Wall clock time and date at job start Sat Apr 11 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38315 * 119.84246 * 2 1 4 4 C 1.38108 * 120.12816 * 179.72507 * 3 2 1 5 5 Cl 1.73601 * 120.09350 * 180.25553 * 4 3 2 6 6 C 1.39736 * 119.81661 * 0.50996 * 4 3 2 7 7 C 1.47769 * 120.15519 * 179.77156 * 6 4 3 8 8 O 1.21554 * 120.00400 * 26.99392 * 7 6 4 9 9 N 1.34783 * 119.99828 * 206.99190 * 7 6 4 10 10 C 1.47067 * 136.05737 * 353.57262 * 9 7 6 11 11 C 1.53754 * 87.88629 * 152.96555 * 10 9 7 12 12 O 1.42898 * 114.39252 * 272.67327 * 11 10 9 13 13 C 1.50700 * 114.26443 * 139.79294 * 11 10 9 14 14 H 1.08001 * 119.99878 * 266.47039 * 13 11 10 15 15 C 1.37876 * 120.00018 * 86.47576 * 13 11 10 16 16 N 1.31509 * 120.00278 * 179.97438 * 15 13 11 17 17 Si 1.86805 * 119.99985 * 359.97438 * 15 13 11 18 18 H 1.48501 * 109.47263 * 90.00124 * 17 15 13 19 19 H 1.48503 * 109.47103 * 210.00001 * 17 15 13 20 20 H 1.48498 * 109.47073 * 329.99943 * 17 15 13 21 21 C 1.47062 * 136.05612 * 173.94672 * 9 7 6 22 22 C 1.39582 * 119.68756 * 359.49160 * 6 4 3 23 23 C 1.37940 * 119.86822 * 0.25255 * 22 6 4 24 24 N 1.48021 * 119.90902 * 179.97438 * 23 22 6 25 25 O 1.21796 * 120.00421 * 353.45937 * 24 23 22 26 26 O 1.21810 * 119.99574 * 173.45965 * 24 23 22 27 27 H 1.08995 * 109.46806 * 262.74004 * 1 2 3 28 28 H 1.08997 * 109.46691 * 22.73463 * 1 2 3 29 29 H 1.08990 * 109.47230 * 142.73860 * 1 2 3 30 30 H 1.07997 * 119.93277 * 359.95441 * 3 2 1 31 31 H 1.08998 * 113.46494 * 267.69707 * 10 9 7 32 32 H 1.08995 * 113.46569 * 38.13475 * 10 9 7 33 33 H 0.96699 * 114.00640 * 273.58727 * 12 11 10 34 34 H 0.97003 * 120.00675 * 180.02562 * 16 15 13 35 35 H 1.09004 * 113.47137 * 321.86115 * 21 9 7 36 36 H 1.09001 * 113.47126 * 92.24909 * 21 9 7 37 37 H 1.08001 * 120.06982 * 180.27364 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1954 1.1997 0.0000 4 6 3.5764 1.2066 0.0057 5 17 4.4393 2.7130 0.0124 6 6 4.2773 -0.0022 0.0007 7 6 5.7550 -0.0036 0.0017 8 8 6.3633 0.9317 0.4842 9 7 6.4283 -1.0419 -0.5323 10 6 6.0786 -2.3600 -1.0830 11 6 7.3479 -2.2727 -1.9463 12 8 7.1654 -1.6090 -3.1986 13 6 8.1070 -3.5692 -2.0643 14 1 8.9172 -3.7844 -1.3835 15 6 7.7671 -4.4806 -3.0415 16 7 8.4298 -5.6118 -3.1449 17 14 6.3653 -4.1085 -4.2188 18 1 6.8954 -3.4012 -5.4121 19 1 5.7232 -5.3791 -4.6413 20 1 5.3628 -3.2494 -3.5390 21 6 7.8365 -1.3580 -0.8146 22 6 3.5750 -1.2085 0.0008 23 6 2.1956 -1.2003 0.0004 24 7 1.4499 -2.4790 -0.0002 25 8 2.0483 -3.5330 -0.1205 26 8 0.2377 -2.4771 0.1197 27 1 -0.3633 -0.1299 1.0194 28 1 -0.3632 0.9478 -0.3972 29 1 -0.3633 -0.8178 -0.6221 30 1 1.6517 2.1329 -0.0007 31 1 6.1101 -3.1611 -0.3447 32 1 5.1560 -2.3570 -1.6634 33 1 6.8576 -2.1879 -3.9095 34 1 8.1910 -6.2528 -3.8326 35 1 8.4116 -0.5015 -1.1664 36 1 8.3317 -1.8943 -0.0051 37 1 4.1104 -2.1464 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331136310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:37 Heat of formation + Delta-G solvation = -13.996506 kcal Electronic energy + Delta-G solvation = -27626.731480 eV Core-core repulsion = 23400.539074 eV Total energy + Delta-G solvation = -4226.192406 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -43.51721 -41.97386 -40.73496 -39.22210 -37.93641 -37.86946 -36.47208 -34.59957 -34.45596 -33.12239 -31.06052 -29.25691 -27.65287 -27.21926 -27.02144 -24.21890 -23.83305 -22.37156 -21.17370 -19.94334 -19.82063 -19.31666 -18.85347 -18.44216 -18.21941 -17.69945 -17.36465 -16.78435 -16.45506 -15.77931 -15.60704 -15.47501 -15.20490 -14.89288 -14.50373 -14.29556 -14.12277 -14.08808 -13.90837 -13.74637 -13.35230 -13.01350 -12.86456 -12.72073 -12.60942 -12.50640 -12.42473 -12.34807 -11.99438 -11.85695 -11.51140 -11.14022 -10.97692 -10.66650 -10.54674 -10.50517 -9.82696 -8.47044 -6.58751 -1.52483 -0.81781 -0.05480 0.09551 0.62054 1.18360 1.22615 1.27850 1.35098 1.55366 1.97521 2.11734 2.67734 2.80452 2.93994 3.13426 3.23375 3.33905 3.50899 3.71621 3.94988 4.05588 4.12519 4.20297 4.31309 4.32434 4.50171 4.60099 4.63755 4.68520 4.75032 4.82282 4.85364 4.95900 5.20953 5.34231 5.97872 6.39801 6.49015 6.51246 6.58809 6.78861 7.09129 8.68148 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.010876 B = 0.004839 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.840901 B = 5785.343684 C = 7620.897171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.031 3.969 3 C -0.103 4.103 4 C 0.054 3.946 5 Cl -0.011 7.011 6 C -0.139 4.139 7 C 0.577 3.423 8 O -0.547 6.547 9 N -0.631 5.631 10 C 0.063 3.937 11 C 0.187 3.813 12 O -0.556 6.556 13 C -0.540 4.540 14 H 0.066 0.934 15 C 0.036 3.964 16 N -0.917 5.917 17 Si 0.909 3.091 18 H -0.253 1.253 19 H -0.281 1.281 20 H -0.242 1.242 21 C 0.127 3.873 22 C -0.017 4.017 23 C -0.067 4.067 24 N 0.033 4.967 25 O -0.219 6.219 26 O -0.111 6.111 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.208 0.792 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.355 0.645 34 H 0.275 0.725 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.755 13.763 5.379 23.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.029 3.971 3 C -0.122 4.122 4 C 0.026 3.974 5 Cl 0.019 6.981 6 C -0.144 4.144 7 C 0.366 3.634 8 O -0.427 6.427 9 N -0.364 5.364 10 C -0.060 4.060 11 C 0.146 3.854 12 O -0.368 6.368 13 C -0.578 4.578 14 H 0.084 0.916 15 C -0.166 4.166 16 N -0.554 5.554 17 Si 0.734 3.266 18 H -0.179 1.179 19 H -0.207 1.207 20 H -0.166 1.166 21 C 0.005 3.995 22 C -0.037 4.037 23 C -0.151 4.151 24 N 0.549 4.451 25 O -0.418 6.418 26 O -0.340 6.340 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.113 0.887 30 H 0.225 0.775 31 H 0.130 0.870 32 H 0.092 0.908 33 H 0.208 0.792 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.129 0.871 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -17.746 15.421 5.955 24.252 hybrid contribution -0.029 -1.343 -0.907 1.621 sum -17.775 14.078 5.048 23.230 Atomic orbital electron populations 1.21559 0.84763 1.06771 1.06002 1.20410 1.00165 0.88436 0.88059 1.21423 0.89824 0.99932 1.00989 1.21572 0.93683 0.87685 0.94496 1.98462 1.76791 1.27549 1.95327 1.19544 0.93392 0.92511 1.08963 1.17570 0.86361 0.81594 0.77827 1.90805 1.69650 1.35659 1.46581 1.49557 1.11214 1.16243 1.59392 1.24559 1.01002 0.83224 0.97206 1.20280 0.92354 0.90922 0.81855 1.86457 1.89741 1.40359 1.20270 1.21225 1.18593 1.00098 1.17844 0.91604 1.25691 0.98117 0.94454 0.98378 1.69954 1.41446 1.09406 1.34558 0.86474 0.80626 0.78736 0.80723 1.17857 1.20713 1.16605 1.23181 0.82861 0.97529 0.95884 1.21278 0.92100 0.99535 0.90760 1.20974 0.91717 0.84321 1.18111 1.43566 1.01128 1.02758 0.97652 1.94654 1.70714 1.19821 1.56610 1.94413 0.96064 1.93639 1.49835 0.87027 0.86669 0.88706 0.77531 0.86960 0.90849 0.79153 0.91548 0.90761 0.87142 0.82456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.65 71.24 0.62 -0.58 16 2 C 0.03 0.49 5.89 -19.81 -0.12 0.38 16 3 C -0.10 -1.47 9.44 22.26 0.21 -1.26 16 4 C 0.05 1.23 6.34 22.60 0.14 1.37 16 5 Cl -0.01 -0.27 26.42 -2.72 -0.07 -0.34 16 6 C -0.14 -4.01 5.84 -20.07 -0.12 -4.13 16 7 C 0.58 20.63 7.67 86.76 0.67 21.30 16 8 O -0.55 -21.59 15.42 -3.89 -0.06 -21.65 16 9 N -0.63 -23.59 3.68 -861.80 -3.17 -26.76 16 10 C 0.06 2.37 5.14 83.26 0.43 2.80 16 11 C 0.19 8.14 1.10 -11.12 -0.01 8.12 16 12 O -0.56 -24.87 13.33 -148.98 -1.99 -26.85 16 13 C -0.54 -27.43 9.28 25.60 0.24 -27.20 16 14 H 0.07 3.64 8.06 -2.91 -0.02 3.61 16 15 C 0.04 1.86 5.47 84.66 0.46 2.32 16 16 N -0.92 -51.49 13.96 21.45 0.30 -51.19 16 17 Si 0.91 38.21 24.42 68.60 1.68 39.88 16 18 H -0.25 -10.08 7.06 99.48 0.70 -9.38 16 19 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.24 -9.36 5.50 99.48 0.55 -8.81 16 21 C 0.13 5.00 8.03 83.18 0.67 5.66 16 22 C -0.02 -0.46 8.22 22.52 0.19 -0.28 16 23 C -0.07 -1.58 6.82 36.34 0.25 -1.33 16 24 N 0.03 0.87 4.45 -46.55 -0.21 0.66 16 25 O -0.22 -6.97 18.46 18.89 0.35 -6.62 16 26 O -0.11 -2.58 15.34 18.87 0.29 -2.29 16 27 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.11 0.29 8.03 -2.39 -0.02 0.27 16 29 H 0.09 1.11 5.88 -2.39 -0.01 1.10 16 30 H 0.21 1.12 8.05 -2.91 -0.02 1.09 16 31 H 0.11 4.00 8.10 -2.39 -0.02 3.98 16 32 H 0.07 2.66 6.10 -2.39 -0.01 2.65 16 33 H 0.36 15.10 3.16 -74.06 -0.23 14.86 16 34 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.11 4.03 8.10 -2.39 -0.02 4.01 16 37 H 0.16 4.63 5.08 -2.91 -0.01 4.61 16 Total: -1.00 -65.26 328.17 1.50 -63.76 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.76 Total: 24.21 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 3.62 Total: 7.19 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: -3.08 Total: -77.29 kcal Atomic # 8 Polarization: -56.00 SS G_CDS: -1.41 Total: -57.41 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 1.68 Total: 39.88 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.07 Total: -0.34 kcal Total: -65.26 1.50 -63.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331136310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.762 kcal (2) G-P(sol) polarization free energy of solvation -65.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds