Wall clock time and date at job start Sat Apr 11 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08991 * 109.47511 * 2 1 4 4 C 1.47198 * 109.47053 * 120.00590 * 2 1 3 5 5 N 2.60804 * 109.47078 * 120.00479 * 2 1 3 6 6 C 1.53004 * 109.47057 * 240.00005 * 2 1 3 7 7 N 1.46500 * 109.47263 * 65.00256 * 6 2 1 8 8 C 1.34775 * 120.00602 * 180.02562 * 7 6 2 9 9 O 1.21578 * 119.99311 * 359.97438 * 8 7 6 10 10 C 1.47684 * 120.00351 * 179.97438 * 8 7 6 11 11 C 1.39664 * 120.16788 * 359.97438 * 10 8 7 12 12 C 1.37853 * 119.88067 * 179.97438 * 11 10 8 13 13 S 1.76196 * 119.89327 * 179.97438 * 12 11 10 14 14 O 1.42103 * 106.39862 * 336.46326 * 13 12 11 15 15 O 1.42095 * 106.40437 * 203.54157 * 13 12 11 16 16 C 1.76199 * 107.21610 * 89.99910 * 13 12 11 17 17 H 1.08002 * 120.00405 * 0.02562 * 16 13 12 18 18 C 1.37884 * 119.99836 * 179.72181 * 16 13 12 19 19 N 1.31514 * 119.99698 * 0.28505 * 18 16 13 20 20 Si 1.86794 * 119.99837 * 180.27572 * 18 16 13 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.38466 * 120.21750 * 0.25584 * 12 11 10 25 25 C 1.38206 * 120.33825 * 359.48759 * 24 12 11 26 26 C 1.38326 * 120.11617 * 0.51074 * 25 24 12 27 27 F 1.35100 * 120.10815 * 179.72774 * 26 25 24 28 28 H 1.08992 * 109.47270 * 300.00019 * 1 2 3 29 29 H 1.09008 * 109.47216 * 59.99872 * 1 2 3 30 30 H 1.09000 * 109.47463 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47225 * 305.00398 * 6 2 1 32 32 H 1.09005 * 109.47373 * 184.99906 * 6 2 1 33 33 H 0.97005 * 119.99915 * 0.02562 * 7 6 2 34 34 H 1.07998 * 120.05677 * 0.02562 * 11 10 8 35 35 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 36 36 H 1.07998 * 119.82911 * 179.72102 * 24 12 11 37 37 H 1.08003 * 119.94364 * 180.25973 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6940 1.2018 5 7 2.3992 -1.2296 2.1294 6 6 2.0399 -0.7213 -1.2493 7 7 1.6524 0.0353 -2.4424 8 6 1.9955 -0.4135 -3.6661 9 8 2.6270 -1.4462 -3.7796 10 6 1.6043 0.3490 -4.8688 11 6 0.8784 1.5354 -4.7424 12 6 0.5168 2.2427 -5.8691 13 16 -0.3996 3.7391 -5.7100 14 8 -1.0688 3.6687 -4.4584 15 8 -1.0777 3.9275 -6.9444 16 6 0.7667 5.0532 -5.5773 17 1 1.8252 4.8406 -5.6036 18 6 0.3278 6.3538 -5.4462 19 7 -0.9612 6.6128 -5.4145 20 14 1.5642 7.7477 -5.3133 21 1 2.4111 7.7762 -6.5328 22 1 0.8422 9.0387 -5.1812 23 1 2.4221 7.5365 -4.1197 24 6 0.8664 1.7779 -7.1257 25 6 1.5892 0.6077 -7.2610 26 6 1.9593 -0.1130 -6.1399 27 9 2.6612 -1.2598 -6.2727 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6052 -1.7198 -1.2952 32 1 3.1263 -0.7995 -1.2057 33 1 1.1489 0.8595 -2.3518 34 1 0.6015 1.8985 -3.7637 35 1 -1.2699 7.5277 -5.3219 36 1 0.5760 2.3347 -8.0043 37 1 1.8621 0.2533 -8.2441 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362158241.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:54 Heat of formation + Delta-G solvation = -144.691027 kcal Electronic energy + Delta-G solvation = -26491.020661 eV Core-core repulsion = 22273.577411 eV Total energy + Delta-G solvation = -4217.443250 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.073 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -50.14791 -41.30924 -39.57995 -38.48466 -37.34431 -36.48931 -36.05851 -35.11379 -33.91771 -32.30833 -31.92223 -28.18516 -27.82690 -25.52397 -24.38427 -23.70556 -21.99534 -20.78806 -19.94011 -18.85353 -18.57689 -18.08343 -17.90428 -17.51589 -17.07275 -16.75490 -16.63134 -16.44619 -15.83262 -15.78263 -15.70649 -15.50909 -14.96808 -14.46858 -14.41507 -14.24652 -14.16728 -13.99335 -13.92923 -13.60547 -13.44924 -13.20068 -12.92415 -12.81026 -12.67798 -12.39687 -12.30281 -12.28709 -12.26072 -11.98847 -11.67733 -11.18826 -11.16079 -10.84121 -10.49992 -10.27842 -10.13267 -8.70286 -7.43141 -0.64413 -0.26511 0.15137 1.43864 1.44316 1.50522 1.50924 1.57469 1.71780 1.98511 2.26038 2.35993 2.65167 2.87400 2.92987 3.34017 3.44170 3.49971 3.66056 3.81116 3.83447 3.88433 4.06605 4.18194 4.21715 4.54122 4.61845 4.64736 4.69984 4.71794 4.84587 4.90770 5.02460 5.07658 5.19341 5.33303 5.36722 5.50086 5.94944 6.27511 6.49095 6.84438 6.98334 8.26203 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.009799 B = 0.003836 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.857894 B = 7297.798152 C = 9084.169543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.003 3.997 3 H 0.154 0.846 4 C 0.243 3.757 5 N -0.482 5.482 6 C 0.128 3.872 7 N -0.709 5.709 8 C 0.569 3.431 9 O -0.559 6.559 10 C -0.204 4.204 11 C 0.038 3.962 12 C -0.672 4.672 13 S 2.604 3.396 14 O -1.008 7.008 15 O -1.017 7.017 16 C -1.021 5.021 17 H 0.124 0.876 18 C 0.078 3.922 19 N -0.887 5.887 20 Si 0.983 3.017 21 H -0.253 1.253 22 H -0.268 1.268 23 H -0.248 1.248 24 C 0.024 3.976 25 C -0.169 4.169 26 C 0.187 3.813 27 F -0.117 7.117 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.418 0.582 34 H 0.170 0.830 35 H 0.300 0.700 36 H 0.165 0.835 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.019 -7.838 3.223 9.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.018 4.018 3 H 0.172 0.828 4 C -0.075 4.075 5 N -0.158 5.158 6 C 0.004 3.996 7 N -0.363 5.363 8 C 0.356 3.644 9 O -0.439 6.439 10 C -0.209 4.209 11 C 0.019 3.981 12 C -0.758 4.758 13 S 2.790 3.210 14 O -1.005 7.005 15 O -1.014 7.014 16 C -1.154 5.154 17 H 0.143 0.857 18 C -0.136 4.136 19 N -0.517 5.517 20 Si 0.801 3.199 21 H -0.177 1.177 22 H -0.192 1.192 23 H -0.171 1.171 24 C 0.006 3.994 25 C -0.188 4.188 26 C 0.166 3.834 27 F -0.095 7.095 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.257 0.743 34 H 0.187 0.813 35 H 0.110 0.890 36 H 0.183 0.817 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 4.996 -9.328 4.611 11.543 hybrid contribution 0.777 0.797 -0.334 1.162 sum 5.773 -8.531 4.277 11.153 Atomic orbital electron populations 1.21967 0.90207 1.04102 1.05017 1.19141 0.98433 1.00502 0.83731 0.82815 1.29121 0.91879 0.92432 0.94085 1.81286 1.10525 1.10810 1.13203 1.21324 1.01109 0.95477 0.81713 1.45672 1.57604 1.28469 1.04529 1.17815 0.78999 0.84090 0.83469 1.90828 1.41069 1.24986 1.87012 1.20058 1.08205 0.99458 0.93141 1.21129 0.88031 0.89723 0.99204 1.31006 1.20898 1.23752 1.00099 1.00598 0.74741 0.73209 0.72431 1.93294 1.74637 1.87663 1.44914 1.93305 1.74564 1.86288 1.47287 1.30481 1.10359 1.08026 1.66575 0.85749 1.25869 0.97742 1.02191 0.87788 1.69968 1.16030 1.25145 1.40595 0.85252 0.78232 0.75602 0.80771 1.17708 1.19205 1.17135 1.21305 0.88328 0.93195 0.96610 1.21527 1.01913 0.95943 0.99410 1.18099 0.89597 0.82021 0.93642 1.91589 1.75076 1.46334 1.96535 0.90115 0.89203 0.91453 0.90250 0.90310 0.74255 0.81293 0.89011 0.81724 0.79783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.02 71.98 0.65 -0.74 16 2 C 0.00 0.03 2.80 -12.60 -0.04 0.00 16 3 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 4 C 0.24 3.99 14.64 89.44 1.31 5.30 16 5 N -0.48 -11.31 18.54 20.01 0.37 -10.94 16 6 C 0.13 1.83 5.02 86.38 0.43 2.26 16 7 N -0.71 -12.40 5.23 -466.11 -2.44 -14.84 16 8 C 0.57 14.71 7.77 86.74 0.67 15.39 16 9 O -0.56 -18.02 15.34 -3.96 -0.06 -18.08 16 10 C -0.20 -5.56 5.88 -20.05 -0.12 -5.68 16 11 C 0.04 1.10 9.01 22.52 0.20 1.30 16 12 C -0.67 -22.79 5.81 22.23 0.13 -22.67 16 13 S 2.60 119.59 4.65 -56.49 -0.26 119.32 16 14 O -1.01 -49.87 17.15 -128.00 -2.20 -52.06 16 15 O -1.02 -52.88 17.14 -128.00 -2.19 -55.07 16 16 C -1.02 -48.74 9.58 67.74 0.65 -48.09 16 17 H 0.12 5.24 7.81 -2.91 -0.02 5.21 16 18 C 0.08 3.85 5.46 84.66 0.46 4.31 16 19 N -0.89 -47.54 13.19 21.45 0.28 -47.25 16 20 Si 0.98 36.66 29.54 68.60 2.03 38.69 16 21 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 22 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 23 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 24 C 0.02 0.71 9.51 22.32 0.21 0.92 16 25 C -0.17 -4.05 10.01 22.28 0.22 -3.82 16 26 C 0.19 5.11 7.29 22.68 0.17 5.27 16 27 F -0.12 -3.41 15.55 44.97 0.70 -2.71 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.75 7.18 -2.38 -0.02 0.73 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.42 5.58 5.69 -92.70 -0.53 5.05 16 34 H 0.17 4.03 5.95 -2.91 -0.02 4.01 16 35 H 0.30 14.51 8.31 -92.70 -0.77 13.73 16 36 H 0.17 4.47 7.60 -2.91 -0.02 4.45 16 37 H 0.18 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -75.39 350.77 1.81 -73.58 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.62 Total: 15.60 kcal Atomic # 6 Polarization: -51.19 SS G_CDS: 4.96 Total: -46.23 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -1.79 Total: -73.04 kcal Atomic # 8 Polarization: -120.77 SS G_CDS: -4.45 Total: -125.22 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.70 Total: -2.71 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Atomic # 16 Polarization: 119.59 SS G_CDS: -0.26 Total: 119.32 kcal Total: -75.39 1.81 -73.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362158241.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.106 kcal (2) G-P(sol) polarization free energy of solvation -75.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds