Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39620 * 120.13822 * 168.78169 * 3 2 1 5 5 C 1.38153 * 119.82259 * 180.02562 * 4 3 2 6 6 F 1.35105 * 119.95341 * 179.97438 * 5 4 3 7 7 C 1.38600 * 120.09805 * 359.74877 * 5 4 3 8 8 C 1.38306 * 120.27816 * 0.51014 * 7 5 4 9 9 S 1.76201 * 119.91014 * 179.76893 * 8 7 5 10 10 O 1.42101 * 106.40204 * 156.18155 * 9 8 7 11 11 O 1.42094 * 106.40482 * 23.25755 * 9 8 7 12 12 N 1.65608 * 107.21619 * 269.71886 * 9 8 7 13 13 C 1.47018 * 125.64670 * 90.02520 * 12 9 8 14 14 C 1.54320 * 107.27210 * 181.02466 * 13 12 9 15 15 C 1.55159 * 102.94349 * 22.19183 * 14 13 12 16 16 O 1.42899 * 111.00365 * 82.60848 * 15 14 13 17 17 C 1.50699 * 111.00503 * 206.42735 * 15 14 13 18 18 H 1.08003 * 119.99978 * 118.54554 * 17 15 14 19 19 C 1.37876 * 119.99776 * 298.54199 * 17 15 14 20 20 N 1.31511 * 120.00217 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99717 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46775 * 60.00616 * 21 19 17 23 23 H 1.48503 * 109.46747 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47351 * 300.00101 * 21 19 17 25 25 C 1.47421 * 125.64895 * 269.72101 * 12 9 8 26 26 C 1.37978 * 120.17957 * 359.48452 * 8 7 5 27 27 H 1.08002 * 120.08998 * 0.04436 * 4 3 2 28 28 H 1.08001 * 119.86527 * 180.27184 * 7 5 4 29 29 H 1.09001 * 109.88359 * 300.44466 * 13 12 9 30 30 H 1.09002 * 109.88404 * 61.60638 * 13 12 9 31 31 H 1.08996 * 110.72172 * 140.55457 * 14 13 12 32 32 H 1.08998 * 110.72014 * 263.65340 * 14 13 12 33 33 H 0.96711 * 113.99741 * 61.45670 * 16 15 14 34 34 H 0.97005 * 120.00146 * 179.97438 * 20 19 17 35 35 H 1.09005 * 110.36058 * 274.74508 * 25 12 9 36 36 H 1.08997 * 110.36930 * 37.06636 * 25 12 9 37 37 H 1.07999 * 120.05353 * 180.27627 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 1.1853 -0.2349 5 6 4.6500 1.1784 -0.2340 6 9 5.3305 2.3232 -0.4615 7 6 5.3390 -0.0003 0.0047 8 6 4.6493 -1.1773 0.2326 9 16 5.5350 -2.6714 0.5289 10 8 4.6565 -3.5218 1.2531 11 8 6.8172 -2.2896 1.0077 12 7 5.7809 -3.3951 -0.9402 13 6 6.9411 -3.1809 -1.8174 14 6 6.7253 -4.0406 -3.0807 15 6 5.1886 -4.2540 -3.0975 16 8 4.5222 -3.1332 -3.6822 17 6 4.8281 -5.5285 -3.8163 18 1 4.3154 -6.3194 -3.2890 19 6 5.1526 -5.6847 -5.1472 20 7 5.7773 -4.7218 -5.7892 21 14 4.7064 -7.2649 -6.0380 22 1 3.2339 -7.4536 -6.0033 23 1 5.1624 -7.1833 -7.4490 24 1 5.3687 -8.4139 -5.3699 25 6 4.8756 -4.3655 -1.5822 26 6 3.2695 -1.1835 0.2344 27 1 2.7318 2.1048 -0.4166 28 1 6.4190 -0.0006 0.0089 29 1 7.0087 -2.1283 -2.0923 30 1 7.8532 -3.4924 -1.3083 31 1 7.0500 -3.5042 -3.9722 32 1 7.2487 -4.9927 -2.9932 33 1 4.7650 -2.9681 -4.6036 34 1 6.0060 -4.8320 -6.7254 35 1 5.0835 -5.3734 -1.2227 36 1 3.8363 -4.0999 -1.3894 37 1 2.7330 -2.1028 0.4170 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364871048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = -101.318082 kcal Electronic energy + Delta-G solvation = -27444.749177 eV Core-core repulsion = 23229.186719 eV Total energy + Delta-G solvation = -4215.562458 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.073 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.27867 -39.66797 -38.16753 -37.20925 -36.68267 -35.81206 -34.36870 -32.27643 -32.11757 -31.19287 -29.33804 -28.38599 -24.94803 -24.81229 -23.69614 -21.67168 -20.36851 -19.92248 -18.54453 -17.52360 -17.25877 -17.01071 -16.95681 -16.57797 -16.15526 -16.00784 -15.37399 -15.00687 -14.55894 -14.30292 -14.21999 -14.02599 -13.56343 -13.48364 -13.09322 -13.00812 -12.67587 -12.60287 -12.47086 -12.37029 -12.08656 -11.99747 -11.94177 -11.89060 -11.40504 -11.16408 -11.07027 -10.86257 -10.60732 -10.51099 -10.08813 -9.88879 -9.47565 -9.26625 -8.76156 -8.52858 -8.28686 -6.33376 -4.41571 0.00985 0.35363 0.50923 2.28445 2.31349 3.05282 3.18780 3.24199 3.25726 3.27656 3.35347 3.73476 3.81013 4.21697 4.30650 4.37396 4.48566 4.59440 4.83009 4.92179 5.25765 5.27739 5.38512 5.47147 5.54121 5.73381 5.81068 5.92319 6.08506 6.19038 6.24717 6.46463 6.64425 6.84745 6.91758 7.12746 7.26526 7.31353 7.68489 7.96490 8.60788 9.23862 9.32732 10.73843 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.012605 B = 0.003924 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.820903 B = 7133.168792 C = 7706.958982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C 0.255 3.745 3 C -0.015 4.015 4 C -0.058 4.058 5 C 0.084 3.916 6 F -0.127 7.127 7 C -0.022 4.022 8 C -0.647 4.647 9 S 2.707 3.293 10 O -0.949 6.949 11 O -0.953 6.953 12 N -0.999 5.999 13 C 0.119 3.881 14 C -0.132 4.132 15 C 0.250 3.750 16 O -0.584 6.584 17 C -0.538 4.538 18 H 0.065 0.935 19 C 0.075 3.925 20 N -0.895 5.895 21 Si 0.901 3.099 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.134 3.866 26 C 0.024 3.976 27 H 0.153 0.847 28 H 0.161 0.839 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.382 0.618 34 H 0.269 0.731 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 9.573 8.803 13.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.073 5.073 2 C -0.061 4.061 3 C -0.019 4.019 4 C -0.079 4.079 5 C 0.064 3.936 6 F -0.106 7.106 7 C -0.043 4.043 8 C -0.730 4.730 9 S 2.794 3.206 10 O -0.940 6.940 11 O -0.943 6.943 12 N -0.839 5.839 13 C -0.005 4.005 14 C -0.172 4.172 15 C 0.209 3.791 16 O -0.393 6.393 17 C -0.577 4.577 18 H 0.083 0.917 19 C -0.128 4.128 20 N -0.533 5.533 21 Si 0.729 3.271 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.200 1.200 25 C 0.010 3.990 26 C 0.002 3.998 27 H 0.171 0.829 28 H 0.178 0.822 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.231 0.769 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.526 9.473 10.113 13.867 hybrid contribution 0.262 0.026 -1.721 1.741 sum -0.264 9.499 8.392 12.678 Atomic orbital electron populations 1.81280 1.11619 1.06479 1.07887 1.25283 0.92149 0.94461 0.94233 1.15660 0.84949 0.94397 1.06934 1.21345 0.92644 0.98608 0.95324 1.17334 0.89538 0.82765 1.04002 1.91571 1.79611 1.47241 1.92153 1.21133 1.01822 0.89882 0.91452 1.31388 1.05857 1.20593 1.15202 1.01687 0.73495 0.72943 0.72431 1.93592 1.67361 1.64001 1.69003 1.93572 1.38717 1.83810 1.78240 1.58439 1.32005 1.55262 1.38196 1.21916 0.86221 1.00144 0.92245 1.23175 1.00781 0.98808 0.94458 1.19647 0.87025 0.85521 0.86893 1.86087 1.70372 1.51028 1.31769 1.21427 1.39143 1.01246 0.95861 0.91689 1.24966 0.93626 0.96940 0.97300 1.69697 1.39893 1.32752 1.11001 0.86502 0.79082 0.83100 0.78435 1.20050 1.21192 1.20018 1.22287 0.91855 0.90733 0.94113 1.21026 0.92092 0.97942 0.88719 0.82899 0.82172 0.92656 0.92087 0.89579 0.91227 0.76851 0.92158 0.90178 0.91419 0.82446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.52 18.54 41.84 0.78 -4.75 16 2 C 0.25 3.02 15.33 -22.47 -0.34 2.68 16 3 C -0.02 -0.16 5.73 -106.94 -0.61 -0.77 16 4 C -0.06 -0.53 9.73 -39.10 -0.38 -0.91 16 5 C 0.08 0.86 7.29 -39.48 -0.29 0.57 16 6 F -0.13 -1.32 17.26 2.25 0.04 -1.28 16 7 C -0.02 -0.25 9.49 -39.42 -0.37 -0.62 16 8 C -0.65 -8.07 5.97 -39.65 -0.24 -8.30 16 9 S 2.71 39.81 5.94 -107.50 -0.64 39.17 16 10 O -0.95 -15.61 16.85 -57.17 -0.96 -16.57 16 11 O -0.95 -15.09 16.84 -57.17 -0.96 -16.06 16 12 N -1.00 -16.41 3.70 -111.30 -0.41 -16.82 16 13 C 0.12 1.96 6.99 -3.07 -0.02 1.94 16 14 C -0.13 -2.60 5.37 -24.90 -0.13 -2.73 16 15 C 0.25 5.41 0.87 -89.50 -0.08 5.33 16 16 O -0.58 -13.10 13.17 -35.23 -0.46 -13.57 16 17 C -0.54 -12.97 8.27 -34.44 -0.28 -13.26 16 18 H 0.06 1.55 7.79 -52.48 -0.41 1.15 16 19 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 20 N -0.89 -21.73 10.76 55.43 0.60 -21.14 16 21 Si 0.90 19.30 29.54 -169.99 -5.02 14.28 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 C 0.13 2.51 6.17 -2.41 -0.01 2.50 16 26 C 0.02 0.28 9.22 -39.16 -0.36 -0.08 16 27 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.16 1.58 7.60 -52.49 -0.40 1.18 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.78 7.55 -51.93 -0.39 1.39 16 32 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 33 H 0.38 8.78 7.57 45.56 0.34 9.12 16 34 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 35 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.16 1.73 7.61 -52.49 -0.40 1.33 16 LS Contribution 344.62 15.07 5.19 5.19 Total: -1.00 -27.80 344.62 -8.00 -35.80 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -2.91 Total: 7.70 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -3.23 Total: -11.97 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.96 Total: -42.70 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -2.39 Total: -46.19 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Atomic # 16 Polarization: 39.81 SS G_CDS: -0.64 Total: 39.17 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.80 -8.00 -35.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364871048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.523 kcal (2) G-P(sol) polarization free energy of solvation -27.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds