Wall clock time and date at job start Sat Apr 11 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47229 * 2 1 4 4 C 1.52998 * 109.47309 * 119.99858 * 2 1 3 5 5 C 1.47201 * 109.47344 * 185.00216 * 4 2 1 6 6 N 3.43556 * 154.82579 * 111.56554 * 2 1 3 7 7 N 1.46505 * 109.47130 * 239.99932 * 2 1 3 8 8 C 1.34777 * 119.99724 * 85.00158 * 7 2 1 9 9 O 1.21573 * 120.00277 * 359.97438 * 8 7 2 10 10 C 1.47687 * 119.99586 * 179.72294 * 8 7 2 11 11 C 1.39658 * 120.16913 * 0.02562 * 10 8 7 12 12 C 1.37855 * 119.88042 * 179.71748 * 11 10 8 13 13 S 1.76202 * 119.89583 * 180.27396 * 12 11 10 14 14 O 1.42104 * 106.39566 * 23.81601 * 13 12 11 15 15 O 1.42101 * 106.40496 * 156.73849 * 13 12 11 16 16 C 1.76203 * 107.21676 * 270.28143 * 13 12 11 17 17 H 1.07996 * 119.99990 * 359.97438 * 16 13 12 18 18 C 1.37871 * 119.99845 * 179.97438 * 16 13 12 19 19 N 1.31517 * 120.00128 * 179.97438 * 18 16 13 20 20 Si 1.86802 * 120.00124 * 0.02562 * 18 16 13 21 21 H 1.48493 * 109.47535 * 89.99439 * 20 18 16 22 22 H 1.48504 * 109.47197 * 209.99846 * 20 18 16 23 23 H 1.48504 * 109.47045 * 329.99473 * 20 18 16 24 24 C 1.38461 * 120.21482 * 0.55624 * 12 11 10 25 25 C 1.38205 * 120.34261 * 359.71716 * 24 12 11 26 26 C 1.38323 * 120.11218 * 0.02562 * 25 24 12 27 27 F 1.35105 * 120.10489 * 179.97438 * 26 25 24 28 28 H 1.08994 * 109.47099 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47061 * 300.00108 * 1 2 3 30 30 H 1.08998 * 109.47099 * 60.00104 * 1 2 3 31 31 H 1.09000 * 109.47070 * 305.00048 * 4 2 1 32 32 H 1.09001 * 109.47293 * 65.00207 * 4 2 1 33 33 H 0.96990 * 119.99784 * 264.99730 * 7 2 1 34 34 H 1.07998 * 120.06251 * 359.97438 * 11 10 8 35 35 H 0.97005 * 120.00196 * 180.02562 * 19 18 16 36 36 H 1.08001 * 119.82943 * 179.69695 * 24 12 11 37 37 H 1.08000 * 119.94379 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5070 -0.6173 1.3113 6 7 4.6392 -0.5372 1.3591 7 7 2.0183 -0.6906 -1.1962 8 6 2.1470 -0.0182 -2.3571 9 8 1.8575 1.1612 -2.4119 10 6 2.6451 -0.7130 -3.5615 11 6 2.9833 -2.0667 -3.5014 12 6 3.4421 -2.7107 -4.6306 13 16 3.8619 -4.4204 -4.5571 14 8 3.1325 -4.9660 -3.4664 15 8 3.7611 -4.9159 -5.8851 16 6 5.5650 -4.5207 -4.1164 17 1 6.1339 -3.6179 -3.9502 18 6 6.1714 -5.7518 -3.9839 19 7 7.4427 -5.8268 -3.6555 20 14 5.1876 -7.3134 -4.2721 21 1 5.2795 -7.6994 -5.7031 22 1 5.7351 -8.4062 -3.4286 23 1 3.7662 -7.0763 -3.9137 24 6 3.5796 -2.0171 -5.8210 25 6 3.2531 -0.6759 -5.8893 26 6 2.7864 -0.0172 -4.7660 27 9 2.4677 1.2940 -4.8328 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6054 -0.2617 2.1369 32 1 1.7517 -1.7715 1.2056 33 1 2.2490 -1.6317 -1.1526 34 1 2.8815 -2.6091 -2.5730 35 1 7.8694 -6.6929 -3.5626 36 1 3.9443 -2.5266 -6.7007 37 1 3.3632 -0.1410 -6.8210 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361949786.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:44 Heat of formation + Delta-G solvation = -104.575252 kcal Electronic energy + Delta-G solvation = -26913.405058 eV Core-core repulsion = 22697.701359 eV Total energy + Delta-G solvation = -4215.703699 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.073 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.98589 -40.33264 -38.54916 -37.25443 -35.87630 -35.62775 -34.64845 -33.17592 -32.66021 -30.79098 -30.73178 -28.50743 -26.56350 -24.59534 -23.22173 -22.16200 -20.82359 -19.28637 -18.46713 -17.80986 -17.54135 -17.15896 -16.83000 -16.30720 -16.17381 -15.81764 -15.20442 -14.93526 -14.72719 -14.42095 -14.26838 -14.06303 -13.67355 -13.59815 -13.58376 -13.23409 -13.18635 -12.99093 -12.70398 -12.52193 -12.33779 -12.04379 -11.92240 -11.68594 -11.53599 -11.29937 -11.21705 -10.83266 -10.76692 -10.63173 -10.09635 -9.74708 -9.46846 -9.33217 -9.28978 -9.21611 -8.93593 -6.92653 -5.51663 0.52554 0.87140 1.60713 2.57518 2.59432 2.63915 2.85120 2.99277 3.09122 3.16861 3.46553 3.69237 3.84456 3.99775 4.29982 4.38821 4.46976 4.53865 4.59060 4.72359 4.88002 4.95406 5.05028 5.12897 5.18624 5.20805 5.33878 5.37436 5.54531 5.65972 5.77931 5.89188 5.91124 5.98876 6.17949 6.35407 6.61152 7.20151 7.33513 7.41850 7.98843 8.06176 8.54575 10.18762 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.011067 B = 0.004315 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.434079 B = 6487.521964 C = 7965.835841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.147 3.853 3 H 0.099 0.901 4 C -0.035 4.035 5 C 0.193 3.807 6 N -0.418 5.418 7 N -0.728 5.728 8 C 0.571 3.429 9 O -0.526 6.526 10 C -0.204 4.204 11 C 0.038 3.962 12 C -0.650 4.650 13 S 2.559 3.441 14 O -0.983 6.983 15 O -0.983 6.983 16 C -0.998 4.998 17 H 0.125 0.875 18 C 0.154 3.846 19 N -0.815 5.815 20 Si 0.800 3.200 21 H -0.244 1.244 22 H -0.253 1.253 23 H -0.217 1.217 24 C 0.032 3.968 25 C -0.187 4.187 26 C 0.197 3.803 27 F -0.112 7.112 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.406 0.594 34 H 0.151 0.849 35 H 0.284 0.716 36 H 0.159 0.841 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.099 8.597 5.262 16.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 H 0.117 0.883 4 C -0.075 4.075 5 C -0.125 4.125 6 N -0.094 5.094 7 N -0.382 5.382 8 C 0.358 3.642 9 O -0.403 6.403 10 C -0.209 4.209 11 C 0.019 3.981 12 C -0.733 4.733 13 S 2.744 3.256 14 O -0.980 6.980 15 O -0.980 6.980 16 C -1.133 5.133 17 H 0.143 0.857 18 C -0.067 4.067 19 N -0.443 5.443 20 Si 0.620 3.380 21 H -0.168 1.168 22 H -0.177 1.177 23 H -0.139 1.139 24 C 0.014 3.986 25 C -0.206 4.206 26 C 0.176 3.824 27 F -0.090 7.090 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.145 0.855 32 H 0.136 0.864 33 H 0.242 0.758 34 H 0.169 0.831 35 H 0.094 0.906 36 H 0.177 0.823 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.059 8.939 5.203 15.887 hybrid contribution 0.037 -0.294 0.020 0.297 sum -12.022 8.645 5.223 15.702 Atomic orbital electron populations 1.22185 0.93466 1.03138 1.03417 1.20936 0.95030 0.97774 0.82136 0.88296 1.19685 0.82499 1.04958 1.00368 1.29026 0.95211 0.94166 0.94109 1.81305 1.12819 1.07755 1.07563 1.46030 1.68167 1.14575 1.09418 1.17870 0.77298 0.86266 0.82721 1.90819 1.49721 1.14919 1.84793 1.19990 1.11438 0.95479 0.94009 1.20987 0.87757 0.91538 0.97842 1.31151 1.14326 1.28753 0.99104 1.02121 0.78053 0.71126 0.74306 1.93448 1.75305 1.74785 1.54501 1.93404 1.89201 1.76444 1.38999 1.29874 1.16794 1.02329 1.64259 0.85730 1.24407 0.94612 0.98606 0.89042 1.69971 1.10195 1.27465 1.36700 0.87875 0.84158 0.84287 0.81721 1.16751 1.17716 1.13885 1.21132 0.88085 0.92505 0.96913 1.21272 1.05130 0.95902 0.98299 1.17841 0.93172 0.78098 0.93258 1.91597 1.89046 1.31626 1.96746 0.91522 0.90917 0.91252 0.85488 0.86353 0.75772 0.83122 0.90565 0.82322 0.83183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.48 37.16 0.35 -0.64 16 2 C 0.15 1.14 2.55 -67.93 -0.17 0.97 16 3 H 0.10 0.92 7.58 -51.92 -0.39 0.52 16 4 C -0.03 -0.18 5.25 -29.52 -0.16 -0.34 16 5 C 0.19 2.04 15.14 -20.76 -0.31 1.73 16 6 N -0.42 -6.21 18.54 42.15 0.78 -5.43 16 7 N -0.73 -7.89 4.73 -54.80 -0.26 -8.15 16 8 C 0.57 8.31 7.73 -12.40 -0.10 8.22 16 9 O -0.53 -8.88 15.00 5.30 0.08 -8.80 16 10 C -0.20 -3.18 5.88 -104.92 -0.62 -3.79 16 11 C 0.04 0.62 9.01 -39.19 -0.35 0.26 16 12 C -0.65 -11.80 5.80 -39.64 -0.23 -12.03 16 13 S 2.56 57.88 3.86 -107.50 -0.42 57.47 16 14 O -0.98 -23.10 15.16 -57.17 -0.87 -23.97 16 15 O -0.98 -23.53 15.96 -57.17 -0.91 -24.44 16 16 C -1.00 -25.90 10.12 30.60 0.31 -25.59 16 17 H 0.12 3.30 8.06 -52.49 -0.42 2.87 16 18 C 0.15 4.15 5.47 -17.82 -0.10 4.06 16 19 N -0.82 -22.45 13.96 55.43 0.77 -21.67 16 20 Si 0.80 19.10 26.54 -169.99 -4.51 14.59 16 21 H -0.24 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.25 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.22 -5.16 5.61 56.52 0.32 -4.84 16 24 C 0.03 0.51 9.51 -39.51 -0.38 0.14 16 25 C -0.19 -2.59 10.01 -39.56 -0.40 -2.98 16 26 C 0.20 3.03 7.29 -38.96 -0.28 2.75 16 27 F -0.11 -1.79 15.55 2.25 0.04 -1.75 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.13 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.41 3.89 6.63 -40.82 -0.27 3.62 16 34 H 0.15 2.14 5.96 -52.49 -0.31 1.83 16 35 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.16 2.27 7.60 -52.49 -0.40 1.87 16 37 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 345.28 15.07 5.20 5.20 Total: -1.00 -35.14 345.28 -6.08 -41.22 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -3.55 Total: 3.00 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: -2.43 Total: -27.27 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 1.30 Total: -35.25 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -1.70 Total: -57.21 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.51 Total: 14.59 kcal Atomic # 16 Polarization: 57.88 SS G_CDS: -0.42 Total: 57.47 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.14 -6.08 -41.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361949786.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.356 kcal (2) G-P(sol) polarization free energy of solvation -35.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds