Wall clock time and date at job start Sat Apr 11 2020 05:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86794 * 119.99849 * 2 1 4 4 H 1.48500 * 109.47252 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47404 * 300.00330 * 3 2 1 6 6 H 1.48501 * 109.47288 * 60.00555 * 3 2 1 7 7 C 1.38649 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99963 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.35757 * 116.99905 * 174.95506 * 9 7 2 11 11 C 1.38936 * 120.04140 * 185.61262 * 10 9 7 12 12 C 1.38111 * 120.03919 * 180.02562 * 11 10 9 13 13 C 1.38227 * 120.12414 * 359.97438 * 12 11 10 14 14 C 1.38781 * 120.08451 * 359.97438 * 13 12 11 15 15 O 1.35920 * 120.01909 * 179.97438 * 14 13 12 16 16 C 1.34264 * 116.99801 * 255.27624 * 15 14 13 17 17 O 1.20828 * 119.99913 * 355.01575 * 16 15 14 18 18 C 1.50701 * 120.00023 * 175.01848 * 16 15 14 19 19 C 1.53004 * 109.47113 * 180.02562 * 18 16 15 20 20 H 1.09001 * 110.04807 * 53.59717 * 19 18 16 21 21 C 1.54369 * 110.26464 * 292.03215 * 19 18 16 22 22 C 1.54165 * 108.77471 * 193.60599 * 21 19 18 23 23 S 1.82919 * 105.08698 * 27.91557 * 22 21 19 24 24 O 1.42102 * 109.35082 * 244.47733 * 23 22 21 25 25 O 1.42092 * 109.47498 * 111.31051 * 23 22 21 26 26 C 1.55049 * 110.02692 * 174.99743 * 19 18 16 27 27 C 1.38615 * 119.95737 * 0.24109 * 14 13 12 28 28 H 0.96996 * 119.99914 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.97638 * 0.02562 * 11 10 9 30 30 H 1.08003 * 119.93291 * 179.97438 * 12 11 10 31 31 H 1.08002 * 119.95671 * 179.97438 * 13 12 11 32 32 H 1.09001 * 109.47448 * 60.00156 * 18 16 15 33 33 H 1.09005 * 109.46768 * 300.00035 * 18 16 15 34 34 H 1.09001 * 109.60294 * 73.73007 * 21 19 18 35 35 H 1.09005 * 109.50289 * 313.41895 * 21 19 18 36 36 H 1.09000 * 110.31583 * 269.00999 * 22 21 19 37 37 H 1.09000 * 110.31984 * 146.81774 * 22 21 19 38 38 H 1.08996 * 110.79025 * 43.45167 * 26 19 18 39 39 H 1.09007 * 110.78744 * 280.18749 * 26 19 18 40 40 H 1.08003 * 120.06287 * 179.74830 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8909 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0016 10 6 2.0700 -3.5046 -0.1084 11 6 1.4358 -4.7344 -0.2334 12 6 2.1839 -5.8903 -0.3416 13 6 3.5647 -5.8269 -0.3263 14 6 4.2035 -4.6011 -0.2028 15 8 5.5613 -4.5404 -0.1875 16 6 6.1483 -4.3227 1.0002 17 8 5.4721 -4.1012 1.9768 18 6 7.6505 -4.3545 1.1154 19 6 8.0569 -4.0783 2.5644 20 1 7.5412 -4.7659 3.2347 21 6 7.7237 -2.6197 2.9443 22 6 8.4426 -2.2740 4.2635 23 16 9.9258 -3.3442 4.2921 24 8 9.8285 -4.2547 5.3788 25 8 11.0903 -2.5441 4.1413 26 6 9.5915 -4.2320 2.7239 27 6 3.4560 -3.4393 -0.0895 28 1 -0.4850 0.8400 0.0004 29 1 0.3571 -4.7865 -0.2459 30 1 1.6891 -6.8454 -0.4382 31 1 4.1471 -6.7325 -0.4107 32 1 8.0810 -3.5928 0.4654 33 1 8.0171 -5.3366 0.8165 34 1 6.6468 -2.5126 3.0747 35 1 8.0655 -1.9507 2.1544 36 1 7.7990 -2.4961 5.1147 37 1 8.7336 -1.2236 4.2720 38 1 10.1161 -3.7605 1.8930 39 1 9.8684 -5.2830 2.8077 40 1 3.9514 -2.4848 0.0108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348649978.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:03 Heat of formation + Delta-G solvation = -175.062661 kcal Electronic energy + Delta-G solvation = -26862.941887 eV Core-core repulsion = 22735.349178 eV Total energy + Delta-G solvation = -4127.592709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.090 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.36226 -40.62828 -39.09743 -38.08619 -37.71941 -37.18005 -36.98402 -34.34840 -32.37737 -31.33823 -30.66488 -29.50184 -27.46303 -25.71954 -24.29516 -23.39216 -22.31449 -21.26414 -20.11745 -19.86070 -19.50618 -18.55363 -17.84212 -17.70653 -17.46837 -17.00569 -16.87272 -16.62400 -16.10928 -16.01321 -15.64266 -15.48671 -15.11758 -14.86958 -14.75394 -14.54090 -14.38286 -13.77228 -13.52690 -13.22748 -13.16327 -13.11335 -13.09109 -12.98466 -12.79344 -12.76713 -12.51963 -12.41212 -12.16463 -11.94919 -11.81950 -11.73378 -11.65460 -11.46742 -11.14701 -10.86971 -9.79731 -9.15738 -8.53847 -6.23198 -0.88794 0.16388 0.55189 1.10416 1.30343 1.38397 1.48445 1.55179 1.82920 2.11902 2.64301 2.73735 3.04674 3.06318 3.25839 3.39417 3.53833 3.60366 3.76741 3.92467 3.98361 4.00528 4.17901 4.24533 4.32231 4.40802 4.54067 4.64070 4.70278 4.73608 4.83960 4.88193 4.94703 5.01383 5.08119 5.12999 5.37825 5.45549 5.52518 5.57992 5.93408 6.01624 6.78197 6.90178 7.66283 8.68897 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.011348 B = 0.003084 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.822978 B = 9077.453255 C =10985.730517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.017 4.017 3 Si 1.016 2.984 4 H -0.254 1.254 5 H -0.263 1.263 6 H -0.267 1.267 7 C -0.416 4.416 8 H 0.094 0.906 9 O -0.223 6.223 10 C 0.126 3.874 11 C -0.198 4.198 12 C -0.049 4.049 13 C -0.192 4.192 14 C 0.117 3.883 15 O -0.294 6.294 16 C 0.445 3.555 17 O -0.521 6.521 18 C -0.089 4.089 19 C -0.083 4.083 20 H 0.100 0.900 21 C -0.130 4.130 22 C -0.581 4.581 23 S 2.396 3.604 24 O -0.982 6.982 25 O -0.977 6.977 26 C -0.556 4.556 27 C -0.247 4.247 28 H 0.275 0.725 29 H 0.127 0.873 30 H 0.173 0.827 31 H 0.159 0.841 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.151 0.849 38 H 0.175 0.825 39 H 0.168 0.832 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.553 -9.922 1.362 22.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.216 4.216 3 Si 0.835 3.165 4 H -0.177 1.177 5 H -0.188 1.188 6 H -0.192 1.192 7 C -0.492 4.492 8 H 0.112 0.888 9 O -0.129 6.129 10 C 0.075 3.925 11 C -0.217 4.217 12 C -0.067 4.067 13 C -0.211 4.211 14 C 0.076 3.924 15 O -0.210 6.210 16 C 0.290 3.710 17 O -0.407 6.407 18 C -0.126 4.126 19 C -0.103 4.103 20 H 0.119 0.881 21 C -0.168 4.168 22 C -0.712 4.712 23 S 2.585 3.415 24 O -0.979 6.979 25 O -0.974 6.974 26 C -0.688 4.688 27 C -0.267 4.267 28 H 0.084 0.916 29 H 0.145 0.855 30 H 0.190 0.810 31 H 0.176 0.824 32 H 0.163 0.837 33 H 0.173 0.827 34 H 0.096 0.904 35 H 0.123 0.877 36 H 0.154 0.846 37 H 0.170 0.830 38 H 0.193 0.807 39 H 0.186 0.814 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 20.703 -9.712 2.394 22.993 hybrid contribution -1.091 1.263 -0.235 1.685 sum 19.612 -8.450 2.159 21.464 Atomic orbital electron populations 1.70169 1.07899 1.28952 1.48203 1.26551 0.96873 1.02570 0.95570 0.84582 0.78143 0.74911 0.78899 1.17749 1.18798 1.19155 1.21751 0.92186 0.81483 1.53787 0.88834 1.83963 1.35478 1.12469 1.81024 1.19721 0.90418 0.88582 0.93786 1.20701 1.00854 0.90221 1.09961 1.21063 0.92654 0.97860 0.95118 1.21106 0.95125 0.95979 1.08881 1.18361 0.80362 0.93164 1.00546 1.84534 1.18795 1.82341 1.35304 1.25226 0.93974 0.71955 0.79805 1.90734 1.67023 1.44257 1.38694 1.21605 0.83200 1.09830 0.97978 1.21811 0.93023 0.97804 0.97651 0.88142 1.22303 1.02996 0.96220 0.95331 1.30398 1.18413 1.16174 1.06182 1.08607 0.77024 0.77254 0.78630 1.93572 1.87636 1.63875 1.52800 1.93567 1.46780 1.69690 1.87368 1.30585 1.01756 1.16217 1.20227 1.21177 0.93928 0.98849 1.12725 0.91594 0.85506 0.80965 0.82386 0.83717 0.82733 0.90367 0.87667 0.84562 0.83041 0.80693 0.81379 0.86960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.59 13.67 21.61 0.30 -55.29 16 2 C -0.02 -0.98 5.49 84.83 0.47 -0.52 16 3 Si 1.02 42.60 29.55 68.60 2.03 44.63 16 4 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 5 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 6 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.42 -24.42 9.49 67.92 0.64 -23.78 16 8 H 0.09 5.17 5.20 -2.91 -0.02 5.15 16 9 O -0.22 -13.42 9.76 -22.84 -0.22 -13.64 16 10 C 0.13 6.29 6.65 22.56 0.15 6.44 16 11 C -0.20 -8.10 9.99 22.41 0.22 -7.88 16 12 C -0.05 -1.52 10.03 22.24 0.22 -1.30 16 13 C -0.19 -5.90 9.98 22.40 0.22 -5.68 16 14 C 0.12 4.27 5.19 22.49 0.12 4.39 16 15 O -0.29 -8.63 10.03 4.58 0.05 -8.59 16 16 C 0.45 11.11 7.61 71.24 0.54 11.65 16 17 O -0.52 -17.41 13.74 21.96 0.30 -17.11 16 18 C -0.09 -0.94 5.31 29.85 0.16 -0.78 16 19 C -0.08 -0.92 2.23 -9.63 -0.02 -0.94 16 20 H 0.10 1.32 7.93 -2.39 -0.02 1.30 16 21 C -0.13 -1.89 5.37 31.45 0.17 -1.72 16 22 C -0.58 -7.37 7.26 72.38 0.53 -6.84 16 23 S 2.40 32.53 6.10 -56.49 -0.34 32.19 16 24 O -0.98 -21.79 18.15 -127.47 -2.31 -24.10 16 25 O -0.98 -20.04 18.15 -127.47 -2.31 -22.36 16 26 C -0.56 -2.89 6.65 72.68 0.48 -2.40 16 27 C -0.25 -11.22 8.57 22.49 0.19 -11.03 16 28 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 29 H 0.13 4.97 8.06 -2.91 -0.02 4.95 16 30 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 31 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 32 H 0.15 0.77 8.08 -2.39 -0.02 0.75 16 33 H 0.16 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.08 1.72 6.64 -2.39 -0.02 1.71 16 35 H 0.10 1.09 8.06 -2.38 -0.02 1.07 16 36 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.15 1.51 8.14 -2.39 -0.02 1.50 16 38 H 0.18 -0.08 8.10 -2.39 -0.02 -0.10 16 39 H 0.17 0.16 8.14 -2.38 -0.02 0.14 16 40 H 0.11 5.39 5.64 -2.91 -0.02 5.38 16 Total: -1.00 -90.53 355.01 2.65 -87.88 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 1.08 Total: 16.80 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 4.10 Total: -40.40 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.30 Total: -55.29 kcal Atomic # 8 Polarization: -81.30 SS G_CDS: -4.50 Total: -85.80 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 32.53 SS G_CDS: -0.34 Total: 32.19 kcal Total: -90.53 2.65 -87.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348649978.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.183 kcal (2) G-P(sol) polarization free energy of solvation -90.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds