 1.4092 34 1 8.3131 -4.7702 5.5109 35 1 8.5180 -0.8861 0.5001 36 1 8.1703 -0.0850 2.0913 37 1 4.1144 -2.1439 0.0102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330805413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:32 Heat of formation + Delta-G solvation = -22.681192 kcal Electronic energy + Delta-G solvation = -27679.398682 eV Core-core repulsion = 23452.829679 eV Total energy + Delta-G solvation = -4226.569002 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.50457 -41.84246 -40.80931 -39.34828 -37.90832 -37.71249 -36.44452 -34.61171 -34.55862 -33.17542 -31.02553 -28.92748 -28.00484 -27.10613 -27.07343 -24.39199 -23.56026 -22.32974 -21.02159 -20.09107 -19.71069 -19.40886 -18.81910 -18.68140 -18.21619 -17.78460 -17.34889 -16.51289 -16.17458 -15.91762 -15.73359 -15.53471 -15.32584 -14.91735 -14.55395 -14.28689 -14.16168 -13.95163 -13.60218 -13.55291 -13.13409 -13.02386 -12.95479 -12.81645 -12.70098 -12.44647 -12.39205 -12.29153 -12.23019 -11.95869 -11.63595 -11.14272 -11.01387 -10.75340 -10.56241 -10.36230 -9.82323 -8.44970 -6.58176 -1.64015 -0.66585 -0.06350 0.09122 0.55903 1.21587 1.22831 1.25884 1.38551 1.52461 1.88583 2.14828 2.68783 2.82492 2.95032 3.17290 3.24515 3.33352 3.52593 3.70919 3.96221 4.11765 4.18954 4.25397 4.29800 4.34340 4.51320 4.60365 4.66541 4.68637 4.72241 4.83973 4.89380 5.05121 5.21717 5.22521 5.99717 6.32318 6.50482 6.53283 6.62211 6.79033 7.09627 8.70349 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.011208 B = 0.004699 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.563650 B = 5956.650733 C = 7775.351160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.040 4.040 3 C -0.032 4.032 4 C -0.020 4.020 5 N 0.022 4.978 6 O -0.121 6.121 7 O -0.201 6.201 8 C -0.067 4.067 9 C 0.577 3.423 10 O -0.551 6.551 11 N -0.628 5.628 12 C 0.071 3.929 13 C 0.192 3.808 14 O -0.554 6.554 15 C -0.542 4.542 16 H 0.059 0.941 17 C 0.030 3.970 18 N -0.920 5.920 19 Si 0.915 3.085 20 H -0.255 1.255 21 H -0.280 1.280 22 H -0.229 1.229 23 C 0.123 3.877 24 C -0.077 4.077 25 C 0.006 3.994 26 Cl -0.012 7.012 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.200 0.800 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.356 0.644 34 H 0.275 0.725 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.090 2.973 -8.278 24.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.042 4.042 3 C -0.051 4.051 4 C -0.104 4.104 5 N 0.541 4.459 6 O -0.349 6.349 7 O -0.404 6.404 8 C -0.072 4.072 9 C 0.366 3.634 10 O -0.429 6.429 11 N -0.361 5.361 12 C -0.052 4.052 13 C 0.150 3.850 14 O -0.367 6.367 15 C -0.580 4.580 16 H 0.078 0.922 17 C -0.171 4.171 18 N -0.557 5.557 19 Si 0.739 3.261 20 H -0.181 1.181 21 H -0.206 1.206 22 H -0.153 1.153 23 C 0.001 3.999 24 C -0.097 4.097 25 C -0.021 4.021 26 Cl 0.018 6.982 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.108 0.892 30 H 0.217 0.783 31 H 0.121 0.879 32 H 0.104 0.896 33 H 0.210 0.790 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -22.992 2.930 -9.133 24.913 hybrid contribution 0.595 -0.767 0.481 1.083 sum -22.397 2.163 -8.652 24.107 Atomic orbital electron populations 1.21183 0.84791 1.06248 1.05659 1.20297 0.99846 0.88372 0.95708 1.21236 0.88442 1.01991 0.93397 1.21294 0.93488 0.81648 1.13947 1.43761 1.01426 1.02988 0.97774 1.94422 1.69357 1.20823 1.50270 1.94762 0.96023 1.94132 1.55458 1.19570 0.93601 0.92767 1.01254 1.17606 0.86401 0.77799 0.81640 1.90799 1.69656 1.44386 1.38095 1.49536 1.10949 1.47813 1.27828 1.24466 1.00993 0.91337 0.88381 1.20198 0.92378 0.84889 0.87494 1.86479 1.92111 1.17942 1.40129 1.21206 1.28118 1.04912 1.03778 0.92241 1.25813 0.96848 0.99632 0.94841 1.69985 1.43241 1.25644 1.16832 0.86386 0.80543 0.80084 0.79081 1.18057 1.20583 1.15286 1.23197 0.82632 0.95522 0.98529 1.21271 0.93213 0.97082 0.98117 1.21160 0.91414 0.89902 0.99627 1.98435 1.74806 1.29092 1.95879 0.87547 0.87510 0.89181 0.78339 0.87913 0.89636 0.79020 0.91560 0.91175 0.87705 0.82185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 9.61 71.23 0.68 0.07 16 2 C -0.04 -0.53 5.89 -19.79 -0.12 -0.64 16 3 C -0.03 -0.53 9.19 22.23 0.20 -0.32 16 4 C -0.02 -0.55 6.86 36.63 0.25 -0.30 16 5 N 0.02 0.75 4.45 -45.85 -0.20 0.54 16 6 O -0.12 -3.63 18.46 18.89 0.35 -3.29 16 7 O -0.20 -8.36 15.01 26.17 0.39 -7.97 16 8 C -0.07 -2.06 5.53 -20.09 -0.11 -2.18 16 9 C 0.58 22.97 6.08 86.79 0.53 23.50 16 10 O -0.55 -25.82 15.58 19.09 0.30 -25.53 16 11 N -0.63 -24.89 3.68 -861.59 -3.17 -28.07 16 12 C 0.07 2.64 7.00 83.27 0.58 3.22 16 13 C 0.19 8.35 1.10 -11.12 -0.01 8.34 16 14 O -0.55 -24.25 13.33 -148.98 -1.99 -26.24 16 15 C -0.54 -27.64 9.28 25.60 0.24 -27.40 16 16 H 0.06 3.35 8.06 -2.91 -0.02 3.33 16 17 C 0.03 1.55 5.47 84.66 0.46 2.01 16 18 N -0.92 -51.14 13.96 21.45 0.30 -50.84 16 19 Si 0.91 36.07 24.42 68.60 1.68 37.74 16 20 H -0.25 -9.66 7.06 99.48 0.70 -8.96 16 21 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 22 H -0.23 -7.83 5.50 99.48 0.55 -7.28 16 23 C 0.12 5.17 8.03 83.18 0.67 5.83 16 24 C -0.08 -1.84 8.69 22.55 0.20 -1.64 16 25 C 0.01 0.11 6.31 22.29 0.14 0.25 16 26 Cl -0.01 -0.17 27.27 -2.72 -0.07 -0.24 16 27 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.11 0.12 8.08 -2.39 -0.02 0.10 16 29 H 0.09 0.41 6.88 -2.39 -0.02 0.40 16 30 H 0.20 2.01 7.62 -2.91 -0.02 1.98 16 31 H 0.10 3.70 8.10 -2.39 -0.02 3.68 16 32 H 0.09 2.79 5.98 -2.38 -0.01 2.78 16 33 H 0.36 14.45 3.16 -74.06 -0.23 14.22 16 34 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.11 4.21 8.10 -2.39 -0.02 4.19 16 37 H 0.16 3.83 7.46 -2.91 -0.02 3.81 16 Total: -1.00 -70.48 332.90 2.05 -68.43 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.76 Total: 24.71 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 3.71 Total: 10.75 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -3.08 Total: -78.37 kcal Atomic # 8 Polarization: -62.07 SS G_CDS: -0.95 Total: -63.02 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 1.68 Total: 37.74 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.07 Total: -0.24 kcal Total: -70.48 2.05 -68.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330805413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.750 kcal (2) G-P(sol) polarization free energy of solvation -70.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds