Wall clock time and date at job start Sat Apr 11 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 119.99718 * 2 1 4 4 O 1.21704 * 120.00123 * 186.11061 * 3 2 1 5 5 C 1.46581 * 120.00320 * 6.10667 * 3 2 1 6 6 C 1.36644 * 125.46459 * 186.84443 * 5 3 2 7 7 C 1.37471 * 113.30240 * 180.02562 * 6 5 3 8 8 C 1.33817 * 115.10116 * 359.97438 * 7 6 5 9 9 S 1.70619 * 110.95169 * 359.72358 * 8 7 6 10 10 C 1.46497 * 120.00085 * 179.97438 * 2 1 3 11 11 C 1.53491 * 114.20664 * 299.99689 * 10 2 1 12 12 N 1.47069 * 87.98604 * 87.71832 * 11 10 2 13 13 C 1.34779 * 136.06238 * 207.08481 * 12 11 10 14 14 O 1.21280 * 119.99683 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00131 * 179.97438 * 13 12 11 16 16 S 1.81004 * 109.47195 * 179.97438 * 15 13 12 17 17 C 1.76196 * 99.99962 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00075 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99834 * 179.72392 * 17 16 15 20 20 N 1.31630 * 119.99930 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99863 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47128 * 89.99818 * 21 19 17 23 23 H 1.48500 * 109.46964 * 209.99667 * 21 19 17 24 24 H 1.48495 * 109.47172 * 330.00076 * 21 19 17 25 25 C 1.47076 * 87.88289 * 27.34347 * 12 11 10 26 26 H 1.08997 * 109.47000 * 275.91744 * 1 2 3 27 27 H 1.09001 * 109.47429 * 35.91667 * 1 2 3 28 28 H 1.09001 * 109.46918 * 155.91654 * 1 2 3 29 29 H 1.08003 * 123.34717 * 359.97438 * 6 5 3 30 30 H 1.08000 * 122.44941 * 180.02562 * 7 6 5 31 31 H 1.07996 * 124.52340 * 180.02562 * 8 7 6 32 32 H 1.09001 * 113.27985 * 166.93300 * 10 2 1 33 33 H 1.09000 * 113.46913 * 332.93783 * 11 10 2 34 34 H 1.08999 * 113.46752 * 202.49409 * 11 10 2 35 35 H 1.09005 * 109.47413 * 60.00345 * 15 13 12 36 36 H 1.08995 * 109.47462 * 300.00276 * 15 13 12 37 37 H 0.97001 * 120.00041 * 180.02562 * 20 19 17 38 38 H 1.08991 * 113.47036 * 87.43672 * 25 12 11 39 39 H 1.09000 * 113.46723 * 217.88135 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3507 1.1703 -0.1122 5 6 1.4122 2.4331 0.1350 6 6 1.9612 3.6788 0.0174 7 6 1.0500 4.6933 0.1914 8 6 -0.2025 4.2945 0.4423 9 16 -0.3073 2.5917 0.4665 10 6 2.1975 -1.2687 0.0006 11 6 1.9061 -2.1631 1.2134 12 7 0.7773 -2.7291 0.4594 13 6 -0.4051 -3.2995 0.7645 14 8 -0.7317 -3.4345 1.9247 15 6 -1.3217 -3.7684 -0.3358 16 16 -2.8178 -4.4842 0.3892 17 6 -3.6834 -4.9346 -1.0779 18 1 -3.2445 -4.7396 -2.0452 19 6 -4.9266 -5.5457 -0.9902 20 7 -5.5731 -5.8827 -2.0862 21 14 -5.6822 -5.8900 0.6832 22 1 -6.5011 -4.7254 1.1055 23 1 -6.5438 -7.0964 0.5984 24 1 -4.6022 -6.1216 1.6757 25 6 1.5095 -2.4047 -0.7742 26 1 -0.3633 0.1059 1.0222 27 1 -0.3634 0.8323 -0.6028 28 1 -0.3633 -0.9382 -0.4194 29 1 3.0072 3.8494 -0.1907 30 1 1.3247 5.7360 0.1292 31 1 -1.0366 4.9615 0.6029 32 1 3.2576 -1.1542 -0.2259 33 1 1.6007 -1.6069 2.0996 34 1 2.6958 -2.8855 1.4198 35 1 -0.8127 -4.5226 -0.9361 36 1 -1.5926 -2.9230 -0.9681 37 1 -6.4420 -6.3094 -2.0249 38 1 2.1948 -3.1905 -1.0917 39 1 0.8663 -2.0541 -1.5813 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358717455.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:28 Heat of formation + Delta-G solvation = 3.266081 kcal Electronic energy + Delta-G solvation = -24282.817775 eV Core-core repulsion = 20638.003603 eV Total energy + Delta-G solvation = -3644.814172 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.14650 -40.52122 -39.07415 -38.23694 -35.91679 -34.67121 -32.27436 -30.87873 -29.36108 -28.13923 -27.84807 -26.92809 -26.04064 -23.58833 -21.68279 -20.23573 -20.11402 -19.63815 -19.07760 -18.12401 -17.80619 -17.19872 -16.97035 -16.84879 -16.63436 -16.53543 -16.08417 -15.69261 -15.07638 -14.90682 -14.61357 -14.38896 -14.33998 -14.18100 -13.76276 -13.61730 -13.53577 -13.37086 -13.36041 -13.05129 -13.00782 -12.97424 -12.63257 -12.15845 -11.87116 -11.54919 -11.30334 -11.16838 -10.98187 -10.54291 -10.10650 -9.86912 -9.76254 -9.44239 -9.00719 -8.51421 -6.22549 -0.50256 0.50442 0.93503 1.00096 1.31462 1.36413 1.41091 1.49000 1.52920 1.66531 1.93375 2.06151 2.24753 2.66273 2.87112 3.19180 3.32097 3.50427 3.80143 3.90515 4.09519 4.15106 4.25893 4.27152 4.36428 4.39281 4.42706 4.53813 4.55709 4.61222 4.62717 4.70692 4.81819 5.00059 5.20729 5.33604 5.39004 5.70962 6.05949 6.11906 6.51976 6.86349 6.93908 7.01848 8.60882 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.015531 B = 0.002823 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.435466 B = 9914.435386 C =10985.920980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.590 5.590 3 C 0.596 3.404 4 O -0.560 6.560 5 C -0.307 4.307 6 C -0.052 4.052 7 C -0.161 4.161 8 C -0.247 4.247 9 S 0.241 5.759 10 C 0.113 3.887 11 C 0.094 3.906 12 N -0.649 5.649 13 C 0.564 3.436 14 O -0.562 6.562 15 C -0.102 4.102 16 S -0.173 6.173 17 C -0.526 4.526 18 H 0.063 0.937 19 C 0.047 3.953 20 N -0.917 5.917 21 Si 0.912 3.088 22 H -0.261 1.261 23 H -0.261 1.261 24 H -0.237 1.237 25 C 0.094 3.906 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.153 0.847 30 H 0.164 0.836 31 H 0.189 0.811 32 H 0.148 0.852 33 H 0.066 0.934 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.277 0.723 38 H 0.137 0.863 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.710 19.657 2.724 25.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.320 5.320 3 C 0.387 3.613 4 O -0.440 6.440 5 C -0.427 4.427 6 C -0.087 4.087 7 C -0.190 4.190 8 C -0.384 4.384 9 S 0.510 5.490 10 C 0.008 3.992 11 C -0.030 4.030 12 N -0.386 5.386 13 C 0.353 3.647 14 O -0.440 6.440 15 C -0.253 4.253 16 S 0.054 5.946 17 C -0.674 4.674 18 H 0.081 0.919 19 C -0.159 4.159 20 N -0.555 5.555 21 Si 0.734 3.266 22 H -0.185 1.185 23 H -0.185 1.185 24 H -0.161 1.161 25 C -0.028 4.028 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.171 0.829 30 H 0.182 0.818 31 H 0.206 0.794 32 H 0.165 0.835 33 H 0.085 0.915 34 H 0.142 0.858 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.086 0.914 38 H 0.154 0.846 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.268 18.284 4.570 24.255 hybrid contribution 0.576 0.826 -1.249 1.605 sum 15.845 19.110 3.321 25.045 Atomic orbital electron populations 1.22115 0.78836 1.04336 1.03118 1.47272 1.07021 1.04995 1.72743 1.17166 0.86198 0.82598 0.75385 1.90792 1.14192 1.87248 1.51806 1.24564 0.99658 0.97294 1.21176 1.20986 1.01825 0.90035 0.95846 1.20241 0.91917 1.01778 1.05094 1.26245 1.02881 1.03451 1.05841 1.83862 1.02265 0.98840 1.64073 1.22396 0.98515 0.81757 0.96524 1.23664 0.87546 0.95000 0.96743 1.49718 1.15759 1.60295 1.12827 1.19468 0.80649 0.75751 0.88822 1.90709 1.74722 1.56306 1.22248 1.23187 0.97149 1.04715 1.00246 1.84758 1.18148 1.78361 1.13337 1.22428 1.06672 1.45836 0.92467 0.91862 1.25536 0.96297 0.93646 1.00390 1.70012 1.15250 1.40719 1.29479 0.85898 0.80611 0.79427 0.80643 1.18547 1.18524 1.16106 1.23802 0.94330 0.95980 0.88722 0.91736 0.89181 0.89050 0.82900 0.81837 0.79380 0.83460 0.91525 0.85769 0.87209 0.86982 0.91371 0.84569 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.12 8.03 127.77 1.03 2.15 16 2 N -0.59 -11.22 3.12 -826.22 -2.58 -13.79 16 3 C 0.60 13.31 7.62 86.42 0.66 13.96 16 4 O -0.56 -15.23 16.36 -4.36 -0.07 -15.30 16 5 C -0.31 -5.96 6.21 24.07 0.15 -5.81 16 6 C -0.05 -0.90 10.02 21.72 0.22 -0.68 16 7 C -0.16 -2.11 10.15 21.08 0.21 -1.90 16 8 C -0.25 -3.09 10.92 66.81 0.73 -2.36 16 9 S 0.24 3.68 17.89 -56.49 -1.01 2.67 16 10 C 0.11 1.75 4.70 45.55 0.21 1.96 16 11 C 0.09 1.68 8.24 83.18 0.69 2.36 16 12 N -0.65 -14.72 2.40 -857.79 -2.06 -16.78 16 13 C 0.56 18.71 7.49 87.65 0.66 19.37 16 14 O -0.56 -23.67 16.64 -3.03 -0.05 -23.73 16 15 C -0.10 -3.68 5.98 71.23 0.43 -3.25 16 16 S -0.17 -8.45 18.55 -56.49 -1.05 -9.50 16 17 C -0.53 -29.77 10.04 67.96 0.68 -29.09 16 18 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 19 C 0.05 2.69 5.50 84.86 0.47 3.16 16 20 N -0.92 -54.82 13.97 21.65 0.30 -54.52 16 21 Si 0.91 44.05 27.74 68.60 1.90 45.95 16 22 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.24 -11.45 6.74 99.48 0.67 -10.78 16 25 C 0.09 1.33 7.45 83.27 0.62 1.95 16 26 H 0.06 1.29 7.50 -2.39 -0.02 1.27 16 27 H 0.09 1.46 5.11 -18.00 -0.09 1.37 16 28 H 0.09 1.80 5.04 -2.39 -0.01 1.79 16 29 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 30 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 31 H 0.19 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.15 2.01 7.26 -2.39 -0.02 1.99 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 36 H 0.11 3.63 8.13 -2.40 -0.02 3.61 16 37 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 1.27 7.39 -2.39 -0.02 1.25 16 Total: -1.00 -77.17 353.48 3.11 -74.07 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.97 Total: 9.11 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 6.75 Total: 1.82 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -4.33 Total: -85.09 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -0.12 Total: -39.03 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.90 Total: 45.95 kcal Atomic # 16 Polarization: -4.77 SS G_CDS: -2.06 Total: -6.83 kcal Total: -77.17 3.11 -74.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358717455.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.334 kcal (2) G-P(sol) polarization free energy of solvation -77.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds