Wall clock time and date at job start Sat Apr 11 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38315 * 119.84246 * 2 1 4 4 C 1.38108 * 120.12816 * 179.72507 * 3 2 1 5 5 Cl 1.73601 * 120.09350 * 180.25553 * 4 3 2 6 6 C 1.39736 * 119.81661 * 0.50996 * 4 3 2 7 7 C 1.47769 * 120.15519 * 179.77156 * 6 4 3 8 8 O 1.21554 * 120.00400 * 26.99392 * 7 6 4 9 9 N 1.34783 * 119.99828 * 206.99190 * 7 6 4 10 10 C 1.47067 * 136.05737 * 353.57262 * 9 7 6 11 11 C 1.53754 * 87.88629 * 152.96555 * 10 9 7 12 12 O 1.42898 * 114.39252 * 272.67327 * 11 10 9 13 13 C 1.50700 * 114.26443 * 139.79294 * 11 10 9 14 14 H 1.08001 * 119.99878 * 266.47039 * 13 11 10 15 15 C 1.37876 * 120.00018 * 86.47576 * 13 11 10 16 16 N 1.31509 * 120.00278 * 179.97438 * 15 13 11 17 17 Si 1.86805 * 119.99985 * 359.97438 * 15 13 11 18 18 H 1.48501 * 109.47263 * 90.00124 * 17 15 13 19 19 H 1.48503 * 109.47103 * 210.00001 * 17 15 13 20 20 H 1.48498 * 109.47073 * 329.99943 * 17 15 13 21 21 C 1.47062 * 136.05612 * 173.94672 * 9 7 6 22 22 C 1.39582 * 119.68756 * 359.49160 * 6 4 3 23 23 C 1.37940 * 119.86822 * 0.25255 * 22 6 4 24 24 N 1.48021 * 119.90902 * 179.97438 * 23 22 6 25 25 O 1.21796 * 120.00421 * 353.45937 * 24 23 22 26 26 O 1.21810 * 119.99574 * 173.45965 * 24 23 22 27 27 H 1.08995 * 109.46806 * 262.74004 * 1 2 3 28 28 H 1.08997 * 109.46691 * 22.73463 * 1 2 3 29 29 H 1.08990 * 109.47230 * 142.73860 * 1 2 3 30 30 H 1.07997 * 119.93277 * 359.95441 * 3 2 1 31 31 H 1.08998 * 113.46494 * 267.69707 * 10 9 7 32 32 H 1.08995 * 113.46569 * 38.13475 * 10 9 7 33 33 H 0.96699 * 114.00640 * 273.58727 * 12 11 10 34 34 H 0.97003 * 120.00675 * 180.02562 * 16 15 13 35 35 H 1.09004 * 113.47137 * 321.86115 * 21 9 7 36 36 H 1.09001 * 113.47126 * 92.24909 * 21 9 7 37 37 H 1.08001 * 120.06982 * 180.27364 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1954 1.1997 0.0000 4 6 3.5764 1.2066 0.0057 5 17 4.4393 2.7130 0.0124 6 6 4.2773 -0.0022 0.0007 7 6 5.7550 -0.0036 0.0017 8 8 6.3633 0.9317 0.4842 9 7 6.4283 -1.0419 -0.5323 10 6 6.0786 -2.3600 -1.0830 11 6 7.3479 -2.2727 -1.9463 12 8 7.1654 -1.6090 -3.1986 13 6 8.1070 -3.5692 -2.0643 14 1 8.9172 -3.7844 -1.3835 15 6 7.7671 -4.4806 -3.0415 16 7 8.4298 -5.6118 -3.1449 17 14 6.3653 -4.1085 -4.2188 18 1 6.8954 -3.4012 -5.4121 19 1 5.7232 -5.3791 -4.6413 20 1 5.3628 -3.2494 -3.5390 21 6 7.8365 -1.3580 -0.8146 22 6 3.5750 -1.2085 0.0008 23 6 2.1956 -1.2003 0.0004 24 7 1.4499 -2.4790 -0.0002 25 8 2.0483 -3.5330 -0.1205 26 8 0.2377 -2.4771 0.1197 27 1 -0.3633 -0.1299 1.0194 28 1 -0.3632 0.9478 -0.3972 29 1 -0.3633 -0.8178 -0.6221 30 1 1.6517 2.1329 -0.0007 31 1 6.1101 -3.1611 -0.3447 32 1 5.1560 -2.3570 -1.6634 33 1 6.8576 -2.1879 -3.9095 34 1 8.1910 -6.2528 -3.8326 35 1 8.4116 -0.5015 -1.1664 36 1 8.3317 -1.8943 -0.0051 37 1 4.1104 -2.1464 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331136310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:42 Heat of formation + Delta-G solvation = 5.324758 kcal Electronic energy + Delta-G solvation = -27625.893647 eV Core-core repulsion = 23400.539074 eV Total energy + Delta-G solvation = -4225.354573 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -42.47233 -40.64885 -39.48566 -37.78693 -36.93240 -36.81419 -34.77527 -33.50074 -32.63670 -32.16527 -29.64758 -28.13737 -26.43490 -25.71892 -25.47466 -23.27438 -22.75643 -20.94398 -19.74491 -18.88755 -18.43436 -17.80628 -17.62256 -17.02856 -16.81647 -16.31893 -16.29226 -15.50255 -15.04380 -14.68529 -14.46840 -13.94591 -13.69921 -13.39966 -13.30556 -13.24377 -13.00518 -12.84189 -12.62919 -12.38548 -12.24329 -11.93611 -11.55313 -11.42209 -11.27945 -11.27066 -11.05746 -10.93443 -10.66924 -10.20286 -9.98658 -9.73676 -9.53660 -9.41984 -9.17084 -8.81230 -8.28169 -6.50452 -4.57764 -0.52776 0.18034 0.95108 1.10138 1.59083 2.37887 2.90850 2.93401 2.96760 3.11374 3.19354 3.82233 3.85286 3.95349 4.18667 4.28150 4.47114 4.59377 4.78878 4.88523 5.00845 5.03723 5.14732 5.20827 5.37478 5.42215 5.60736 5.63907 5.80685 5.90640 6.02076 6.19539 6.20569 6.23897 6.44015 7.06867 7.47857 7.90604 7.97396 8.22651 8.37791 8.53244 9.06278 10.61451 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.010876 B = 0.004839 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.840901 B = 5785.343684 C = 7620.897171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.012 3.988 3 C -0.126 4.126 4 C 0.058 3.942 5 Cl -0.006 7.006 6 C -0.117 4.117 7 C 0.578 3.422 8 O -0.525 6.525 9 N -0.628 5.628 10 C 0.047 3.953 11 C 0.200 3.800 12 O -0.550 6.550 13 C -0.536 4.536 14 H 0.095 0.905 15 C 0.084 3.916 16 N -0.870 5.870 17 Si 0.856 3.144 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.260 1.260 21 C 0.127 3.873 22 C -0.011 4.011 23 C -0.056 4.056 24 N 0.032 4.968 25 O -0.152 6.152 26 O -0.156 6.156 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.163 0.837 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.353 0.647 34 H 0.273 0.727 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.980 11.315 5.367 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.010 3.990 3 C -0.145 4.145 4 C 0.029 3.971 5 Cl 0.024 6.976 6 C -0.122 4.122 7 C 0.366 3.634 8 O -0.403 6.403 9 N -0.361 5.361 10 C -0.076 4.076 11 C 0.159 3.841 12 O -0.361 6.361 13 C -0.574 4.574 14 H 0.113 0.887 15 C -0.122 4.122 16 N -0.505 5.505 17 Si 0.685 3.315 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.185 1.185 21 C 0.005 3.995 22 C -0.031 4.031 23 C -0.140 4.140 24 N 0.551 4.449 25 O -0.368 6.368 26 O -0.370 6.370 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.121 0.879 30 H 0.180 0.820 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.206 0.794 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -14.091 13.045 5.950 20.103 hybrid contribution -1.080 -0.718 -0.997 1.636 sum -15.171 12.326 4.953 20.165 Atomic orbital electron populations 1.21378 0.87488 1.04993 1.05085 1.19945 0.98477 0.89673 0.90925 1.20971 0.91361 0.98478 1.03706 1.21382 0.92477 0.88793 0.94418 1.98460 1.76293 1.27514 1.95301 1.19839 0.95410 0.91109 1.05807 1.17101 0.84948 0.82552 0.78825 1.90828 1.68662 1.35131 1.45716 1.49607 1.11789 1.15978 1.58748 1.24828 1.02424 0.82668 0.97672 1.20239 0.90648 0.91768 0.81446 1.86464 1.89569 1.40237 1.19860 1.21097 1.19093 0.98700 1.18508 0.88701 1.24975 0.95738 0.94813 0.96701 1.69828 1.39306 1.08106 1.33261 0.87363 0.83173 0.78581 0.82385 1.19219 1.20633 1.18505 1.23239 0.82007 0.97923 0.96305 1.21464 0.91276 1.00292 0.90035 1.20863 0.92080 0.84101 1.16969 1.43414 1.01071 1.02507 0.97932 1.94625 1.70433 1.18940 1.52796 1.94453 0.96084 1.93605 1.52826 0.88682 0.90308 0.87865 0.81979 0.87767 0.91521 0.79408 0.91663 0.90508 0.88203 0.81178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 8.65 36.01 0.31 -0.66 16 2 C 0.01 0.12 5.89 -104.54 -0.62 -0.50 16 3 C -0.13 -1.20 9.44 -39.60 -0.37 -1.57 16 4 C 0.06 0.74 6.34 -39.07 -0.25 0.49 16 5 Cl -0.01 -0.07 26.42 -51.86 -1.37 -1.44 16 6 C -0.12 -1.76 5.84 -104.94 -0.61 -2.37 16 7 C 0.58 10.45 7.67 -12.36 -0.09 10.36 16 8 O -0.53 -10.43 15.42 5.32 0.08 -10.35 16 9 N -0.63 -11.76 3.68 -186.21 -0.68 -12.44 16 10 C 0.05 0.89 5.14 -8.37 -0.04 0.84 16 11 C 0.20 4.33 1.10 -91.12 -0.10 4.23 16 12 O -0.55 -12.45 13.33 -35.23 -0.47 -12.92 16 13 C -0.54 -13.23 9.28 -34.44 -0.32 -13.55 16 14 H 0.10 2.49 8.06 -52.49 -0.42 2.06 16 15 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 16 N -0.87 -23.66 13.96 55.43 0.77 -22.89 16 17 Si 0.86 18.56 24.42 -169.99 -4.15 14.41 16 18 H -0.27 -5.61 7.06 56.52 0.40 -5.21 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.26 -5.32 5.50 56.52 0.31 -5.01 16 21 C 0.13 2.45 8.03 -8.51 -0.07 2.38 16 22 C -0.01 -0.16 8.22 -39.19 -0.32 -0.48 16 23 C -0.06 -0.73 6.82 -80.00 -0.55 -1.27 16 24 N 0.03 0.46 4.45 33.94 0.15 0.61 16 25 O -0.15 -2.40 18.46 -29.46 -0.54 -2.94 16 26 O -0.16 -2.04 15.34 -29.46 -0.45 -2.49 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.38 8.03 -51.93 -0.42 -0.04 16 29 H 0.10 0.87 5.88 -51.93 -0.31 0.56 16 30 H 0.16 0.99 8.05 -52.49 -0.42 0.57 16 31 H 0.10 1.83 8.10 -51.93 -0.42 1.41 16 32 H 0.07 1.23 6.10 -51.93 -0.32 0.91 16 33 H 0.35 7.72 3.16 45.56 0.14 7.86 16 34 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.10 1.77 8.10 -51.93 -0.42 1.35 16 37 H 0.17 2.47 5.08 -52.49 -0.27 2.21 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -28.97 328.17 -7.77 -36.74 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -2.92 Total: 8.83 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -3.13 Total: -0.05 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.24 Total: -34.72 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -1.38 Total: -28.70 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -4.15 Total: 14.41 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.37 Total: -1.44 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.97 -7.77 -36.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331136310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.061 kcal (2) G-P(sol) polarization free energy of solvation -28.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds