Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86803 * 119.99652 * 2 1 4 4 H 1.48496 * 109.47107 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46896 * 120.00280 * 3 2 1 6 6 H 1.48503 * 109.46994 * 239.99926 * 3 2 1 7 7 C 1.40306 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00452 * 159.50916 * 7 2 1 9 9 C 1.40470 * 119.99895 * 339.51782 * 7 2 1 10 10 C 1.44265 * 123.72038 * 335.41007 * 9 7 2 11 11 C 1.32676 * 114.43538 * 179.82867 * 10 9 7 12 12 S 1.75478 * 111.37491 * 0.43227 * 11 10 9 13 13 C 1.39527 * 123.72774 * 155.71174 * 9 7 2 14 14 C 1.46614 * 125.22550 * 359.93857 * 13 9 7 15 15 O 1.22060 * 120.00307 * 0.02562 * 14 13 9 16 16 N 1.34220 * 119.99731 * 179.97438 * 14 13 9 17 17 C 1.32697 * 120.00026 * 179.97438 * 16 14 13 18 18 N 1.34349 * 126.13847 * 359.69564 * 17 16 14 19 19 C 1.30702 * 110.12198 * 179.81658 * 18 17 16 20 20 N 1.35148 * 109.45058 * 0.44344 * 19 18 17 21 21 H 0.96997 * 126.59891 * 179.70073 * 20 19 18 22 22 N 1.37544 * 126.14025 * 179.97438 * 17 16 14 23 23 C 1.39787 * 127.04850 * 359.97438 * 22 17 16 24 24 C 1.38908 * 120.07627 * 314.73362 * 23 22 17 25 25 C 1.38102 * 119.92506 * 179.71973 * 24 23 22 26 26 C 1.38291 * 120.07263 * 0.55057 * 25 24 23 27 27 C 1.38293 * 120.14707 * 359.72035 * 26 25 24 28 28 C 1.38101 * 120.07429 * 359.97438 * 27 26 25 29 29 H 0.97002 * 119.99702 * 174.00156 * 1 2 3 30 30 H 1.07995 * 122.78183 * 0.04324 * 10 9 7 31 31 H 1.07997 * 124.31570 * 180.21319 * 11 10 9 32 32 H 1.08003 * 125.27066 * 180.18177 * 19 18 17 33 33 H 1.08000 * 120.03466 * 359.96937 * 24 23 22 34 34 H 1.08003 * 119.96453 * 180.26780 * 25 24 23 35 35 H 1.07995 * 119.92138 * 179.70311 * 26 25 24 36 36 H 1.07997 * 119.95594 * 180.02562 * 27 26 25 37 37 H 1.07997 * 120.03565 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 1.2754 2.7464 0.0006 5 1 3.0942 1.6965 1.2125 6 1 3.0942 1.6965 -1.2125 7 6 2.0081 -1.2150 0.0005 8 1 3.0369 -1.2447 -0.3268 9 6 1.3725 -2.3929 0.4267 10 6 0.2463 -2.4141 1.3281 11 6 -0.2123 -3.6279 1.6051 12 16 0.7189 -4.8666 0.7819 13 6 1.7643 -3.6719 0.0299 14 6 2.8773 -3.9724 -0.8760 15 8 3.5441 -3.0643 -1.3459 16 7 3.1636 -5.2460 -1.1878 17 6 4.1706 -5.5180 -2.0081 18 7 4.9763 -4.6197 -2.5985 19 6 5.8641 -5.2299 -3.3386 20 7 5.6669 -6.5651 -3.2690 21 1 6.1811 -7.2502 -3.7242 22 7 4.5734 -6.7700 -2.4107 23 6 4.0107 -7.9951 -2.0413 24 6 3.6947 -8.2433 -0.7116 25 6 3.1334 -9.4526 -0.3510 26 6 2.8965 -10.4201 -1.3102 27 6 3.2151 -10.1783 -2.6341 28 6 3.7708 -8.9689 -3.0024 29 1 -0.4850 -0.8355 -0.0878 30 1 -0.1897 -1.5162 1.7403 31 1 -1.0495 -3.8283 2.2572 32 1 6.6333 -4.7424 -3.9193 33 1 3.8839 -7.4900 0.0387 34 1 2.8835 -9.6446 0.6820 35 1 2.4620 -11.3667 -1.0248 36 1 3.0284 -10.9360 -3.3807 37 1 4.0190 -8.7806 -4.0365 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001457404696.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = 152.634444 kcal Electronic energy + Delta-G solvation = -25702.877362 eV Core-core repulsion = 21961.389088 eV Total energy + Delta-G solvation = -3741.488274 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.073 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.10720 -39.16561 -37.77458 -36.16610 -34.20414 -33.44912 -32.80121 -31.11450 -30.76267 -29.25992 -28.69267 -25.82406 -23.90667 -23.31202 -22.56157 -22.06623 -21.32085 -19.69961 -18.84509 -18.59944 -17.01218 -16.51754 -16.13591 -16.10396 -15.84636 -15.37563 -14.59270 -14.51726 -14.25483 -14.07871 -13.66540 -13.59751 -13.17608 -12.99610 -12.75149 -12.37114 -11.85290 -11.74467 -11.45524 -11.31014 -10.97061 -10.75619 -10.57570 -10.46812 -10.36786 -10.29815 -9.84350 -9.66367 -9.30484 -9.14266 -8.88666 -8.84988 -7.87210 -7.55990 -7.41949 -7.08378 -7.04994 -4.33109 0.76245 1.18186 1.20318 1.45595 2.27951 3.17027 3.19729 3.21148 3.26547 3.43095 3.45609 3.77547 3.88930 3.96092 4.08473 4.38277 4.64670 4.73124 4.85564 4.96062 4.98509 5.19365 5.24553 5.30998 5.46224 5.63653 5.71615 5.89250 6.04806 6.16715 6.34320 6.35273 6.46194 6.71554 6.78684 7.14887 7.23187 7.39079 7.48330 7.76930 7.90172 8.08635 8.13639 8.59024 8.67982 8.91176 9.93296 9.98056 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.003646 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.436081 B = 7677.259981 C = 9362.722635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.029 3.971 3 Si 1.074 2.926 4 H -0.274 1.274 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.429 4.429 8 H 0.108 0.892 9 C 0.103 3.897 10 C -0.148 4.148 11 C -0.205 4.205 12 S 0.007 5.993 13 C -0.390 4.390 14 C 0.555 3.445 15 O -0.535 6.535 16 N -0.605 5.605 17 C 0.573 3.427 18 N -0.511 5.511 19 C 0.355 3.645 20 N -0.513 5.513 21 H 0.445 0.555 22 N -0.378 5.378 23 C 0.173 3.827 24 C -0.091 4.091 25 C -0.096 4.096 26 C -0.125 4.125 27 C -0.105 4.105 28 C -0.138 4.138 29 H 0.300 0.700 30 H 0.127 0.873 31 H 0.137 0.863 32 H 0.236 0.764 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.994 -17.310 -6.228 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.194 4.194 3 Si 0.896 3.104 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.459 4.459 8 H 0.126 0.874 9 C 0.092 3.908 10 C -0.182 4.182 11 C -0.340 4.340 12 S 0.264 5.736 13 C -0.509 4.509 14 C 0.352 3.648 15 O -0.416 6.416 16 N -0.359 5.359 17 C 0.214 3.786 18 N -0.243 5.243 19 C 0.058 3.942 20 N -0.242 5.242 21 H 0.293 0.707 22 N -0.180 5.180 23 C 0.081 3.919 24 C -0.113 4.113 25 C -0.114 4.114 26 C -0.144 4.144 27 C -0.124 4.124 28 C -0.160 4.160 29 H 0.114 0.886 30 H 0.145 0.855 31 H 0.155 0.845 32 H 0.252 0.748 33 H 0.156 0.844 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.094 -16.379 -5.717 19.587 hybrid contribution 0.733 -0.917 -0.685 1.359 sum 9.826 -17.296 -6.402 20.897 Atomic orbital electron populations 1.70422 1.08366 1.34453 1.27575 1.27489 0.95698 1.05084 0.91172 0.83511 0.75502 0.72798 0.78543 1.19827 1.19758 1.19523 1.20921 1.01990 0.91342 1.31687 0.87423 1.17974 0.89955 0.92420 0.90472 1.21478 0.99052 0.96837 1.00797 1.25116 1.04774 0.97706 1.06379 1.83012 1.29339 1.11300 1.49932 1.22381 1.12755 0.93915 1.21812 1.17701 0.83647 0.82514 0.80945 1.90764 1.49742 1.49147 1.51912 1.69643 1.17193 1.27033 1.22078 1.20997 0.90186 0.77591 0.89776 1.72255 1.08049 1.29057 1.14962 1.26166 0.96188 0.78733 0.93081 1.45131 1.25626 1.09371 1.44067 0.70741 1.44576 1.24886 1.05483 1.43076 1.17285 0.98722 0.82657 0.93211 1.21182 0.98591 0.97325 0.94166 1.21084 0.97654 0.92489 1.00214 1.21225 1.00378 0.99654 0.93115 1.20919 0.98686 0.96243 0.96519 1.20973 1.02372 0.94505 0.98103 0.88598 0.85525 0.84499 0.74765 0.84429 0.84946 0.85589 0.85492 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.18 12.49 55.57 0.69 -20.49 16 2 C 0.03 0.76 5.24 -17.28 -0.09 0.67 16 3 Si 1.07 22.83 29.98 -169.99 -5.10 17.73 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.43 -12.55 8.44 -37.96 -0.32 -12.87 16 8 H 0.11 3.33 6.13 -52.49 -0.32 3.01 16 9 C 0.10 2.98 5.40 -106.21 -0.57 2.40 16 10 C -0.15 -3.82 8.19 -39.11 -0.32 -4.14 16 11 C -0.20 -4.79 11.06 28.84 0.32 -4.47 16 12 S 0.01 0.16 22.98 -107.50 -2.47 -2.31 16 13 C -0.39 -11.18 6.52 -35.72 -0.23 -11.41 16 14 C 0.56 15.96 7.70 -13.13 -0.10 15.86 16 15 O -0.53 -16.38 13.02 4.86 0.06 -16.31 16 16 N -0.60 -14.95 9.46 -14.19 -0.13 -15.08 16 17 C 0.57 11.85 8.17 -321.35 -2.62 9.23 16 18 N -0.51 -9.83 9.19 -14.86 -0.14 -9.96 16 19 C 0.35 3.83 13.05 -90.11 -1.18 2.65 16 20 N -0.51 -4.81 7.25 29.64 0.22 -4.60 16 21 H 0.45 1.97 8.96 -182.28 -1.63 0.34 16 22 N -0.38 -5.66 3.76 -11.42 -0.04 -5.70 16 23 C 0.17 2.38 6.29 -83.73 -0.53 1.85 16 24 C -0.09 -1.29 9.27 -39.38 -0.37 -1.66 16 25 C -0.10 -1.07 10.04 -39.61 -0.40 -1.47 16 26 C -0.12 -1.17 10.04 -39.54 -0.40 -1.56 16 27 C -0.11 -0.96 10.04 -39.61 -0.40 -1.35 16 28 C -0.14 -1.47 9.91 -39.38 -0.39 -1.86 16 29 H 0.30 8.28 6.23 -40.82 -0.25 8.03 16 30 H 0.13 3.20 6.79 -52.49 -0.36 2.85 16 31 H 0.14 2.68 8.06 -52.49 -0.42 2.26 16 32 H 0.24 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.14 2.27 7.73 -52.49 -0.41 1.86 16 34 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 343.00 15.07 5.17 5.17 Total: -1.00 -40.43 343.00 -13.64 -54.07 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.30 Total: 5.62 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -7.59 Total: -8.13 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.60 Total: -55.83 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.06 Total: -16.31 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.10 Total: 17.73 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.47 Total: -2.31 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -40.43 -13.64 -54.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457404696.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.707 kcal (2) G-P(sol) polarization free energy of solvation -40.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds