Wall clock time and date at job start Sat Apr 11 2020 05:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39620 * 120.13822 * 168.78169 * 3 2 1 5 5 C 1.38153 * 119.82259 * 180.02562 * 4 3 2 6 6 F 1.35105 * 119.95341 * 179.97438 * 5 4 3 7 7 C 1.38600 * 120.09805 * 359.74877 * 5 4 3 8 8 C 1.38306 * 120.27816 * 0.51014 * 7 5 4 9 9 S 1.76201 * 119.91014 * 179.76893 * 8 7 5 10 10 O 1.42101 * 106.40204 * 156.18155 * 9 8 7 11 11 O 1.42094 * 106.40482 * 23.25755 * 9 8 7 12 12 N 1.65608 * 107.21619 * 269.71886 * 9 8 7 13 13 C 1.47018 * 125.64670 * 90.02520 * 12 9 8 14 14 C 1.54320 * 107.27210 * 181.02466 * 13 12 9 15 15 C 1.55159 * 102.94349 * 22.19183 * 14 13 12 16 16 O 1.42899 * 111.00365 * 82.60848 * 15 14 13 17 17 C 1.50699 * 111.00503 * 206.42735 * 15 14 13 18 18 H 1.08003 * 119.99978 * 118.54554 * 17 15 14 19 19 C 1.37876 * 119.99776 * 298.54199 * 17 15 14 20 20 N 1.31511 * 120.00217 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99717 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46775 * 60.00616 * 21 19 17 23 23 H 1.48503 * 109.46747 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47351 * 300.00101 * 21 19 17 25 25 C 1.47421 * 125.64895 * 269.72101 * 12 9 8 26 26 C 1.37978 * 120.17957 * 359.48452 * 8 7 5 27 27 H 1.08002 * 120.08998 * 0.04436 * 4 3 2 28 28 H 1.08001 * 119.86527 * 180.27184 * 7 5 4 29 29 H 1.09001 * 109.88359 * 300.44466 * 13 12 9 30 30 H 1.09002 * 109.88404 * 61.60638 * 13 12 9 31 31 H 1.08996 * 110.72172 * 140.55457 * 14 13 12 32 32 H 1.08998 * 110.72014 * 263.65340 * 14 13 12 33 33 H 0.96711 * 113.99741 * 61.45670 * 16 15 14 34 34 H 0.97005 * 120.00146 * 179.97438 * 20 19 17 35 35 H 1.09005 * 110.36058 * 274.74508 * 25 12 9 36 36 H 1.08997 * 110.36930 * 37.06636 * 25 12 9 37 37 H 1.07999 * 120.05353 * 180.27627 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 1.1853 -0.2349 5 6 4.6500 1.1784 -0.2340 6 9 5.3305 2.3232 -0.4615 7 6 5.3390 -0.0003 0.0047 8 6 4.6493 -1.1773 0.2326 9 16 5.5350 -2.6714 0.5289 10 8 4.6565 -3.5218 1.2531 11 8 6.8172 -2.2896 1.0077 12 7 5.7809 -3.3951 -0.9402 13 6 6.9411 -3.1809 -1.8174 14 6 6.7253 -4.0406 -3.0807 15 6 5.1886 -4.2540 -3.0975 16 8 4.5222 -3.1332 -3.6822 17 6 4.8281 -5.5285 -3.8163 18 1 4.3154 -6.3194 -3.2890 19 6 5.1526 -5.6847 -5.1472 20 7 5.7773 -4.7218 -5.7892 21 14 4.7064 -7.2649 -6.0380 22 1 3.2339 -7.4536 -6.0033 23 1 5.1624 -7.1833 -7.4490 24 1 5.3687 -8.4139 -5.3699 25 6 4.8756 -4.3655 -1.5822 26 6 3.2695 -1.1835 0.2344 27 1 2.7318 2.1048 -0.4166 28 1 6.4190 -0.0006 0.0089 29 1 7.0087 -2.1283 -2.0923 30 1 7.8532 -3.4924 -1.3083 31 1 7.0500 -3.5042 -3.9722 32 1 7.2487 -4.9927 -2.9932 33 1 4.7650 -2.9681 -4.6036 34 1 6.0060 -4.8320 -6.7254 35 1 5.0835 -5.3734 -1.2227 36 1 3.8363 -4.0999 -1.3894 37 1 2.7330 -2.1028 0.4170 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364871048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:04 Heat of formation + Delta-G solvation = -120.287140 kcal Electronic energy + Delta-G solvation = -27445.571737 eV Core-core repulsion = 23229.186719 eV Total energy + Delta-G solvation = -4216.385018 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.073 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.08189 -40.55169 -39.69384 -38.43823 -37.67392 -37.04757 -35.97602 -34.10718 -33.01452 -32.06206 -30.86403 -29.91675 -26.67271 -25.69599 -24.61325 -23.06501 -21.58073 -21.31647 -19.79427 -19.00625 -18.49907 -18.14284 -17.90994 -17.47540 -17.13563 -16.83932 -16.81839 -16.61924 -16.03132 -15.77859 -15.20797 -15.04537 -14.88480 -14.51852 -14.50328 -14.08413 -13.97171 -13.60990 -13.60438 -13.49866 -13.41754 -13.35409 -13.29107 -13.10356 -13.06578 -12.74743 -12.52256 -12.28507 -12.19959 -12.06154 -11.75228 -11.14550 -10.76075 -10.55976 -10.13171 -10.03352 -9.87177 -8.16520 -6.29643 -0.92859 -0.69469 -0.42484 1.35978 1.37988 1.47122 1.49946 1.55258 1.89631 2.33522 2.42745 2.44926 2.64475 2.84388 3.09504 3.29469 3.53623 3.64600 3.73798 3.77064 3.95340 4.18824 4.31066 4.41864 4.49122 4.52832 4.63902 4.65964 4.72635 4.79970 5.00367 5.25060 5.31774 5.35680 5.43950 5.58351 5.67960 5.87634 6.19569 6.19840 6.74780 7.40960 7.49674 8.88423 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.012605 B = 0.003924 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.820903 B = 7133.168792 C = 7706.958982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.277 3.723 3 C -0.017 4.017 4 C -0.036 4.036 5 C 0.084 3.916 6 F -0.125 7.125 7 C -0.023 4.023 8 C -0.654 4.654 9 S 2.724 3.276 10 O -0.969 6.969 11 O -0.963 6.963 12 N -1.003 6.003 13 C 0.121 3.879 14 C -0.126 4.126 15 C 0.235 3.765 16 O -0.586 6.586 17 C -0.559 4.559 18 H 0.058 0.942 19 C 0.039 3.961 20 N -0.906 5.906 21 Si 0.950 3.050 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.138 3.862 26 C 0.018 3.982 27 H 0.185 0.815 28 H 0.173 0.827 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.376 0.624 34 H 0.268 0.732 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.355 10.857 9.262 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.038 4.038 3 C -0.022 4.022 4 C -0.057 4.057 5 C 0.064 3.936 6 F -0.103 7.103 7 C -0.043 4.043 8 C -0.741 4.741 9 S 2.815 3.185 10 O -0.960 6.960 11 O -0.954 6.954 12 N -0.842 5.842 13 C -0.003 4.003 14 C -0.166 4.166 15 C 0.194 3.806 16 O -0.394 6.394 17 C -0.598 4.598 18 H 0.076 0.924 19 C -0.163 4.163 20 N -0.545 5.545 21 Si 0.777 3.223 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.198 1.198 25 C 0.013 3.987 26 C -0.004 4.004 27 H 0.202 0.798 28 H 0.190 0.810 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.225 0.775 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.310 10.724 10.582 15.069 hybrid contribution 0.198 -0.295 -1.842 1.875 sum -0.113 10.429 8.741 13.608 Atomic orbital electron populations 1.81310 1.12688 1.07667 1.09329 1.25311 0.92093 0.93345 0.93072 1.15576 0.84228 0.94633 1.07725 1.21634 0.92349 0.99139 0.92598 1.17288 0.89796 0.82508 1.04000 1.91587 1.79624 1.46998 1.92121 1.21320 1.02620 0.89760 0.90610 1.30869 1.05859 1.19716 1.17621 1.00951 0.73065 0.73017 0.71454 1.93565 1.67730 1.65350 1.69358 1.93555 1.39614 1.84043 1.78186 1.58393 1.31672 1.55750 1.38350 1.21902 0.86885 1.00603 0.90928 1.22970 0.99251 0.98713 0.95664 1.19807 0.88224 0.84347 0.88191 1.86077 1.70742 1.51255 1.31340 1.21752 1.39258 1.02308 0.96481 0.92357 1.25513 0.93766 0.99055 0.97916 1.69768 1.40216 1.33570 1.10984 0.85734 0.78407 0.80643 0.77507 1.20435 1.21038 1.19826 1.22098 0.92612 0.91527 0.92493 1.21130 0.92026 0.98662 0.88559 0.79799 0.80963 0.90774 0.90350 0.91018 0.92387 0.77513 0.92253 0.90162 0.90959 0.82234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -11.58 18.54 19.01 0.35 -11.23 16 2 C 0.28 6.10 15.33 88.33 1.35 7.45 16 3 C -0.02 -0.33 5.73 -21.37 -0.12 -0.45 16 4 C -0.04 -0.55 9.73 22.58 0.22 -0.33 16 5 C 0.08 1.47 7.29 22.34 0.16 1.63 16 6 F -0.12 -2.19 17.26 44.97 0.78 -1.41 16 7 C -0.02 -0.45 9.49 22.37 0.21 -0.23 16 8 C -0.65 -15.07 5.97 22.22 0.13 -14.94 16 9 S 2.72 76.49 5.94 -56.49 -0.34 76.16 16 10 O -0.97 -31.08 16.85 -128.00 -2.16 -33.24 16 11 O -0.96 -28.86 16.84 -128.00 -2.16 -31.01 16 12 N -1.00 -31.83 3.70 -506.03 -1.87 -33.70 16 13 C 0.12 3.81 6.99 86.73 0.61 4.42 16 14 C -0.13 -4.94 5.37 31.78 0.17 -4.77 16 15 C 0.24 10.16 0.87 -10.07 -0.01 10.15 16 16 O -0.59 -26.25 13.17 -148.98 -1.96 -28.21 16 17 C -0.56 -27.17 8.27 25.60 0.21 -26.96 16 18 H 0.06 2.82 7.79 -2.91 -0.02 2.80 16 19 C 0.04 1.89 5.29 84.66 0.45 2.33 16 20 N -0.91 -44.19 10.76 21.45 0.23 -43.96 16 21 Si 0.95 39.56 29.54 68.60 2.03 41.59 16 22 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 C 0.14 5.10 6.17 86.93 0.54 5.64 16 26 C 0.02 0.40 9.22 22.54 0.21 0.60 16 27 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 28 H 0.17 2.93 7.60 -2.91 -0.02 2.91 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.07 2.98 7.55 -2.39 -0.02 2.96 16 32 H 0.06 2.35 8.04 -2.39 -0.02 2.33 16 33 H 0.38 17.43 7.57 -74.05 -0.56 16.87 16 34 H 0.27 12.67 8.31 -92.70 -0.77 11.89 16 35 H 0.08 2.92 8.04 -2.38 -0.02 2.90 16 36 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.16 3.36 7.61 -2.91 -0.02 3.33 16 Total: -1.00 -58.18 344.62 -0.38 -58.56 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.59 Total: 21.90 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 4.13 Total: -15.46 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -1.29 Total: -88.89 kcal Atomic # 8 Polarization: -86.18 SS G_CDS: -6.28 Total: -92.46 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.78 Total: -1.41 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Atomic # 16 Polarization: 76.49 SS G_CDS: -0.34 Total: 76.16 kcal Total: -58.18 -0.38 -58.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364871048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.726 kcal (2) G-P(sol) polarization free energy of solvation -58.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds