Wall clock time and date at job start Sat Apr 11 2020 05:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99899 * 2 1 4 4 C 1.53006 * 109.46942 * 269.99662 * 3 2 1 5 5 H 1.08998 * 109.46695 * 60.00642 * 4 3 2 6 6 O 1.42896 * 109.47381 * 300.00117 * 4 3 2 7 7 C 1.53005 * 109.46934 * 180.02562 * 4 3 2 8 8 N 1.46500 * 109.46767 * 185.00506 * 7 4 3 9 9 C 1.36939 * 120.00075 * 180.02562 * 8 7 4 10 10 H 1.08005 * 119.99518 * 359.97438 * 9 8 7 11 11 C 1.38810 * 120.00373 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99647 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00186 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46901 * 0.02562 * 13 11 9 15 15 H 1.48492 * 109.46906 * 120.00098 * 13 11 9 16 16 H 1.48501 * 109.47403 * 240.00192 * 13 11 9 17 17 C 1.34777 * 120.00136 * 179.97438 * 2 1 3 18 18 O 1.21735 * 120.00254 * 179.46600 * 17 2 1 19 19 C 1.46399 * 119.99689 * 359.46026 * 17 2 1 20 20 C 1.35250 * 124.95528 * 188.33005 * 19 17 2 21 21 C 1.39888 * 115.35217 * 180.02562 * 20 19 17 22 22 S 1.77329 * 137.31427 * 179.97438 * 21 20 19 23 23 C 1.75293 * 91.42341 * 180.02562 * 22 21 20 24 24 C 1.32206 * 110.47911 * 359.97438 * 23 22 21 25 25 C 1.37476 * 113.46467 * 359.97438 * 21 20 19 26 26 S 1.75316 * 124.96118 * 8.03125 * 19 17 2 27 27 H 1.08996 * 109.47382 * 96.42964 * 1 2 3 28 28 H 1.08998 * 109.46913 * 216.42855 * 1 2 3 29 29 H 1.09001 * 109.46903 * 336.42810 * 1 2 3 30 30 H 1.08993 * 109.47349 * 29.99694 * 3 2 1 31 31 H 1.09001 * 109.47398 * 150.00409 * 3 2 1 32 32 H 0.96700 * 113.99951 * 299.99996 * 6 4 3 33 33 H 1.08999 * 109.47325 * 304.99852 * 7 4 3 34 34 H 1.09000 * 109.47291 * 65.00497 * 7 4 3 35 35 H 0.97003 * 120.00567 * 359.97438 * 8 7 4 36 36 H 0.97006 * 119.99737 * 180.02562 * 12 11 9 37 37 H 1.07997 * 122.32648 * 359.97438 * 20 19 17 38 38 H 1.08000 * 124.76423 * 180.02562 * 23 22 21 39 39 H 1.08003 * 122.08556 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 1 1.5001 1.8407 -1.9563 6 8 3.2248 0.7145 -2.1162 7 6 3.2181 3.0351 -1.4426 8 7 3.3579 3.5182 -2.8185 9 6 4.0131 4.6945 -3.0679 10 1 4.4263 5.2663 -2.2502 11 6 4.1461 5.1521 -4.3717 12 7 3.6420 4.4554 -5.3682 13 14 5.0392 6.7571 -4.7118 14 1 5.5079 7.3438 -3.4307 15 1 6.2058 6.4972 -5.5929 16 1 4.1142 7.7059 -5.3822 17 6 2.1389 -1.1672 0.0005 18 8 3.3562 -1.1672 -0.0093 19 6 1.4069 -2.4350 0.0130 20 6 1.9706 -3.6537 0.1753 21 6 1.0808 -4.7328 0.1538 22 16 1.1685 -6.4978 0.3016 23 6 -0.5673 -6.6442 0.1063 24 6 -1.1172 -5.4523 -0.0514 25 6 -0.2291 -4.3587 -0.0307 26 16 -0.3291 -2.5946 -0.1727 27 1 -0.3634 -0.1151 -1.0211 28 1 -0.3633 -0.8268 0.6102 29 1 -0.3633 0.9419 0.4110 30 1 1.6084 2.0284 0.5137 31 1 3.1499 1.1384 0.5138 32 1 4.0873 0.5460 -1.7126 33 1 2.6711 3.7709 -0.8531 34 1 4.2063 2.8837 -1.0084 35 1 2.9871 3.0045 -3.5531 36 1 3.7353 4.7750 -6.2793 37 1 3.0339 -3.7846 0.3112 38 1 -1.1114 -7.5771 0.1145 39 1 -2.1810 -5.3247 -0.1875 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486284707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:42 Heat of formation + Delta-G solvation = -3.064813 kcal Electronic energy + Delta-G solvation = -24006.176521 eV Core-core repulsion = 20361.087821 eV Total energy + Delta-G solvation = -3645.088700 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.18730 -38.84055 -37.27623 -35.44309 -34.73979 -33.96945 -31.35282 -30.06610 -28.52825 -27.25844 -25.91495 -24.73125 -23.11797 -22.15160 -21.30939 -20.91278 -18.75937 -18.55097 -17.14034 -17.01037 -16.60992 -16.43842 -16.09868 -15.25811 -15.03408 -14.75692 -14.46542 -14.31041 -14.02887 -13.78777 -13.62067 -13.44648 -13.29961 -12.97750 -12.78726 -12.45050 -12.23404 -12.13952 -11.55741 -11.51477 -11.41115 -10.92294 -10.81738 -10.73968 -10.68252 -10.17942 -10.10469 -9.76437 -9.69167 -9.59401 -8.88226 -8.83377 -8.61812 -7.94787 -6.89828 -5.72926 -3.02332 -0.15555 0.77205 1.27134 1.41883 1.49376 1.86902 2.14441 2.75060 3.04211 3.45005 3.50068 3.52793 4.19253 4.47992 4.58263 4.60673 4.65937 4.86517 4.94921 5.02716 5.13048 5.25360 5.27086 5.35569 5.45750 5.54420 5.56603 5.64177 5.68119 5.71097 5.84286 6.00241 6.20967 6.35191 6.53551 6.75118 7.12095 7.71278 7.97075 8.21977 8.45331 9.56614 10.14706 10.50185 11.49558 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.028452 B = 0.002105 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.878618 B =13299.332704 C =13419.798649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.602 5.602 3 C 0.087 3.913 4 C 0.085 3.915 5 H 0.097 0.903 6 O -0.547 6.547 7 C 0.126 3.874 8 N -0.726 5.726 9 C -0.241 4.241 10 H 0.070 0.930 11 C -0.014 4.014 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.292 1.292 17 C 0.594 3.406 18 O -0.518 6.518 19 C -0.229 4.229 20 C -0.015 4.015 21 C -0.178 4.178 22 S 0.140 5.860 23 C -0.191 4.191 24 C -0.096 4.096 25 C -0.186 4.186 26 S 0.209 5.791 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.375 0.625 33 H 0.025 0.975 34 H 0.022 0.978 35 H 0.388 0.612 36 H 0.255 0.745 37 H 0.154 0.846 38 H 0.173 0.827 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.261 -22.161 16.452 30.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.334 5.334 3 C -0.036 4.036 4 C 0.024 3.976 5 H 0.114 0.886 6 O -0.352 6.352 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.373 4.373 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.219 1.219 17 C 0.382 3.618 18 O -0.396 6.396 19 C -0.351 4.351 20 C -0.051 4.051 21 C -0.303 4.303 22 S 0.402 5.598 23 C -0.329 4.329 24 C -0.129 4.129 25 C -0.312 4.312 26 S 0.475 5.525 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.222 0.778 33 H 0.042 0.958 34 H 0.039 0.961 35 H 0.223 0.777 36 H 0.064 0.936 37 H 0.172 0.828 38 H 0.191 0.809 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.077 -22.058 16.092 30.274 hybrid contribution 0.626 0.694 -0.194 0.954 sum -12.452 -21.365 15.897 29.397 Atomic orbital electron populations 1.22082 0.80059 1.03278 1.03152 1.47469 1.06501 1.06056 1.73366 1.22376 0.98357 0.83740 0.99148 1.22505 0.95875 0.88415 0.90758 0.88559 1.86553 1.33129 1.58833 1.56735 1.21237 0.96815 0.92398 0.89793 1.42259 1.68021 1.25320 1.01418 1.19267 1.28029 0.97782 0.92190 0.91198 1.24770 1.01547 0.99074 0.95637 1.69696 1.50311 1.39204 0.98591 0.86108 0.79043 0.83226 0.77745 1.20576 1.21844 1.21873 1.16741 0.86676 0.81842 0.76576 1.90821 1.12461 1.86537 1.49753 1.23904 0.97590 0.97598 1.15980 1.19755 1.00624 0.88074 0.96611 1.22688 0.95747 0.98493 1.13409 1.84238 1.04253 0.97333 1.73992 1.25319 0.97667 1.01850 1.08106 1.19389 1.00329 0.89507 1.03635 1.24141 0.95729 1.01963 1.09342 1.84652 1.01959 0.93651 1.72201 0.90994 0.90683 0.88523 0.89168 0.89093 0.77771 0.95752 0.96052 0.77741 0.93556 0.82841 0.80949 0.83821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 8.96 59.85 0.54 1.05 16 2 N -0.60 -7.28 2.83 -183.23 -0.52 -7.80 16 3 C 0.09 1.10 5.19 -4.04 -0.02 1.08 16 4 C 0.09 1.42 3.27 -26.73 -0.09 1.33 16 5 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 6 O -0.55 -10.47 12.08 -44.57 -0.54 -11.01 16 7 C 0.13 2.52 5.90 -4.04 -0.02 2.50 16 8 N -0.73 -18.96 5.55 -59.91 -0.33 -19.29 16 9 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 10 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 11 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 12 N -0.93 -28.98 13.06 55.49 0.72 -28.25 16 13 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 16 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 17 C 0.59 8.39 7.15 -12.98 -0.09 8.30 16 18 O -0.52 -8.79 15.12 -4.18 -0.06 -8.85 16 19 C -0.23 -2.78 6.16 -37.36 -0.23 -3.01 16 20 C -0.02 -0.18 9.89 -40.03 -0.40 -0.58 16 21 C -0.18 -1.90 6.91 -39.24 -0.27 -2.18 16 22 S 0.14 1.16 23.34 -107.50 -2.51 -1.35 16 23 C -0.19 -1.29 11.10 28.81 0.32 -0.97 16 24 C -0.10 -0.74 10.17 -40.50 -0.41 -1.15 16 25 C -0.19 -1.84 6.95 -38.86 -0.27 -2.11 16 26 S 0.21 1.93 18.01 -107.50 -1.94 -0.01 16 27 H 0.07 0.62 7.78 -51.93 -0.40 0.21 16 28 H 0.08 0.56 4.50 -22.05 -0.10 0.46 16 29 H 0.10 0.60 7.82 -51.93 -0.41 0.20 16 30 H 0.09 0.90 7.85 -51.93 -0.41 0.49 16 31 H 0.09 1.21 7.43 -51.93 -0.39 0.83 16 32 H 0.37 6.75 8.43 45.56 0.38 7.13 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.39 10.96 7.67 -40.82 -0.31 10.65 16 36 H 0.25 7.62 8.31 -40.82 -0.34 7.29 16 37 H 0.15 1.76 8.01 -52.49 -0.42 1.34 16 38 H 0.17 0.65 8.06 -52.49 -0.42 0.22 16 39 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 354.16 15.07 5.34 5.34 Total: -1.00 -35.29 354.16 -9.77 -45.06 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -3.71 Total: 11.72 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.20 Total: -3.32 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.13 Total: -55.34 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.60 Total: -19.86 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -4.45 Total: -1.36 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.29 -9.77 -45.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486284707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.990 kcal (2) G-P(sol) polarization free energy of solvation -35.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds