Wall clock time and date at job start Sat Apr 11 2020 05:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32771 * 124.71135 * 2 1 4 4 C 1.44420 * 113.08250 * 180.17758 * 3 2 1 5 5 C 1.47186 * 123.46028 * 179.80089 * 4 3 2 6 6 O 1.21640 * 120.00014 * 6.34800 * 5 4 3 7 7 N 1.34777 * 120.00152 * 186.34269 * 5 4 3 8 8 C 1.47067 * 136.05865 * 176.01016 * 7 5 4 9 9 C 1.53500 * 87.98680 * 207.08430 * 8 7 5 10 10 N 1.46495 * 114.21050 * 220.34621 * 9 8 7 11 11 C 1.34779 * 120.00134 * 205.00190 * 10 9 8 12 12 O 1.21285 * 119.99986 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00050 * 179.97438 * 11 10 9 14 14 S 1.80997 * 109.47073 * 179.97438 * 13 11 10 15 15 C 1.76204 * 100.00124 * 180.02562 * 14 13 11 16 16 H 1.08009 * 119.99671 * 359.97438 * 15 14 13 17 17 C 1.38793 * 120.00205 * 179.97438 * 15 14 13 18 18 N 1.31626 * 120.00324 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99928 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47232 * 89.99650 * 19 17 15 21 21 H 1.48502 * 109.46973 * 209.99753 * 19 17 15 22 22 H 1.48499 * 109.46999 * 329.99532 * 19 17 15 23 23 C 1.47076 * 136.05841 * 355.95790 * 7 5 4 24 24 C 1.36012 * 113.08032 * 359.53786 * 4 3 2 25 25 S 1.70453 * 110.81414 * 0.24453 * 24 4 3 26 26 H 1.09003 * 109.46972 * 180.27997 * 1 2 3 27 27 H 1.08998 * 109.47256 * 300.27770 * 1 2 3 28 28 H 1.08997 * 109.47172 * 60.27654 * 1 2 3 29 29 H 1.08005 * 123.46015 * 359.97438 * 3 2 1 30 30 H 1.09000 * 113.47132 * 321.86408 * 8 7 5 31 31 H 1.09001 * 113.46804 * 92.30564 * 8 7 5 32 32 H 1.09006 * 114.20553 * 87.51710 * 9 8 7 33 33 H 0.97005 * 120.00301 * 24.99577 * 10 9 8 34 34 H 1.08996 * 109.47582 * 300.00211 * 13 11 10 35 35 H 1.09007 * 109.47137 * 60.00064 * 13 11 10 36 36 H 0.96997 * 120.00538 * 180.02562 * 18 17 15 37 37 H 1.08996 * 113.46905 * 267.69915 * 23 7 5 38 38 H 1.08999 * 113.46300 * 38.07758 * 23 7 5 39 39 H 1.07996 * 124.59682 * 180.20414 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6776 0.8003 -0.0041 5 6 4.7200 1.8395 -0.0092 6 8 4.4119 3.0105 0.1064 7 7 6.0158 1.4935 -0.1418 8 6 7.2956 2.2079 -0.2628 9 6 7.8385 0.9946 -1.0304 10 7 9.2168 0.6349 -0.6884 11 6 9.9798 -0.0315 -1.5774 12 8 9.5250 -0.3338 -2.6604 13 6 11.3978 -0.4009 -1.2259 14 16 12.1536 -1.2822 -2.6144 15 6 13.7569 -1.5843 -1.9489 16 1 14.0019 -1.2424 -0.9541 17 6 14.7050 -2.2617 -2.7029 18 7 15.9028 -2.4870 -2.2060 19 14 14.2816 -2.8525 -4.4238 20 1 14.6183 -1.7926 -5.4079 21 1 15.0599 -4.0792 -4.7315 22 1 12.8298 -3.1554 -4.4998 23 6 6.7725 0.2353 -0.2282 24 6 3.9477 -0.5327 0.0029 25 16 2.5064 -1.4427 0.0077 26 1 -0.3633 -1.0277 0.0050 27 1 -0.3634 0.5181 0.8875 28 1 -0.3633 0.5095 -0.8924 29 1 1.8615 2.0940 -0.0004 30 1 7.2325 3.1120 -0.8685 31 1 7.7919 2.3743 0.6933 32 1 7.6524 1.0251 -2.1040 33 1 9.5805 0.8765 0.1779 34 1 11.9678 0.5042 -1.0160 35 1 11.3983 -1.0430 -0.3450 36 1 16.5656 -2.9601 -2.7331 37 1 7.1295 -0.1238 0.7370 38 1 6.2641 -0.5383 -0.8037 39 1 4.9407 -0.9572 0.0046 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498097587.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:52 Heat of formation + Delta-G solvation = 4.475279 kcal Electronic energy + Delta-G solvation = -23127.371408 eV Core-core repulsion = 19482.609670 eV Total energy + Delta-G solvation = -3644.761738 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.11827 -39.42176 -38.26550 -37.19128 -33.99256 -32.67865 -32.48520 -30.24976 -28.60230 -27.38720 -26.25790 -25.67437 -24.81408 -22.18810 -20.79289 -20.27100 -19.44449 -17.94706 -17.70339 -17.35758 -16.92284 -16.40591 -16.10021 -15.27067 -15.11584 -14.95775 -14.71740 -14.39232 -14.14472 -13.92031 -13.55993 -13.49761 -13.26222 -13.08302 -12.84062 -12.75692 -12.67372 -12.48488 -12.36289 -12.19071 -11.40888 -11.35714 -11.31488 -11.05042 -10.68703 -10.30214 -9.90806 -9.68887 -9.26853 -9.23570 -9.16433 -9.04465 -8.81460 -8.57036 -6.98198 -6.33375 -4.06089 0.34515 1.08063 1.48090 1.57641 2.22668 2.71142 2.73672 2.97298 3.26227 3.30467 3.46170 3.57956 3.89474 4.09841 4.28545 4.32660 4.45348 4.59547 4.62669 4.74003 4.81954 4.89804 4.96560 5.03898 5.05733 5.06931 5.15555 5.23955 5.30169 5.38481 5.53370 5.66161 5.66782 5.68500 5.92395 5.93639 6.29149 7.22859 7.40091 7.78008 7.89422 8.29050 8.36929 9.12561 10.75743 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.022719 B = 0.001939 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.128608 B =14438.579124 C =15224.525196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.203 4.203 3 C -0.092 4.092 4 C -0.146 4.146 5 C 0.612 3.388 6 O -0.534 6.534 7 N -0.639 5.639 8 C 0.098 3.902 9 C 0.119 3.881 10 N -0.724 5.724 11 C 0.535 3.465 12 O -0.513 6.513 13 C -0.125 4.125 14 S -0.141 6.141 15 C -0.523 4.523 16 H 0.089 0.911 17 C 0.096 3.904 18 N -0.879 5.879 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C 0.073 3.927 24 C -0.219 4.219 25 S 0.190 5.810 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.153 0.847 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.134 0.866 33 H 0.404 0.596 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.271 0.729 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.256 4.645 8.121 29.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.320 4.320 3 C -0.121 4.121 4 C -0.164 4.164 5 C 0.402 3.598 6 O -0.412 6.412 7 N -0.375 5.375 8 C -0.025 4.025 9 C 0.012 3.988 10 N -0.378 5.378 11 C 0.321 3.679 12 O -0.387 6.387 13 C -0.276 4.276 14 S 0.086 5.914 15 C -0.670 4.670 16 H 0.107 0.893 17 C -0.113 4.113 18 N -0.515 5.515 19 Si 0.681 3.319 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 C -0.051 4.051 24 C -0.357 4.357 25 S 0.456 5.544 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.171 0.829 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.152 0.848 33 H 0.239 0.761 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -29.539 3.202 6.374 30.388 hybrid contribution 1.409 1.603 1.115 2.408 sum -28.130 4.805 7.489 29.504 Atomic orbital electron populations 1.20341 0.87270 1.03050 1.03334 1.24417 1.00642 0.96057 1.10859 1.20966 0.90108 0.99847 1.01151 1.20079 0.93885 0.92153 1.10305 1.17043 0.79491 0.87647 0.75660 1.90812 1.80905 1.19176 1.50278 1.49024 1.04200 1.11140 1.73145 1.23364 0.81129 0.97540 1.00488 1.22649 0.81018 0.93960 1.01201 1.45791 1.12259 1.60099 1.19663 1.20384 0.87203 0.76368 0.83901 1.90719 1.73602 1.51984 1.22389 1.23289 0.94100 1.04899 1.05301 1.84817 1.13967 1.72065 1.20589 1.22302 0.95504 1.43504 1.05728 0.89332 1.24712 0.93949 0.94217 0.98406 1.69930 1.03943 1.39781 1.37887 0.86739 0.81427 0.79398 0.84304 1.19184 1.19918 1.15938 1.23870 0.90933 0.89220 1.01114 1.26143 1.05290 0.97769 1.06496 1.83128 0.93571 1.08336 1.69322 0.91262 0.90369 0.90338 0.82926 0.89225 0.89051 0.84794 0.76060 0.88237 0.88235 0.91891 0.88711 0.89340 0.80546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.35 36.01 0.37 -0.01 16 2 C -0.20 -1.51 6.44 -36.18 -0.23 -1.74 16 3 C -0.09 -0.86 9.96 -39.02 -0.39 -1.25 16 4 C -0.15 -1.52 5.98 -104.63 -0.63 -2.14 16 5 C 0.61 7.52 8.03 -12.63 -0.10 7.42 16 6 O -0.53 -8.30 17.58 5.24 0.09 -8.21 16 7 N -0.64 -6.36 3.69 -186.58 -0.69 -7.04 16 8 C 0.10 0.82 8.39 -8.50 -0.07 0.75 16 9 C 0.12 1.10 4.61 -67.81 -0.31 0.79 16 10 N -0.72 -7.28 5.39 -53.61 -0.29 -7.57 16 11 C 0.54 8.25 7.85 -10.98 -0.09 8.16 16 12 O -0.51 -9.95 15.46 5.55 0.09 -9.86 16 13 C -0.13 -2.19 6.16 36.01 0.22 -1.96 16 14 S -0.14 -3.39 18.55 -107.50 -1.99 -5.38 16 15 C -0.52 -14.56 10.04 30.94 0.31 -14.25 16 16 H 0.09 2.57 8.03 -52.48 -0.42 2.15 16 17 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 18 N -0.88 -25.96 13.97 55.49 0.78 -25.19 16 19 Si 0.86 21.23 27.74 -169.99 -4.72 16.52 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16 23 C 0.07 0.58 6.67 -8.50 -0.06 0.52 16 24 C -0.22 -1.83 10.03 29.93 0.30 -1.53 16 25 S 0.19 1.31 23.00 -107.50 -2.47 -1.17 16 26 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.15 1.39 8.06 -52.48 -0.42 0.96 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.13 1.50 7.46 -51.93 -0.39 1.11 16 33 H 0.40 2.84 8.76 -40.82 -0.36 2.49 16 34 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 35 H 0.10 1.59 8.14 -51.91 -0.42 1.17 16 36 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.67 6.09 -51.93 -0.32 0.35 16 39 H 0.18 1.23 4.62 -52.49 -0.24 0.99 16 LS Contribution 362.75 15.07 5.47 5.47 Total: -1.00 -35.76 362.75 -9.19 -44.95 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -4.68 Total: 0.09 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -0.77 Total: -2.60 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: -0.20 Total: -39.80 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.18 Total: -18.07 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.72 Total: 16.52 kcal Atomic # 16 Polarization: -2.08 SS G_CDS: -4.47 Total: -6.55 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.76 -9.19 -44.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498097587.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.421 kcal (2) G-P(sol) polarization free energy of solvation -35.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds