Wall clock time and date at job start Sat Apr 11 2020 05:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48497 * 109.47195 * 270.00494 * 3 2 1 5 5 H 1.48506 * 109.46915 * 30.00594 * 3 2 1 6 6 H 1.48495 * 109.46945 * 150.00070 * 3 2 1 7 7 C 1.38794 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99789 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00063 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47195 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99438 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00077 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99594 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.46883 * 180.02562 * 14 13 11 16 16 C 1.30994 * 120.00204 * 124.99760 * 15 14 13 17 17 C 1.50701 * 119.99826 * 179.71900 * 16 15 14 18 18 N 1.46502 * 109.46804 * 125.27541 * 17 16 15 19 19 C 1.34774 * 120.00215 * 180.02562 * 18 17 16 20 20 O 1.21646 * 120.00023 * 0.02562 * 19 18 17 21 21 C 1.47188 * 120.00623 * 180.02562 * 19 18 17 22 22 C 1.44419 * 123.46514 * 179.72683 * 21 19 18 23 23 C 1.32771 * 113.08655 * 179.80761 * 22 21 19 24 24 S 1.75505 * 110.57122 * 0.44454 * 23 22 21 25 25 C 1.36007 * 123.45823 * 0.02562 * 21 19 18 26 26 H 0.97003 * 120.00310 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47383 * 59.99931 * 10 9 7 28 28 H 1.09004 * 109.47325 * 299.99999 * 10 9 7 29 29 H 0.96999 * 120.00048 * 359.97438 * 13 11 10 30 30 H 1.08998 * 109.47613 * 59.99379 * 14 13 11 31 31 H 1.09004 * 109.46865 * 299.99589 * 14 13 11 32 32 H 1.08002 * 119.99446 * 304.99290 * 15 14 13 33 33 H 1.08002 * 120.00352 * 0.02562 * 16 15 14 34 34 H 1.08998 * 109.47474 * 245.27493 * 17 16 15 35 35 H 1.09001 * 109.47291 * 5.27780 * 17 16 15 36 36 H 0.96997 * 119.99920 * 0.02562 * 18 17 16 37 37 H 1.08002 * 123.45894 * 0.02562 * 22 21 19 38 38 H 1.08002 * 124.71655 * 180.18104 * 23 22 21 39 39 H 1.08006 * 124.59523 * 0.02562 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7911 -5.5022 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3305 -7.7150 -0.0019 15 6 3.4850 -8.6837 -0.0006 16 6 3.5671 -9.6034 0.9286 17 6 4.7183 -10.5761 0.9262 18 7 5.3947 -10.5351 2.2250 19 6 6.4613 -11.3264 2.4546 20 8 6.8626 -12.0743 1.5832 21 6 7.1407 -11.2858 3.7597 22 6 8.2846 -12.1039 4.0879 23 6 8.7358 -11.8981 5.3195 24 16 7.7607 -10.6912 6.1398 25 6 6.7520 -10.4780 4.7826 26 1 -0.4851 0.8400 0.0004 27 1 3.1245 -3.7313 0.8894 28 1 3.1245 -3.7312 -0.8905 29 1 3.8010 -6.1834 -0.0004 30 1 1.7227 -7.8747 -0.8925 31 1 1.7210 -7.8755 0.8874 32 1 4.2445 -8.6196 -0.7657 33 1 2.8074 -9.6679 1.6934 34 1 4.3428 -11.5829 0.7437 35 1 5.4230 -10.3031 0.1408 36 1 5.0750 -9.9385 2.9198 37 1 8.7297 -12.8083 3.4007 38 1 9.5823 -12.4062 5.7574 39 1 5.9167 -9.7946 4.7408 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501670058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:57 Heat of formation + Delta-G solvation = -27.556891 kcal Electronic energy + Delta-G solvation = -22062.210225 eV Core-core repulsion = 18416.059468 eV Total energy + Delta-G solvation = -3646.150757 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.30737 -39.24135 -37.42788 -36.58158 -34.95956 -32.99610 -32.44999 -30.62720 -29.62024 -27.60933 -25.60359 -25.36768 -23.85655 -21.75935 -20.76726 -20.27856 -19.41466 -18.63780 -17.89492 -17.48024 -16.55453 -16.20142 -15.99049 -15.67519 -15.37228 -15.02096 -14.82340 -14.25280 -14.11823 -13.92082 -13.69890 -13.54173 -13.34294 -13.09100 -12.97462 -12.79841 -12.68737 -12.50315 -11.82882 -11.63438 -11.57325 -11.08249 -11.04596 -10.78609 -10.46735 -10.01067 -9.83792 -9.63043 -9.51787 -9.35461 -9.09240 -8.95462 -8.92565 -8.26530 -6.52715 -6.23807 -3.94687 0.24032 1.01412 1.38981 1.45755 1.52313 2.86685 2.93503 3.03942 3.06112 3.20822 3.26995 3.31991 3.73855 4.16781 4.18328 4.25017 4.47827 4.57749 4.71904 4.84194 4.93766 5.05907 5.11429 5.19178 5.24845 5.28056 5.39363 5.52713 5.57188 5.72976 5.73427 5.85165 5.87648 6.10407 6.12196 6.21721 6.54664 7.01865 7.57384 7.64230 7.76213 8.33010 8.54971 9.21552 10.83599 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.013593 B = 0.001603 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.383877 B =17463.053816 C =18964.925935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.737 5.737 14 C 0.147 3.853 15 C -0.139 4.139 16 C -0.167 4.167 17 C 0.151 3.849 18 N -0.722 5.722 19 C 0.578 3.422 20 O -0.536 6.536 21 C -0.156 4.156 22 C -0.086 4.086 23 C -0.237 4.237 24 S 0.193 5.807 25 C -0.212 4.212 26 H 0.269 0.731 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.399 0.601 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.401 0.599 37 H 0.155 0.845 38 H 0.171 0.829 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.879 -25.028 10.436 31.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.392 5.392 14 C 0.023 3.977 15 C -0.158 4.158 16 C -0.186 4.186 17 C 0.028 3.972 18 N -0.374 5.374 19 C 0.363 3.637 20 O -0.414 6.414 21 C -0.175 4.175 22 C -0.115 4.115 23 C -0.372 4.372 24 S 0.459 5.541 25 C -0.351 4.351 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.233 0.767 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.236 0.764 37 H 0.172 0.828 38 H 0.188 0.812 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 15.023 -25.163 11.240 31.387 hybrid contribution 2.126 1.029 -1.165 2.633 sum 17.148 -24.134 10.075 31.273 Atomic orbital electron populations 1.70015 1.05952 1.27482 1.46807 1.24992 0.95032 0.99038 0.94513 0.86165 0.79401 0.81548 0.78369 1.20255 1.20738 1.19700 1.22867 0.94914 0.91634 1.59023 0.90910 1.85402 1.04887 0.96346 1.96727 1.23531 1.06615 0.95263 1.04978 1.20346 0.86502 0.86285 0.75093 1.90710 1.15364 1.85570 1.47466 1.45980 1.10075 1.05028 1.78082 1.20302 0.94123 0.80265 1.02985 1.23081 0.98806 0.95292 0.98612 1.22914 0.98699 0.97016 1.00019 1.20368 0.92376 0.99312 0.85140 1.45836 1.31441 1.43341 1.16791 1.17613 0.79663 0.79890 0.86489 1.90811 1.65112 1.39601 1.45893 1.20290 1.00239 1.01851 0.95073 1.21147 0.94740 0.99469 0.96133 1.25572 1.06752 1.05709 0.99150 1.83215 1.21213 1.35901 1.13789 1.25738 1.05858 1.04578 0.98879 0.92161 0.89195 0.89160 0.76685 0.90411 0.91031 0.86205 0.86096 0.90225 0.90647 0.76361 0.82795 0.81177 0.81158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 11 C 0.53 9.58 7.85 -10.98 -0.09 9.49 16 12 O -0.52 -11.47 15.86 5.55 0.09 -11.39 16 13 N -0.74 -9.16 5.55 -61.47 -0.34 -9.50 16 14 C 0.15 1.53 6.11 -5.19 -0.03 1.50 16 15 C -0.14 -1.00 9.24 -36.02 -0.33 -1.33 16 16 C -0.17 -1.06 9.24 -36.02 -0.33 -1.39 16 17 C 0.15 1.06 6.11 -5.19 -0.03 1.02 16 18 N -0.72 -5.09 5.52 -62.64 -0.35 -5.43 16 19 C 0.58 5.55 7.79 -12.63 -0.10 5.45 16 20 O -0.54 -7.07 16.80 5.24 0.09 -6.98 16 21 C -0.16 -1.23 5.98 -104.63 -0.63 -1.85 16 22 C -0.09 -0.63 10.10 -39.02 -0.39 -1.02 16 23 C -0.24 -1.26 11.12 28.86 0.32 -0.94 16 24 S 0.19 0.91 23.02 -107.50 -2.48 -1.57 16 25 C -0.21 -1.19 10.38 29.93 0.31 -0.88 16 26 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 28 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 29 H 0.40 3.83 8.46 -40.82 -0.35 3.48 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.79 7.79 -51.93 -0.40 0.38 16 32 H 0.12 0.76 7.84 -52.49 -0.41 0.35 16 33 H 0.12 0.70 7.84 -52.49 -0.41 0.28 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.57 7.79 -51.93 -0.40 0.17 16 36 H 0.40 1.92 6.96 -40.82 -0.28 1.64 16 37 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 39 H 0.17 0.56 7.01 -52.48 -0.37 0.19 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -36.85 374.99 -9.43 -46.27 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.71 Total: 1.38 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -0.88 Total: -5.58 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.05 Total: -40.16 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.18 Total: -18.37 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -0.71 SS G_CDS: -4.69 Total: -5.39 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.85 -9.43 -46.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501670058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.718 kcal (2) G-P(sol) polarization free energy of solvation -36.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds