Wall clock time and date at job start Sat Apr 11 2020 05:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 120.00568 * 2 1 4 4 H 1.48502 * 109.47403 * 240.00339 * 3 2 1 5 5 H 1.48501 * 109.46766 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47082 * 119.99875 * 3 2 1 7 7 C 1.38808 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99842 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99783 * 359.97438 * 7 2 1 10 10 C 1.80996 * 99.99783 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47047 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00002 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99816 * 180.02562 * 11 10 9 14 14 C 1.47067 * 136.06142 * 5.08360 * 13 11 10 15 15 C 1.53498 * 87.98461 * 207.08725 * 14 13 11 16 16 C 1.47068 * 136.05574 * 185.03509 * 13 11 10 17 17 H 1.09007 * 113.46394 * 267.75429 * 16 13 11 18 18 C 1.53003 * 113.46634 * 38.12941 * 16 13 11 19 19 N 1.46506 * 109.46756 * 184.24482 * 18 16 13 20 20 C 1.34780 * 119.99751 * 175.01817 * 19 18 16 21 21 O 1.21705 * 119.99830 * 359.97438 * 20 19 18 22 22 C 1.46576 * 119.99992 * 179.97438 * 20 19 18 23 23 C 1.36652 * 125.46131 * 179.97438 * 22 20 19 24 24 C 1.37469 * 113.30052 * 179.97438 * 23 22 20 25 25 C 1.33815 * 115.09993 * 359.97438 * 24 23 22 26 26 S 1.70623 * 110.95546 * 0.02562 * 25 24 23 27 27 H 0.97007 * 119.99577 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47321 * 60.00418 * 10 9 7 29 29 H 1.09003 * 109.47562 * 300.00108 * 10 9 7 30 30 H 1.09000 * 113.46609 * 321.86589 * 14 13 11 31 31 H 1.08991 * 113.46716 * 92.24508 * 14 13 11 32 32 H 1.09005 * 114.20062 * 220.34422 * 15 14 13 33 33 H 1.08998 * 114.20595 * 87.52032 * 15 14 13 34 34 H 1.08994 * 109.47074 * 64.24638 * 18 16 13 35 35 H 1.08995 * 109.47189 * 304.24123 * 18 16 13 36 36 H 0.97000 * 119.99835 * 355.01705 * 19 18 16 37 37 H 1.08002 * 123.34413 * 359.95889 * 23 22 20 38 38 H 1.07993 * 122.44933 * 179.97438 * 24 23 22 39 39 H 1.07996 * 124.52258 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2855 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9871 -5.3028 -0.0012 12 8 0.7908 -5.5023 -0.0011 13 7 2.8438 -6.3432 -0.0008 14 6 4.3016 -6.5146 0.0907 15 6 4.1427 -7.8231 -0.6959 16 6 2.7322 -7.8069 -0.0907 17 1 2.6699 -8.2979 0.8805 18 6 1.6471 -8.2767 -1.0616 19 7 1.5426 -9.7370 -1.0077 20 6 0.5799 -10.3700 -1.7071 21 8 -0.2028 -9.7284 -2.3830 22 6 0.4757 -11.8311 -1.6537 23 6 -0.4533 -12.5843 -2.3147 24 6 -0.3214 -13.9336 -2.0867 25 6 0.6804 -14.2757 -1.2681 26 16 1.5268 -12.8955 -0.7296 27 1 -0.4850 0.8401 0.0004 28 1 3.1242 -3.7315 0.8895 29 1 3.1243 -3.7315 -0.8905 30 1 4.8630 -5.7505 -0.4469 31 1 4.6584 -6.6605 1.1101 32 1 4.7727 -8.6381 -0.3394 33 1 4.1659 -7.6994 -1.7786 34 1 1.9072 -7.9682 -2.0741 35 1 0.6917 -7.8335 -0.7808 36 1 2.1663 -10.2483 -0.4688 37 1 -1.2154 -12.1616 -2.9526 38 1 -0.9783 -14.6640 -2.5353 39 1 0.9210 -15.2900 -0.9860 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505595859.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:03 Heat of formation + Delta-G solvation = 5.490283 kcal Electronic energy + Delta-G solvation = -23273.376980 eV Core-core repulsion = 19628.659257 eV Total energy + Delta-G solvation = -3644.717724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.67014 -39.73096 -37.87392 -37.50323 -34.88312 -32.42623 -31.03297 -30.37362 -28.52400 -28.11505 -25.49134 -25.29970 -23.38367 -22.19750 -21.56671 -19.86606 -19.28459 -18.56501 -17.72495 -16.77721 -16.58879 -16.11983 -15.86384 -15.52799 -15.27429 -14.85393 -14.79899 -14.31775 -13.94022 -13.88894 -13.79345 -13.20340 -13.16285 -12.90194 -12.76399 -12.66180 -12.48566 -12.16989 -11.95882 -11.67492 -11.44896 -11.05293 -11.03581 -10.84069 -10.76652 -10.32052 -9.83137 -9.52734 -9.35170 -9.16758 -9.05728 -9.02706 -8.69510 -8.23995 -6.50318 -6.20958 -3.92096 0.10808 1.03369 1.43105 2.02213 2.46938 2.93131 2.96055 3.07947 3.23809 3.25892 3.29507 3.56719 4.03117 4.20464 4.41757 4.52073 4.59570 4.67257 4.77830 4.88844 4.91610 5.07003 5.12810 5.14002 5.29608 5.43039 5.50646 5.54185 5.60869 5.72763 5.80215 5.83509 5.90147 5.92547 5.96716 6.12838 6.20242 7.13274 7.59436 7.79322 7.90352 8.35262 8.50646 9.23835 10.86379 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.028003 B = 0.001947 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.637544 B =14380.036425 C =15145.542074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.144 4.144 11 C 0.561 3.439 12 O -0.508 6.508 13 N -0.647 5.647 14 C 0.102 3.898 15 C -0.153 4.153 16 C 0.122 3.878 17 H 0.095 0.905 18 C 0.113 3.887 19 N -0.722 5.722 20 C 0.588 3.412 21 O -0.519 6.519 22 C -0.262 4.262 23 C -0.056 4.056 24 C -0.148 4.148 25 C -0.230 4.230 26 S 0.196 5.804 27 H 0.269 0.731 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.396 0.604 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.431 -30.162 -0.701 31.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.294 4.294 11 C 0.351 3.649 12 O -0.381 6.381 13 N -0.387 5.387 14 C -0.022 4.022 15 C -0.191 4.191 16 C 0.018 3.982 17 H 0.113 0.887 18 C -0.011 4.011 19 N -0.374 5.374 20 C 0.374 3.626 21 O -0.396 6.396 22 C -0.383 4.383 23 C -0.089 4.089 24 C -0.180 4.180 25 C -0.368 4.368 26 S 0.463 5.537 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.230 0.770 37 H 0.173 0.827 38 H 0.164 0.836 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.988 -29.405 -0.221 30.749 hybrid contribution 1.050 0.628 -0.546 1.340 sum 10.038 -28.777 -0.767 30.487 Atomic orbital electron populations 1.70012 1.05952 1.27594 1.46638 1.24999 0.95038 0.99028 0.94519 0.86214 0.79228 0.81214 0.78779 1.19924 1.20789 1.19952 1.22813 0.94851 0.91595 1.59205 0.90971 1.85447 1.04737 0.96292 1.96725 1.23468 1.06571 0.94517 1.04865 1.20032 0.85350 0.84932 0.74623 1.90734 1.14756 1.84795 1.47809 1.49756 1.08365 1.04841 1.75720 1.22879 0.82021 0.96853 1.00404 1.23614 0.95735 0.98297 1.01443 1.22760 0.94389 0.82648 0.98438 0.88706 1.21650 1.01138 0.78424 0.99906 1.45677 1.33622 1.08141 1.49999 1.16919 0.80855 0.85061 0.79791 1.90899 1.41475 1.66428 1.40771 1.24666 1.05876 0.97245 1.10499 1.20869 0.97776 0.92428 0.97845 1.20083 1.00249 0.96144 1.01479 1.25324 1.02153 1.04307 1.04975 1.82926 1.31047 0.95068 1.44705 0.92095 0.89342 0.89219 0.89927 0.89676 0.89167 0.88317 0.90530 0.88825 0.77025 0.82713 0.83582 0.81323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.54 -15.41 9.50 30.94 0.29 -15.12 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.14 -2.98 5.99 36.01 0.22 -2.76 16 11 C 0.56 10.89 7.97 -10.98 -0.09 10.80 16 12 O -0.51 -11.94 15.46 5.56 0.09 -11.86 16 13 N -0.65 -8.93 3.57 -177.46 -0.63 -9.56 16 14 C 0.10 0.89 8.42 -8.51 -0.07 0.82 16 15 C -0.15 -1.05 8.02 -26.22 -0.21 -1.26 16 16 C 0.12 1.25 4.07 -72.40 -0.29 0.96 16 17 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 18 C 0.11 1.42 5.47 -4.04 -0.02 1.40 16 19 N -0.72 -7.36 5.55 -61.65 -0.34 -7.70 16 20 C 0.59 7.45 7.78 -12.90 -0.10 7.34 16 21 O -0.52 -8.94 16.84 5.18 0.09 -8.85 16 22 C -0.26 -2.55 6.45 -36.79 -0.24 -2.79 16 23 C -0.06 -0.50 10.01 -40.43 -0.40 -0.91 16 24 C -0.15 -0.98 10.15 -41.41 -0.42 -1.40 16 25 C -0.23 -1.28 10.92 29.18 0.32 -0.96 16 26 S 0.20 1.18 22.16 -107.50 -2.38 -1.21 16 27 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 29 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.72 7.95 -51.93 -0.41 0.30 16 34 H 0.08 1.03 7.89 -51.93 -0.41 0.62 16 35 H 0.09 1.59 7.14 -51.93 -0.37 1.22 16 36 H 0.40 2.68 7.59 -40.82 -0.31 2.37 16 37 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 LS Contribution 368.19 15.07 5.55 5.55 Total: -1.00 -38.18 368.19 -10.11 -48.29 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -4.85 Total: 0.19 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -1.12 Total: -1.85 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -0.24 Total: -42.94 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.17 Total: -20.71 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -4.59 Total: -5.04 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.18 -10.11 -48.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505595859.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.776 kcal (2) G-P(sol) polarization free energy of solvation -38.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds