Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86803 * 119.99652 * 2 1 4 4 H 1.48496 * 109.47107 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46896 * 120.00280 * 3 2 1 6 6 H 1.48503 * 109.46994 * 239.99926 * 3 2 1 7 7 C 1.40306 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00452 * 159.50916 * 7 2 1 9 9 C 1.40470 * 119.99895 * 339.51782 * 7 2 1 10 10 C 1.44265 * 123.72038 * 335.41007 * 9 7 2 11 11 C 1.32676 * 114.43538 * 179.82867 * 10 9 7 12 12 S 1.75478 * 111.37491 * 0.43227 * 11 10 9 13 13 C 1.39527 * 123.72774 * 155.71174 * 9 7 2 14 14 C 1.46614 * 125.22550 * 359.93857 * 13 9 7 15 15 O 1.22060 * 120.00307 * 0.02562 * 14 13 9 16 16 N 1.34220 * 119.99731 * 179.97438 * 14 13 9 17 17 C 1.32697 * 120.00026 * 179.97438 * 16 14 13 18 18 N 1.34349 * 126.13847 * 359.69564 * 17 16 14 19 19 C 1.30702 * 110.12198 * 179.81658 * 18 17 16 20 20 N 1.35148 * 109.45058 * 0.44344 * 19 18 17 21 21 H 0.96997 * 126.59891 * 179.70073 * 20 19 18 22 22 N 1.37544 * 126.14025 * 179.97438 * 17 16 14 23 23 C 1.39787 * 127.04850 * 359.97438 * 22 17 16 24 24 C 1.38908 * 120.07627 * 314.73362 * 23 22 17 25 25 C 1.38102 * 119.92506 * 179.71973 * 24 23 22 26 26 C 1.38291 * 120.07263 * 0.55057 * 25 24 23 27 27 C 1.38293 * 120.14707 * 359.72035 * 26 25 24 28 28 C 1.38101 * 120.07429 * 359.97438 * 27 26 25 29 29 H 0.97002 * 119.99702 * 174.00156 * 1 2 3 30 30 H 1.07995 * 122.78183 * 0.04324 * 10 9 7 31 31 H 1.07997 * 124.31570 * 180.21319 * 11 10 9 32 32 H 1.08003 * 125.27066 * 180.18177 * 19 18 17 33 33 H 1.08000 * 120.03466 * 359.96937 * 24 23 22 34 34 H 1.08003 * 119.96453 * 180.26780 * 25 24 23 35 35 H 1.07995 * 119.92138 * 179.70311 * 26 25 24 36 36 H 1.07997 * 119.95594 * 180.02562 * 27 26 25 37 37 H 1.07997 * 120.03565 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 1.2754 2.7464 0.0006 5 1 3.0942 1.6965 1.2125 6 1 3.0942 1.6965 -1.2125 7 6 2.0081 -1.2150 0.0005 8 1 3.0369 -1.2447 -0.3268 9 6 1.3725 -2.3929 0.4267 10 6 0.2463 -2.4141 1.3281 11 6 -0.2123 -3.6279 1.6051 12 16 0.7189 -4.8666 0.7819 13 6 1.7643 -3.6719 0.0299 14 6 2.8773 -3.9724 -0.8760 15 8 3.5441 -3.0643 -1.3459 16 7 3.1636 -5.2460 -1.1878 17 6 4.1706 -5.5180 -2.0081 18 7 4.9763 -4.6197 -2.5985 19 6 5.8641 -5.2299 -3.3386 20 7 5.6669 -6.5651 -3.2690 21 1 6.1811 -7.2502 -3.7242 22 7 4.5734 -6.7700 -2.4107 23 6 4.0107 -7.9951 -2.0413 24 6 3.6947 -8.2433 -0.7116 25 6 3.1334 -9.4526 -0.3510 26 6 2.8965 -10.4201 -1.3102 27 6 3.2151 -10.1783 -2.6341 28 6 3.7708 -8.9689 -3.0024 29 1 -0.4850 -0.8355 -0.0878 30 1 -0.1897 -1.5162 1.7403 31 1 -1.0495 -3.8283 2.2572 32 1 6.6333 -4.7424 -3.9193 33 1 3.8839 -7.4900 0.0387 34 1 2.8835 -9.6446 0.6820 35 1 2.4620 -11.3667 -1.0248 36 1 3.0284 -10.9360 -3.3807 37 1 4.0190 -8.7806 -4.0365 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001457404696.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = 126.365116 kcal Electronic energy + Delta-G solvation = -25704.016486 eV Core-core repulsion = 21961.389088 eV Total energy + Delta-G solvation = -3742.627398 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.073 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.35639 -40.09164 -39.68262 -38.12726 -35.31746 -34.98570 -34.79229 -32.18626 -31.96793 -30.80896 -30.23981 -27.78906 -25.17139 -24.54015 -24.10321 -23.07764 -22.89899 -21.02335 -20.77979 -20.00879 -18.50233 -18.07266 -17.63277 -17.30095 -17.06197 -16.65675 -16.14465 -15.92114 -15.62571 -15.50468 -15.12560 -15.06062 -14.72249 -14.45965 -14.32772 -13.91231 -13.68601 -13.21421 -12.73408 -12.67043 -12.43556 -12.38066 -12.09077 -11.98880 -11.83005 -11.80281 -11.56415 -11.52447 -11.15197 -10.81129 -10.03207 -9.95496 -9.79661 -9.61596 -9.19425 -9.07227 -8.80898 -6.45034 -0.37277 0.04298 0.27121 0.33689 0.50915 1.33696 1.41744 1.46514 1.70470 1.79576 1.87942 2.07098 2.29031 2.48451 2.82398 2.97955 3.43724 3.45626 3.56284 3.81687 3.89945 4.15922 4.21158 4.27406 4.30511 4.41302 4.56589 4.68642 4.79397 5.00082 5.13678 5.25456 5.33795 5.37966 5.41671 5.43566 5.50498 5.76710 5.88780 5.92772 6.07564 6.40439 6.56530 6.58757 6.78914 7.04608 7.86452 8.04613 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.003646 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.436081 B = 7677.259981 C = 9362.722635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.001 3.999 3 Si 1.123 2.877 4 H -0.254 1.254 5 H -0.259 1.259 6 H -0.269 1.269 7 C -0.473 4.473 8 H 0.076 0.924 9 C 0.079 3.921 10 C -0.173 4.173 11 C -0.185 4.185 12 S 0.049 5.951 13 C -0.434 4.434 14 C 0.549 3.451 15 O -0.580 6.580 16 N -0.653 5.653 17 C 0.572 3.428 18 N -0.593 5.593 19 C 0.390 3.610 20 N -0.471 5.471 21 H 0.474 0.526 22 N -0.371 5.371 23 C 0.136 3.864 24 C -0.118 4.118 25 C -0.104 4.104 26 C -0.112 4.112 27 C -0.097 4.097 28 C -0.130 4.130 29 H 0.287 0.713 30 H 0.128 0.872 31 H 0.184 0.816 32 H 0.305 0.695 33 H 0.099 0.901 34 H 0.144 0.856 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.912 -20.724 -8.049 24.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.217 4.217 3 Si 0.938 3.062 4 H -0.178 1.178 5 H -0.183 1.183 6 H -0.194 1.194 7 C -0.504 4.504 8 H 0.094 0.906 9 C 0.068 3.932 10 C -0.207 4.207 11 C -0.320 4.320 12 S 0.308 5.692 13 C -0.553 4.553 14 C 0.344 3.656 15 O -0.464 6.464 16 N -0.413 5.413 17 C 0.213 3.787 18 N -0.329 5.329 19 C 0.097 3.903 20 N -0.200 5.200 21 H 0.328 0.672 22 N -0.169 5.169 23 C 0.045 3.955 24 C -0.139 4.139 25 C -0.123 4.123 26 C -0.131 4.131 27 C -0.116 4.116 28 C -0.151 4.151 29 H 0.100 0.900 30 H 0.146 0.854 31 H 0.201 0.799 32 H 0.320 0.680 33 H 0.117 0.883 34 H 0.162 0.838 35 H 0.179 0.821 36 H 0.184 0.816 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.107 -19.996 -7.627 23.668 hybrid contribution 0.707 -0.427 -0.350 0.898 sum 10.814 -20.424 -7.977 24.448 Atomic orbital electron populations 1.70519 1.08499 1.33455 1.29179 1.28828 0.95838 1.07484 0.89567 0.82963 0.74809 0.69346 0.79058 1.17795 1.18315 1.19393 1.20862 1.01180 0.93296 1.35022 0.90626 1.18456 0.91133 0.92762 0.90863 1.21371 0.99490 0.98000 1.01797 1.25616 1.04732 0.96439 1.05201 1.82615 1.27829 1.10033 1.48773 1.22993 1.14097 0.95517 1.22652 1.18065 0.83246 0.83808 0.80496 1.90687 1.51327 1.50578 1.53797 1.69455 1.21180 1.24150 1.26531 1.21148 0.89393 0.79703 0.88486 1.72179 1.11095 1.30858 1.18729 1.27491 0.94434 0.78439 0.89985 1.45364 1.23190 1.10309 1.41180 0.67242 1.44757 1.25161 1.04668 1.42358 1.17635 1.01129 0.82775 0.93970 1.21100 1.00740 0.97968 0.94103 1.21315 0.97406 0.91891 1.01691 1.21673 0.98467 1.00115 0.92804 1.21429 0.96685 0.96174 0.97273 1.21262 1.01419 0.93952 0.98419 0.90003 0.85406 0.79929 0.68044 0.88250 0.83777 0.82108 0.81555 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -44.68 12.49 21.89 0.27 -44.40 16 2 C 0.00 0.05 5.24 85.37 0.45 0.50 16 3 Si 1.12 47.85 29.98 68.60 2.06 49.90 16 4 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 7 C -0.47 -29.86 8.44 23.32 0.20 -29.67 16 8 H 0.08 5.15 6.13 -2.91 -0.02 5.14 16 9 C 0.08 4.89 5.40 -20.89 -0.11 4.78 16 10 C -0.17 -9.31 8.19 22.63 0.19 -9.13 16 11 C -0.19 -8.66 11.06 66.65 0.74 -7.93 16 12 S 0.05 2.46 22.98 -56.49 -1.30 1.16 16 13 C -0.43 -26.60 6.52 24.77 0.16 -26.44 16 14 C 0.55 34.10 7.70 86.52 0.67 34.76 16 15 O -0.58 -38.68 13.02 -5.51 -0.07 -38.76 16 16 N -0.65 -34.53 9.46 -317.18 -3.00 -37.53 16 17 C 0.57 24.65 8.17 260.98 2.13 26.78 16 18 N -0.59 -23.33 9.19 -200.93 -1.85 -25.18 16 19 C 0.39 7.40 13.05 180.17 2.35 9.75 16 20 N -0.47 -7.38 7.25 -60.13 -0.44 -7.81 16 21 H 0.47 1.90 8.96 -213.05 -1.91 -0.01 16 22 N -0.37 -10.87 3.76 -190.04 -0.72 -11.59 16 23 C 0.14 3.59 6.29 38.19 0.24 3.83 16 24 C -0.12 -3.42 9.27 22.40 0.21 -3.22 16 25 C -0.10 -2.22 10.04 22.25 0.22 -2.00 16 26 C -0.11 -1.66 10.04 22.30 0.22 -1.44 16 27 C -0.10 -1.31 10.04 22.25 0.22 -1.09 16 28 C -0.13 -2.31 9.91 22.40 0.22 -2.09 16 29 H 0.29 16.70 6.23 -92.71 -0.58 16.13 16 30 H 0.13 6.74 6.79 -2.91 -0.02 6.72 16 31 H 0.18 6.73 8.06 -2.91 -0.02 6.71 16 32 H 0.30 1.01 8.06 -2.91 -0.02 0.99 16 33 H 0.10 3.62 7.73 -2.91 -0.02 3.60 16 34 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 36 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 37 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -102.81 343.00 2.50 -100.32 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -0.57 Total: 16.46 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 8.10 Total: -2.58 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -5.73 Total: -126.51 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -0.07 Total: -38.76 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.06 Total: 49.90 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.30 Total: 1.16 kcal Total: -102.81 2.50 -100.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457404696.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.681 kcal (2) G-P(sol) polarization free energy of solvation -102.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds