Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86807 * 120.00013 * 2 1 4 4 H 1.48497 * 109.46751 * 270.00091 * 3 2 1 5 5 H 1.48498 * 109.47050 * 29.99976 * 3 2 1 6 6 H 1.48497 * 109.47138 * 150.00399 * 3 2 1 7 7 C 1.38654 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99324 * 0.02562 * 7 2 1 9 9 O 1.34831 * 120.00321 * 179.97438 * 7 2 1 10 10 C 1.35755 * 116.99691 * 174.93726 * 9 7 2 11 11 C 1.38937 * 120.03858 * 185.61989 * 10 9 7 12 12 C 1.38108 * 120.04018 * 179.97438 * 11 10 9 13 13 C 1.38236 * 120.12306 * 359.78976 * 12 11 10 14 14 C 1.38776 * 120.08101 * 0.46316 * 13 12 11 15 15 O 1.35925 * 120.02139 * 179.79049 * 14 13 12 16 16 C 1.34266 * 117.00017 * 255.02010 * 15 14 13 17 17 O 1.20831 * 119.99948 * 355.00991 * 16 15 14 18 18 C 1.50701 * 120.00204 * 175.01027 * 16 15 14 19 19 C 1.52584 * 109.24252 * 180.02562 * 18 16 15 20 20 C 1.53041 * 109.89818 * 190.23299 * 19 18 16 21 21 S 1.81666 * 108.99979 * 296.40421 * 20 19 18 22 22 O 1.42108 * 108.66099 * 168.62992 * 21 20 19 23 23 O 1.42097 * 108.66289 * 299.86969 * 21 20 19 24 24 C 1.81664 * 101.30868 * 54.30040 * 21 20 19 25 25 C 1.52401 * 109.08565 * 301.18654 * 18 16 15 26 26 C 1.38612 * 119.95933 * 359.51736 * 14 13 12 27 27 H 0.96992 * 119.99684 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.98105 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.93874 * 180.02562 * 12 11 10 30 30 H 1.07997 * 119.95655 * 180.25263 * 13 12 11 31 31 H 1.08997 * 109.20556 * 60.57697 * 18 16 15 32 32 H 1.08994 * 109.38825 * 70.13465 * 19 18 16 33 33 H 1.08998 * 109.38848 * 310.33763 * 19 18 16 34 34 H 1.09005 * 109.54977 * 56.26047 * 20 19 18 35 35 H 1.08999 * 109.54891 * 176.44652 * 20 19 18 36 36 H 1.09001 * 109.55388 * 65.55581 * 24 21 20 37 37 H 1.08999 * 109.54964 * 185.74934 * 24 21 20 38 38 H 1.08990 * 109.42638 * 49.52210 * 25 18 16 39 39 H 1.08998 * 109.33394 * 289.73114 * 25 18 16 40 40 H 1.07998 * 120.06422 * 180.23041 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4402 0.6999 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3573 -1.2007 0.0000 10 6 3.9736 -2.4055 0.1073 11 6 5.3559 -2.4710 0.2309 12 6 5.9829 -3.6967 0.3406 13 6 5.2372 -4.8606 0.3322 14 6 3.8567 -4.8013 0.2037 15 8 3.1250 -5.9468 0.1913 16 6 2.6425 -6.3490 -0.9953 17 8 2.7884 -5.6549 -1.9735 18 6 1.9188 -7.6662 -1.1072 19 6 1.4794 -7.8773 -2.5531 20 6 0.5300 -9.0745 -2.6395 21 16 1.4257 -10.5763 -2.1468 22 8 0.4871 -11.6291 -1.9733 23 8 2.5231 -10.7617 -3.0303 24 6 2.0638 -10.0918 -0.5164 25 6 2.8496 -8.7859 -0.6574 26 6 3.2238 -3.5730 0.0938 27 1 -0.4849 0.8400 -0.0004 28 1 5.9405 -1.5630 0.2412 29 1 7.0575 -3.7457 0.4370 30 1 5.7299 -5.8174 0.4222 31 1 1.0396 -7.6481 -0.4632 32 1 2.3555 -8.0649 -3.1738 33 1 0.9679 -6.9834 -2.9100 34 1 -0.3160 -8.9182 -1.9701 35 1 0.1704 -9.1817 -3.6628 36 1 1.2316 -9.9446 0.1720 37 1 2.7194 -10.8742 -0.1341 38 1 3.2925 -8.5250 0.3037 39 1 3.6400 -8.9169 -1.3964 40 1 2.1492 -3.5248 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001528283318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -145.677174 kcal Electronic energy + Delta-G solvation = -27069.128174 eV Core-core repulsion = 22942.809715 eV Total energy + Delta-G solvation = -4126.318459 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.090 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.28049 -39.23679 -38.07432 -37.32730 -36.56339 -36.37902 -35.94121 -32.48979 -32.34404 -30.17272 -29.37979 -28.72351 -25.45759 -24.25722 -23.78573 -21.92664 -21.54976 -20.40609 -19.26031 -18.29763 -18.17838 -17.65542 -17.12905 -16.75834 -16.26832 -16.19860 -15.91123 -15.39694 -14.85931 -14.67058 -14.39593 -14.19560 -13.98022 -13.83011 -13.60556 -13.41933 -13.24986 -12.66071 -12.62042 -12.50488 -12.36561 -12.33043 -12.31351 -12.01422 -11.72353 -11.59552 -11.43233 -11.20294 -11.12921 -10.88355 -10.57939 -10.50609 -10.41897 -10.29709 -9.61472 -8.98269 -8.35269 -7.59585 -6.51895 -4.19773 -0.39496 1.55642 2.01420 2.08515 2.24398 2.75983 3.16424 3.19511 3.25010 3.33038 3.55506 3.90000 4.00553 4.12094 4.14970 4.23873 4.35041 4.42003 4.60713 4.66284 4.71623 4.87049 4.99479 5.03238 5.13629 5.28893 5.38127 5.42986 5.56530 5.59996 5.70365 5.77966 5.97758 6.13568 6.29502 6.70197 6.84603 6.91168 6.96915 7.31995 7.62812 7.86779 7.96736 8.82114 9.40315 10.55334 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.018782 B = 0.002648 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.460394 B =10572.726426 C =11620.563220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.393 4.393 8 H 0.105 0.895 9 O -0.209 6.209 10 C 0.170 3.830 11 C -0.185 4.185 12 C -0.066 4.066 13 C -0.204 4.204 14 C 0.117 3.883 15 O -0.292 6.292 16 C 0.461 3.539 17 O -0.474 6.474 18 C -0.097 4.097 19 C -0.102 4.102 20 C -0.601 4.601 21 S 2.413 3.587 22 O -0.943 6.943 23 O -0.933 6.933 24 C -0.601 4.601 25 C -0.107 4.107 26 C -0.219 4.219 27 H 0.281 0.719 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.999 -18.407 -0.370 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.468 4.468 8 H 0.122 0.878 9 O -0.113 6.113 10 C 0.117 3.883 11 C -0.204 4.204 12 C -0.084 4.084 13 C -0.223 4.223 14 C 0.077 3.923 15 O -0.208 6.208 16 C 0.303 3.697 17 O -0.357 6.357 18 C -0.116 4.116 19 C -0.140 4.140 20 C -0.730 4.730 21 S 2.595 3.405 22 O -0.940 6.940 23 O -0.931 6.931 24 C -0.730 4.730 25 C -0.145 4.145 26 C -0.238 4.238 27 H 0.091 0.909 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.997 -18.593 -1.161 19.053 hybrid contribution -0.222 1.473 0.489 1.568 sum 3.775 -17.120 -0.671 17.544 Atomic orbital electron populations 1.69639 1.05618 1.28711 1.47220 1.24481 0.95057 0.98938 0.95361 0.86156 0.80327 0.81194 0.79104 1.19735 1.20660 1.18228 1.20748 0.76690 0.96685 1.52661 0.87763 1.83593 1.22802 1.25192 1.79740 1.18850 0.91539 0.85050 0.92863 1.20350 0.91893 0.98319 1.09881 1.20499 0.98809 0.91025 0.98087 1.20559 0.91323 0.98788 1.11612 1.18208 0.89428 0.82926 1.01768 1.84488 1.62691 1.40000 1.33582 1.23489 0.77328 0.87526 0.81376 1.90760 1.52994 1.54407 1.37537 1.21196 1.00076 0.90492 0.99875 1.21223 0.99748 0.98513 0.94511 1.30236 1.12163 1.17101 1.13469 1.08223 0.76583 0.77377 0.78333 1.93606 1.63039 1.51252 1.86096 1.93606 1.52622 1.84787 1.62051 1.30232 1.12077 1.07262 1.23412 1.21279 0.97550 0.89670 1.06034 1.21311 1.01700 0.91066 1.09739 0.90870 0.85812 0.85728 0.86463 0.85826 0.88535 0.87615 0.84406 0.83987 0.84283 0.84045 0.87500 0.88730 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.84 13.96 55.48 0.77 -24.07 16 2 C 0.07 1.81 5.49 -17.52 -0.10 1.72 16 3 Si 0.91 21.20 28.62 -169.99 -4.86 16.34 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.39 -10.95 9.94 30.89 0.31 -10.64 16 8 H 0.11 3.00 5.44 -52.48 -0.29 2.72 16 9 O -0.21 -5.41 8.59 0.03 0.00 -5.41 16 10 C 0.17 3.87 6.65 -39.13 -0.26 3.61 16 11 C -0.19 -3.51 9.99 -39.37 -0.39 -3.90 16 12 C -0.07 -1.05 10.03 -39.63 -0.40 -1.45 16 13 C -0.20 -3.35 9.98 -39.38 -0.39 -3.74 16 14 C 0.12 2.19 5.18 -39.24 -0.20 1.99 16 15 O -0.29 -4.64 9.66 -23.62 -0.23 -4.87 16 16 C 0.46 6.64 7.10 36.01 0.26 6.89 16 17 O -0.47 -8.61 15.21 -18.75 -0.29 -8.90 16 18 C -0.10 -0.85 2.36 -92.29 -0.22 -1.07 16 19 C -0.10 -0.84 4.47 -26.92 -0.12 -0.96 16 20 C -0.60 -3.35 6.34 37.18 0.24 -3.12 16 21 S 2.41 16.94 5.30 -107.50 -0.57 16.37 16 22 O -0.94 -9.78 18.10 -57.82 -1.05 -10.83 16 23 O -0.93 -10.00 17.95 -57.82 -1.04 -11.04 16 24 C -0.60 -2.80 6.35 37.19 0.24 -2.57 16 25 C -0.11 -0.72 5.00 -27.01 -0.13 -0.86 16 26 C -0.22 -4.80 8.58 -39.25 -0.34 -5.14 16 27 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 29 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.12 0.76 8.09 -51.93 -0.42 0.33 16 32 H 0.10 0.82 8.01 -51.93 -0.42 0.40 16 33 H 0.11 1.00 7.73 -51.93 -0.40 0.59 16 34 H 0.14 0.46 8.14 -51.92 -0.42 0.04 16 35 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.11 0.69 7.79 -51.93 -0.40 0.28 16 39 H 0.09 0.64 8.01 -51.93 -0.42 0.22 16 40 H 0.14 3.25 5.64 -52.49 -0.30 2.96 16 LS Contribution 351.94 15.07 5.30 5.30 Total: -1.00 -36.80 351.94 -8.21 -45.01 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -4.73 Total: 1.30 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -1.52 Total: -19.22 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.77 Total: -24.07 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -2.60 Total: -41.04 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.86 Total: 16.34 kcal Atomic # 16 Polarization: 16.94 SS G_CDS: -0.57 Total: 16.37 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.80 -8.21 -45.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528283318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.666 kcal (2) G-P(sol) polarization free energy of solvation -36.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds