Wall clock time and date at job start Sat Apr 11 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38348 * 119.91349 * 2 1 4 4 C 1.38551 * 120.28313 * 180.27837 * 3 2 1 5 5 F 1.35105 * 119.95454 * 179.72291 * 4 3 2 6 6 C 1.38203 * 120.09845 * 359.69473 * 4 3 2 7 7 C 1.39584 * 119.81551 * 0.03028 * 6 4 3 8 8 C 1.43203 * 120.13342 * 180.02562 * 7 6 4 9 9 N 4.80136 * 134.64617 * 179.97438 * 2 1 3 10 10 C 1.37937 * 119.91019 * 179.72228 * 2 1 3 11 11 S 1.76199 * 120.04874 * 0.02562 * 10 2 1 12 12 O 1.42103 * 106.40256 * 329.15972 * 11 10 2 13 13 O 1.42097 * 106.40174 * 196.24018 * 11 10 2 14 14 N 1.65595 * 107.21699 * 82.70013 * 11 10 2 15 15 C 1.47581 * 134.49234 * 90.00034 * 14 11 10 16 16 C 1.53953 * 86.11872 * 155.35632 * 15 14 11 17 17 O 1.42899 * 113.74320 * 269.15597 * 16 15 14 18 18 C 1.50699 * 113.73987 * 137.94852 * 16 15 14 19 19 H 1.08000 * 119.99943 * 5.50075 * 18 16 15 20 20 C 1.37880 * 119.99858 * 185.49618 * 18 16 15 21 21 N 1.31512 * 119.99734 * 14.54292 * 20 18 16 22 22 Si 1.86796 * 120.00123 * 194.54104 * 20 18 16 23 23 H 1.48492 * 109.47381 * 180.02562 * 22 20 18 24 24 H 1.48506 * 109.47354 * 300.00252 * 22 20 18 25 25 H 1.48504 * 109.46967 * 60.00152 * 22 20 18 26 26 C 1.47582 * 134.49612 * 269.99528 * 14 11 10 27 27 H 1.09000 * 109.47246 * 265.27071 * 1 2 3 28 28 H 1.08997 * 109.46813 * 25.26669 * 1 2 3 29 29 H 1.08994 * 109.46975 * 145.26687 * 1 2 3 30 30 H 1.08005 * 119.85900 * 0.02562 * 3 2 1 31 31 H 1.07995 * 120.09105 * 179.97438 * 6 4 3 32 32 H 1.08998 * 113.77187 * 41.05722 * 15 14 11 33 33 H 1.08999 * 113.77291 * 269.66092 * 15 14 11 34 34 H 0.96698 * 113.99580 * 172.49809 * 17 16 15 35 35 H 0.96994 * 120.00184 * 355.98019 * 21 20 18 36 36 H 1.09004 * 113.76873 * 90.33643 * 26 14 11 37 37 H 1.09005 * 113.76506 * 318.94669 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1992 0.0000 4 6 3.5824 1.2081 -0.0058 5 9 4.2494 2.3830 -0.0114 6 6 4.2832 0.0169 -0.0053 7 6 3.5913 -1.1953 0.0005 8 6 4.3106 -2.4336 0.0016 9 7 4.8811 -3.4160 0.0015 10 6 2.1948 -1.1956 0.0058 11 16 1.3127 -2.7209 0.0125 12 8 0.0984 -2.4791 0.7098 13 8 2.2447 -3.7217 0.3987 14 7 0.8940 -3.0519 -1.5551 15 6 1.5364 -3.7819 -2.6651 16 6 0.1136 -3.9838 -3.2173 17 8 -0.5143 -5.1849 -2.7645 18 6 0.0086 -3.7919 -4.7084 19 1 0.8996 -3.6248 -5.2954 20 6 -1.2250 -3.8298 -5.3231 21 7 -2.3217 -3.7454 -4.6023 22 14 -1.3385 -4.0010 -7.1797 23 1 -2.7657 -4.0161 -7.5892 24 1 -0.6508 -2.8541 -7.8256 25 1 -0.6888 -5.2684 -7.6006 26 6 -0.2716 -2.7353 -2.4032 27 1 -0.3634 -0.0847 1.0242 28 1 -0.3633 0.9293 -0.4386 29 1 -0.3633 -0.8445 -0.5855 30 1 1.6532 2.1324 0.0004 31 1 5.3631 0.0240 -0.0102 32 1 2.0240 -4.7073 -2.3585 33 1 2.1677 -3.1559 -3.2957 34 1 -1.4453 -5.2603 -3.0146 35 1 -2.2649 -3.7152 -3.6345 36 1 -0.1715 -1.8016 -2.9567 37 1 -1.2276 -2.8250 -1.8872 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364849916.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:58 Heat of formation + Delta-G solvation = -85.475742 kcal Electronic energy + Delta-G solvation = -27838.260879 eV Core-core repulsion = 23623.385397 eV Total energy + Delta-G solvation = -4214.875483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.073 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.24274 -40.82113 -40.56328 -38.86147 -37.52851 -37.14583 -36.16353 -34.26847 -34.20987 -32.48311 -29.45143 -28.46858 -27.17532 -26.25068 -25.71386 -23.70888 -21.73469 -20.37202 -20.06941 -19.82108 -18.85046 -18.46415 -18.28857 -17.47758 -16.98717 -16.94182 -16.69721 -16.19260 -15.68586 -15.47499 -15.36033 -15.11791 -15.02902 -14.84078 -14.55396 -14.48990 -14.41493 -14.19265 -14.09272 -13.74161 -13.59798 -13.36976 -13.15412 -12.92024 -12.81512 -12.68027 -12.67964 -12.55225 -12.29530 -12.05869 -11.87868 -11.07850 -10.71851 -10.50385 -10.35840 -10.24026 -9.82936 -8.63022 -6.42140 -1.10961 -0.81453 -0.40433 1.38834 1.46280 1.63667 1.68284 1.70240 1.89222 2.23503 2.28444 2.56373 2.59909 2.80849 2.90586 3.01766 3.37420 3.40584 3.63860 3.71618 3.98104 3.99426 4.08640 4.21866 4.33933 4.46041 4.47692 4.55044 4.64668 4.70954 4.73482 4.85312 4.97393 4.99528 5.14811 5.40961 5.54216 5.81416 6.15723 6.19027 6.52210 6.98125 7.34583 8.70911 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.004025 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.771359 B = 6954.196485 C = 7385.555655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 C -0.134 4.134 4 C 0.168 3.832 5 F -0.116 7.116 6 C -0.121 4.121 7 C 0.098 3.902 8 C 0.234 3.766 9 N -0.392 5.392 10 C -0.670 4.670 11 S 2.697 3.303 12 O -0.963 6.963 13 O -0.982 6.982 14 N -1.025 6.025 15 C 0.145 3.855 16 C 0.198 3.802 17 O -0.580 6.580 18 C -0.629 4.629 19 H 0.065 0.935 20 C -0.003 4.003 21 N -0.915 5.915 22 Si 1.112 2.888 23 H -0.286 1.286 24 H -0.268 1.268 25 H -0.280 1.280 26 C 0.111 3.889 27 H 0.106 0.894 28 H 0.119 0.881 29 H 0.059 0.941 30 H 0.191 0.809 31 H 0.181 0.819 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.373 0.627 35 H 0.264 0.736 36 H 0.099 0.901 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.739 15.461 6.854 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.051 3.949 3 C -0.154 4.154 4 C 0.149 3.851 5 F -0.094 7.094 6 C -0.143 4.143 7 C 0.093 3.907 8 C -0.083 4.083 9 N -0.067 5.067 10 C -0.761 4.761 11 S 2.793 3.207 12 O -0.953 6.953 13 O -0.973 6.973 14 N -0.865 5.865 15 C 0.020 3.980 16 C 0.155 3.845 17 O -0.387 6.387 18 C -0.667 4.667 19 H 0.083 0.917 20 C -0.205 4.205 21 N -0.552 5.552 22 Si 0.935 3.065 23 H -0.212 1.212 24 H -0.193 1.193 25 H -0.206 1.206 26 C -0.014 4.014 27 H 0.124 0.876 28 H 0.138 0.862 29 H 0.078 0.922 30 H 0.208 0.792 31 H 0.198 0.802 32 H 0.083 0.917 33 H 0.126 0.874 34 H 0.222 0.778 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.064 13.360 6.859 17.046 hybrid contribution 0.775 0.800 1.092 1.560 sum 8.839 14.160 7.951 18.489 Atomic orbital electron populations 1.21460 0.87901 1.05484 1.05631 1.19545 0.97243 0.90006 0.88084 1.21690 0.92220 1.00241 1.01235 1.17515 0.90276 0.80896 0.96460 1.91615 1.80486 1.44413 1.92857 1.21368 1.02831 0.88585 1.01521 1.15024 0.89167 0.87428 0.99090 1.25580 0.94422 0.92933 0.95323 1.81143 1.10171 1.09270 1.06146 1.30912 1.04097 1.21282 1.19831 1.01539 0.73132 0.73832 0.72160 1.93563 1.44599 1.86355 1.70816 1.93563 1.64612 1.57713 1.81373 1.60084 1.31857 1.67676 1.26848 1.22940 0.96336 0.94615 0.84113 1.20466 0.90243 0.81796 0.91993 1.86247 1.29226 1.42784 1.80474 1.22494 0.96618 1.55531 0.92087 0.91685 1.27056 0.91646 0.91168 1.10667 1.71042 1.30552 1.45756 1.07882 0.82950 0.76070 0.77621 0.69858 1.21200 1.19332 1.20574 1.23829 0.86751 1.01659 0.89199 0.87564 0.86215 0.92198 0.79165 0.80168 0.91685 0.87353 0.77802 0.92466 0.88261 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.37 71.24 0.60 -2.33 16 2 C 0.05 1.07 5.87 -19.91 -0.12 0.95 16 3 C -0.13 -1.84 9.65 22.37 0.22 -1.62 16 4 C 0.17 2.41 7.29 22.34 0.16 2.58 16 5 F -0.12 -1.53 17.26 44.97 0.78 -0.76 16 6 C -0.12 -2.01 9.74 22.59 0.22 -1.79 16 7 C 0.10 2.38 5.73 -21.37 -0.12 2.26 16 8 C 0.23 7.21 12.47 88.33 1.10 8.31 16 9 N -0.39 -14.12 17.99 19.00 0.34 -13.78 16 10 C -0.67 -17.68 6.00 22.54 0.14 -17.54 16 11 S 2.70 95.10 5.47 -56.49 -0.31 94.79 16 12 O -0.96 -35.67 14.80 -128.00 -1.89 -37.57 16 13 O -0.98 -40.47 14.60 -128.00 -1.87 -42.33 16 14 N -1.02 -38.62 4.10 -533.20 -2.18 -40.80 16 15 C 0.14 5.82 8.36 86.48 0.72 6.55 16 16 C 0.20 9.03 1.08 -10.88 -0.01 9.02 16 17 O -0.58 -28.61 13.46 -148.98 -2.00 -30.62 16 18 C -0.63 -30.45 8.56 25.60 0.22 -30.24 16 19 H 0.06 3.08 7.86 -2.91 -0.02 3.06 16 20 C 0.00 -0.16 5.24 84.66 0.44 0.28 16 21 N -0.91 -46.97 13.07 21.45 0.28 -46.68 16 22 Si 1.11 44.03 29.93 68.60 2.05 46.09 16 23 H -0.29 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 25 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 26 C 0.11 4.40 6.31 86.48 0.55 4.95 16 27 H 0.11 2.05 7.87 -2.39 -0.02 2.03 16 28 H 0.12 1.46 8.05 -2.39 -0.02 1.44 16 29 H 0.06 1.52 5.00 -2.39 -0.01 1.51 16 30 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 31 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.11 3.81 8.09 -2.39 -0.02 3.79 16 34 H 0.37 18.06 6.86 -74.06 -0.51 17.55 16 35 H 0.26 13.32 5.26 -92.71 -0.49 12.83 16 36 H 0.10 3.63 8.09 -2.38 -0.02 3.61 16 37 H 0.07 2.67 7.84 -2.38 -0.02 2.66 16 Total: -1.00 -66.16 335.83 0.23 -65.93 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.93 Total: 24.35 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 4.11 Total: -18.62 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -1.56 Total: -101.26 kcal Atomic # 8 Polarization: -104.75 SS G_CDS: -5.77 Total: -110.52 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.78 Total: -0.76 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.05 Total: 46.09 kcal Atomic # 16 Polarization: 95.10 SS G_CDS: -0.31 Total: 94.79 kcal Total: -66.16 0.23 -65.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364849916.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.546 kcal (2) G-P(sol) polarization free energy of solvation -66.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds