Wall clock time and date at job start Sat Apr 11 2020 05:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48497 * 109.47195 * 270.00494 * 3 2 1 5 5 H 1.48506 * 109.46915 * 30.00594 * 3 2 1 6 6 H 1.48495 * 109.46945 * 150.00070 * 3 2 1 7 7 C 1.38794 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99789 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00063 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47195 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99438 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00077 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99594 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.46883 * 180.02562 * 14 13 11 16 16 C 1.30994 * 120.00204 * 124.99760 * 15 14 13 17 17 C 1.50701 * 119.99826 * 179.71900 * 16 15 14 18 18 N 1.46502 * 109.46804 * 125.27541 * 17 16 15 19 19 C 1.34774 * 120.00215 * 180.02562 * 18 17 16 20 20 O 1.21646 * 120.00023 * 0.02562 * 19 18 17 21 21 C 1.47188 * 120.00623 * 180.02562 * 19 18 17 22 22 C 1.44419 * 123.46514 * 179.72683 * 21 19 18 23 23 C 1.32771 * 113.08655 * 179.80761 * 22 21 19 24 24 S 1.75505 * 110.57122 * 0.44454 * 23 22 21 25 25 C 1.36007 * 123.45823 * 0.02562 * 21 19 18 26 26 H 0.97003 * 120.00310 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47383 * 59.99931 * 10 9 7 28 28 H 1.09004 * 109.47325 * 299.99999 * 10 9 7 29 29 H 0.96999 * 120.00048 * 359.97438 * 13 11 10 30 30 H 1.08998 * 109.47613 * 59.99379 * 14 13 11 31 31 H 1.09004 * 109.46865 * 299.99589 * 14 13 11 32 32 H 1.08002 * 119.99446 * 304.99290 * 15 14 13 33 33 H 1.08002 * 120.00352 * 0.02562 * 16 15 14 34 34 H 1.08998 * 109.47474 * 245.27493 * 17 16 15 35 35 H 1.09001 * 109.47291 * 5.27780 * 17 16 15 36 36 H 0.96997 * 119.99920 * 0.02562 * 18 17 16 37 37 H 1.08002 * 123.45894 * 0.02562 * 22 21 19 38 38 H 1.08002 * 124.71655 * 180.18104 * 23 22 21 39 39 H 1.08006 * 124.59523 * 0.02562 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7911 -5.5022 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3305 -7.7150 -0.0019 15 6 3.4850 -8.6837 -0.0006 16 6 3.5671 -9.6034 0.9286 17 6 4.7183 -10.5761 0.9262 18 7 5.3947 -10.5351 2.2250 19 6 6.4613 -11.3264 2.4546 20 8 6.8626 -12.0743 1.5832 21 6 7.1407 -11.2858 3.7597 22 6 8.2846 -12.1039 4.0879 23 6 8.7358 -11.8981 5.3195 24 16 7.7607 -10.6912 6.1398 25 6 6.7520 -10.4780 4.7826 26 1 -0.4851 0.8400 0.0004 27 1 3.1245 -3.7313 0.8894 28 1 3.1245 -3.7312 -0.8905 29 1 3.8010 -6.1834 -0.0004 30 1 1.7227 -7.8747 -0.8925 31 1 1.7210 -7.8755 0.8874 32 1 4.2445 -8.6196 -0.7657 33 1 2.8074 -9.6679 1.6934 34 1 4.3428 -11.5829 0.7437 35 1 5.4230 -10.3031 0.1408 36 1 5.0750 -9.9385 2.9198 37 1 8.7297 -12.8083 3.4007 38 1 9.5823 -12.4062 5.7574 39 1 5.9167 -9.7946 4.7408 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501670058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:56 Heat of formation + Delta-G solvation = -54.443568 kcal Electronic energy + Delta-G solvation = -22063.376119 eV Core-core repulsion = 18416.059468 eV Total energy + Delta-G solvation = -3647.316650 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.97239 -40.59875 -37.96266 -37.36309 -35.91311 -34.58017 -33.90531 -31.44596 -30.67783 -28.49941 -27.63235 -26.06490 -24.58099 -22.34342 -21.86946 -21.12108 -20.09017 -19.73573 -19.09010 -18.04792 -17.83097 -17.40517 -16.87411 -16.76827 -16.59722 -16.36950 -15.87450 -15.64937 -15.08441 -14.92291 -14.54350 -14.42232 -14.30220 -13.98863 -13.81227 -13.75053 -13.40535 -13.28555 -13.16483 -13.15882 -12.88343 -12.61039 -12.22339 -12.09575 -11.72431 -11.17810 -11.13861 -11.07790 -10.54573 -10.26954 -10.22986 -10.02956 -9.95215 -9.36939 -8.66014 -8.34162 -6.12147 -0.22384 0.61650 0.81587 0.96818 0.98123 1.30136 1.42967 1.49326 1.59683 1.61240 2.27204 2.28538 2.30214 2.43550 3.00083 3.33553 3.54564 3.82779 3.95050 3.99322 4.01446 4.28011 4.29938 4.33291 4.44161 4.52268 4.53669 4.56016 4.67507 4.81949 4.83287 5.13760 5.23199 5.28550 5.35904 5.42599 5.55143 5.67024 6.20386 6.44861 6.50644 7.07312 7.12540 7.24001 8.74967 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.013593 B = 0.001603 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.383877 B =17463.053816 C =18964.925935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.566 6.566 13 N -0.710 5.710 14 C 0.147 3.853 15 C -0.139 4.139 16 C -0.145 4.145 17 C 0.151 3.849 18 N -0.710 5.710 19 C 0.574 3.426 20 O -0.583 6.583 21 C -0.185 4.185 22 C -0.112 4.112 23 C -0.235 4.235 24 S 0.235 5.765 25 C -0.207 4.207 26 H 0.271 0.729 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.417 0.583 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.414 0.586 37 H 0.144 0.856 38 H 0.192 0.808 39 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.085 -24.775 11.771 33.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.364 5.364 14 C 0.024 3.976 15 C -0.158 4.158 16 C -0.165 4.165 17 C 0.028 3.972 18 N -0.362 5.362 19 C 0.361 3.639 20 O -0.465 6.465 21 C -0.203 4.203 22 C -0.141 4.141 23 C -0.370 4.370 24 S 0.501 5.499 25 C -0.346 4.346 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.254 0.746 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.251 0.749 37 H 0.162 0.838 38 H 0.209 0.791 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 17.269 -24.927 12.594 32.836 hybrid contribution 1.495 0.809 -1.491 2.261 sum 18.764 -24.118 11.103 32.513 Atomic orbital electron populations 1.70180 1.07959 1.28596 1.48007 1.26120 0.95960 1.03305 0.93766 0.84960 0.78233 0.76069 0.78759 1.19400 1.20336 1.18138 1.23211 0.95371 0.92012 1.58837 0.89863 1.85578 1.10615 0.99257 1.97057 1.23377 1.03532 0.94314 1.06885 1.20070 0.86207 0.86688 0.75112 1.90700 1.17445 1.86095 1.50223 1.45722 1.10386 1.04770 1.75507 1.20379 0.95321 0.79391 1.02503 1.22856 0.98214 0.95063 0.99684 1.22878 0.98144 0.95846 0.99588 1.20335 0.92439 0.99272 0.85108 1.45743 1.30599 1.42785 1.17092 1.17945 0.79820 0.79379 0.86726 1.90777 1.66603 1.41690 1.47441 1.20239 1.01289 1.03741 0.95044 1.21200 0.95532 1.00288 0.97056 1.25871 1.07073 1.05522 0.98517 1.83126 1.19894 1.34535 1.12391 1.26054 1.06214 1.03762 0.98568 0.92006 0.87075 0.87203 0.74576 0.91314 0.91348 0.84877 0.85069 0.90593 0.91029 0.74882 0.83835 0.79101 0.78933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.50 13.22 21.65 0.29 -55.22 16 2 C 0.01 0.75 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.05 29.55 68.60 2.03 45.07 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.55 -30.79 9.50 67.95 0.65 -30.14 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 9 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 10 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 11 C 0.53 18.71 7.85 87.66 0.69 19.40 16 12 O -0.57 -25.42 15.86 -3.04 -0.05 -25.47 16 13 N -0.71 -16.08 5.55 -466.77 -2.59 -18.67 16 14 C 0.15 2.81 6.11 85.63 0.52 3.33 16 15 C -0.14 -1.66 9.24 25.65 0.24 -1.42 16 16 C -0.15 -1.48 9.24 25.65 0.24 -1.24 16 17 C 0.15 1.90 6.11 85.63 0.52 2.42 16 18 N -0.71 -9.00 5.52 -470.32 -2.59 -11.60 16 19 C 0.57 10.91 7.79 86.59 0.67 11.59 16 20 O -0.58 -15.92 16.80 -4.18 -0.07 -15.99 16 21 C -0.18 -2.78 5.98 -19.87 -0.12 -2.90 16 22 C -0.11 -1.62 10.10 22.67 0.23 -1.39 16 23 C -0.23 -2.14 11.12 66.64 0.74 -1.40 16 24 S 0.23 1.62 23.02 -56.49 -1.30 0.32 16 25 C -0.21 -1.89 10.38 67.30 0.70 -1.19 16 26 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 27 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 28 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 29 H 0.42 6.63 8.46 -92.71 -0.78 5.85 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.40 7.79 -2.38 -0.02 1.38 16 32 H 0.13 1.30 7.84 -2.91 -0.02 1.28 16 33 H 0.13 1.13 7.84 -2.91 -0.02 1.11 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 0.99 7.79 -2.39 -0.02 0.98 16 36 H 0.41 2.99 6.96 -92.71 -0.65 2.35 16 37 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 38 H 0.19 0.77 8.06 -2.91 -0.02 0.74 16 39 H 0.19 0.68 7.01 -2.91 -0.02 0.66 16 Total: -1.00 -83.22 374.99 0.20 -83.02 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -0.33 Total: 14.28 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 5.98 Total: -6.26 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -4.90 Total: -85.49 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -0.12 Total: -41.45 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -6.70 SS G_CDS: -2.46 Total: -9.16 kcal Total: -83.22 0.20 -83.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501670058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.573 kcal (2) G-P(sol) polarization free energy of solvation -83.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds