Wall clock time and date at job start Sat Apr 11 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86794 * 119.99849 * 2 1 4 4 H 1.48500 * 109.47252 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47404 * 300.00330 * 3 2 1 6 6 H 1.48501 * 109.47288 * 60.00555 * 3 2 1 7 7 C 1.38649 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99963 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.35757 * 116.99905 * 174.95506 * 9 7 2 11 11 C 1.38936 * 120.04140 * 185.61262 * 10 9 7 12 12 C 1.38111 * 120.03919 * 180.02562 * 11 10 9 13 13 C 1.38227 * 120.12414 * 359.97438 * 12 11 10 14 14 C 1.38781 * 120.08451 * 359.97438 * 13 12 11 15 15 O 1.35920 * 120.01909 * 179.97438 * 14 13 12 16 16 C 1.34264 * 116.99801 * 255.27624 * 15 14 13 17 17 O 1.20828 * 119.99913 * 355.01575 * 16 15 14 18 18 C 1.50701 * 120.00023 * 175.01848 * 16 15 14 19 19 C 1.53004 * 109.47113 * 180.02562 * 18 16 15 20 20 H 1.09001 * 110.04807 * 53.59717 * 19 18 16 21 21 C 1.54369 * 110.26464 * 292.03215 * 19 18 16 22 22 C 1.54165 * 108.77471 * 193.60599 * 21 19 18 23 23 S 1.82919 * 105.08698 * 27.91557 * 22 21 19 24 24 O 1.42102 * 109.35082 * 244.47733 * 23 22 21 25 25 O 1.42092 * 109.47498 * 111.31051 * 23 22 21 26 26 C 1.55049 * 110.02692 * 174.99743 * 19 18 16 27 27 C 1.38615 * 119.95737 * 0.24109 * 14 13 12 28 28 H 0.96996 * 119.99914 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.97638 * 0.02562 * 11 10 9 30 30 H 1.08003 * 119.93291 * 179.97438 * 12 11 10 31 31 H 1.08002 * 119.95671 * 179.97438 * 13 12 11 32 32 H 1.09001 * 109.47448 * 60.00156 * 18 16 15 33 33 H 1.09005 * 109.46768 * 300.00035 * 18 16 15 34 34 H 1.09001 * 109.60294 * 73.73007 * 21 19 18 35 35 H 1.09005 * 109.50289 * 313.41895 * 21 19 18 36 36 H 1.09000 * 110.31583 * 269.00999 * 22 21 19 37 37 H 1.09000 * 110.31984 * 146.81774 * 22 21 19 38 38 H 1.08996 * 110.79025 * 43.45167 * 26 19 18 39 39 H 1.09007 * 110.78744 * 280.18749 * 26 19 18 40 40 H 1.08003 * 120.06287 * 179.74830 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8909 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0016 10 6 2.0700 -3.5046 -0.1084 11 6 1.4358 -4.7344 -0.2334 12 6 2.1839 -5.8903 -0.3416 13 6 3.5647 -5.8269 -0.3263 14 6 4.2035 -4.6011 -0.2028 15 8 5.5613 -4.5404 -0.1875 16 6 6.1483 -4.3227 1.0002 17 8 5.4721 -4.1012 1.9768 18 6 7.6505 -4.3545 1.1154 19 6 8.0569 -4.0783 2.5644 20 1 7.5412 -4.7659 3.2347 21 6 7.7237 -2.6197 2.9443 22 6 8.4426 -2.2740 4.2635 23 16 9.9258 -3.3442 4.2921 24 8 9.8285 -4.2547 5.3788 25 8 11.0903 -2.5441 4.1413 26 6 9.5915 -4.2320 2.7239 27 6 3.4560 -3.4393 -0.0895 28 1 -0.4850 0.8400 0.0004 29 1 0.3571 -4.7865 -0.2459 30 1 1.6891 -6.8454 -0.4382 31 1 4.1471 -6.7325 -0.4107 32 1 8.0810 -3.5928 0.4654 33 1 8.0171 -5.3366 0.8165 34 1 6.6468 -2.5126 3.0747 35 1 8.0655 -1.9507 2.1544 36 1 7.7990 -2.4961 5.1147 37 1 8.7336 -1.2236 4.2720 38 1 10.1161 -3.7605 1.8930 39 1 9.8684 -5.2830 2.8077 40 1 3.9514 -2.4848 0.0108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348649978.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:04 Heat of formation + Delta-G solvation = -147.717136 kcal Electronic energy + Delta-G solvation = -26861.756096 eV Core-core repulsion = 22735.349178 eV Total energy + Delta-G solvation = -4126.406918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.090 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.12669 -39.03977 -37.95456 -37.34750 -36.59895 -36.28467 -35.77012 -32.38597 -31.65647 -29.97803 -29.14947 -28.66248 -25.54809 -24.94320 -23.15132 -21.79399 -21.22113 -20.36061 -19.20232 -18.38769 -18.06914 -17.49779 -17.02839 -16.66914 -16.28357 -15.95713 -15.82895 -15.22343 -14.85855 -14.72141 -14.35237 -14.29361 -14.09780 -13.74109 -13.59648 -13.14485 -13.09740 -12.65257 -12.54098 -12.46913 -12.35836 -12.20832 -12.02430 -11.81516 -11.59651 -11.40004 -11.27890 -11.14729 -11.02272 -10.94735 -10.77891 -10.54585 -10.39479 -10.33878 -9.60534 -8.95344 -8.25949 -7.43718 -6.55586 -4.15203 -0.30829 1.65843 2.12348 2.14868 2.17742 2.89471 3.05912 3.06636 3.12342 3.24916 3.63218 3.86933 3.87392 4.12706 4.18599 4.38452 4.41229 4.49719 4.66229 4.84253 4.92716 4.97412 5.07896 5.14033 5.19071 5.25094 5.39429 5.51462 5.63305 5.68656 5.77927 5.91983 6.07655 6.21479 6.47296 6.79577 6.90133 7.00434 7.05002 7.24744 7.49157 7.87583 8.01326 8.89388 9.55441 10.61920 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.011348 B = 0.003084 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.822978 B = 9077.453255 C =10985.730517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.394 4.394 8 H 0.091 0.909 9 O -0.170 6.170 10 C 0.164 3.836 11 C -0.186 4.186 12 C -0.065 4.065 13 C -0.212 4.212 14 C 0.119 3.881 15 O -0.295 6.295 16 C 0.450 3.550 17 O -0.481 6.481 18 C -0.098 4.098 19 C -0.078 4.078 20 H 0.109 0.891 21 C -0.122 4.122 22 C -0.585 4.585 23 S 2.388 3.612 24 O -0.937 6.937 25 O -0.941 6.941 26 C -0.588 4.588 27 C -0.230 4.230 28 H 0.271 0.729 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.490 -7.770 2.665 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.470 4.470 8 H 0.109 0.891 9 O -0.073 6.073 10 C 0.109 3.891 11 C -0.205 4.205 12 C -0.083 4.083 13 C -0.231 4.231 14 C 0.078 3.922 15 O -0.211 6.211 16 C 0.293 3.707 17 O -0.366 6.366 18 C -0.136 4.136 19 C -0.098 4.098 20 H 0.127 0.873 21 C -0.161 4.161 22 C -0.715 4.715 23 S 2.572 3.428 24 O -0.934 6.934 25 O -0.938 6.938 26 C -0.717 4.717 27 C -0.250 4.250 28 H 0.081 0.919 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.104 0.896 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 17.585 -7.516 3.668 19.472 hybrid contribution -0.236 0.939 -0.608 1.143 sum 17.349 -6.577 3.060 18.805 Atomic orbital electron populations 1.70041 1.05962 1.27793 1.45443 1.25298 0.95869 0.98862 0.96302 0.85641 0.79097 0.80237 0.78421 1.19136 1.19951 1.19976 1.21355 0.91760 0.80711 1.53126 0.89128 1.84003 1.34022 1.11411 1.77838 1.19124 0.89309 0.88415 0.92248 1.20350 1.00077 0.90210 1.09856 1.20493 0.92577 0.97230 0.98011 1.20495 0.94682 0.95272 1.12696 1.18204 0.78693 0.93562 1.01695 1.84505 1.20806 1.82044 1.33710 1.23900 0.91795 0.73699 0.81316 1.90724 1.65706 1.42507 1.37627 1.21313 0.88301 1.06586 0.97393 1.21788 0.91461 0.98769 0.97783 0.87324 1.22246 1.04941 0.94702 0.94180 1.30451 1.19028 1.15450 1.06612 1.09069 0.77798 0.77857 0.78050 1.93630 1.87176 1.62901 1.49730 1.93615 1.44930 1.68671 1.86589 1.30758 1.03694 1.14936 1.22326 1.21181 0.94244 0.98131 1.11429 0.91878 0.85844 0.85956 0.86761 0.86797 0.86617 0.87022 0.89565 0.84264 0.84235 0.83974 0.84056 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.65 13.67 55.48 0.76 -23.89 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 20.12 29.55 -169.99 -5.02 15.10 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.39 -10.84 9.49 30.88 0.29 -10.55 16 8 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 9 O -0.17 -4.76 9.76 0.02 0.00 -4.76 16 10 C 0.16 3.91 6.65 -39.13 -0.26 3.65 16 11 C -0.19 -3.79 9.99 -39.37 -0.39 -4.18 16 12 C -0.06 -1.11 10.03 -39.63 -0.40 -1.51 16 13 C -0.21 -3.67 9.98 -39.38 -0.39 -4.06 16 14 C 0.12 2.27 5.19 -39.24 -0.20 2.06 16 15 O -0.30 -4.72 10.03 -23.61 -0.24 -4.96 16 16 C 0.45 6.16 7.61 36.01 0.27 6.43 16 17 O -0.48 -8.15 13.74 -18.75 -0.26 -8.41 16 18 C -0.10 -0.75 5.31 -27.88 -0.15 -0.89 16 19 C -0.08 -0.56 2.23 -88.82 -0.20 -0.76 16 20 H 0.11 0.83 7.93 -51.93 -0.41 0.42 16 21 C -0.12 -0.98 5.37 -25.40 -0.14 -1.12 16 22 C -0.59 -3.92 7.26 37.77 0.27 -3.64 16 23 S 2.39 17.91 6.10 -107.50 -0.66 17.25 16 24 O -0.94 -10.58 18.15 -57.73 -1.05 -11.63 16 25 O -0.94 -10.21 18.15 -57.73 -1.05 -11.26 16 26 C -0.59 -2.83 6.65 38.24 0.25 -2.58 16 27 C -0.23 -5.08 8.57 -39.25 -0.34 -5.41 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 30 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 31 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.11 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.11 1.20 6.64 -51.93 -0.35 0.85 16 35 H 0.09 0.55 8.06 -51.93 -0.42 0.13 16 36 H 0.14 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.14 0.41 8.10 -51.93 -0.42 -0.01 16 39 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.13 2.97 5.64 -52.48 -0.30 2.67 16 LS Contribution 355.01 15.07 5.35 5.35 Total: -1.00 -37.63 355.01 -8.31 -45.94 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.68 Total: 2.81 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -1.47 Total: -21.54 kcal Atomic # 7 Polarization: -24.65 SS G_CDS: 0.76 Total: -23.89 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -2.59 Total: -41.02 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 17.91 SS G_CDS: -0.66 Total: 17.25 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.63 -8.31 -45.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348649978.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.781 kcal (2) G-P(sol) polarization free energy of solvation -37.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds