Wall clock time and date at job start Sat Apr 11 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86807 * 120.00013 * 2 1 4 4 H 1.48497 * 109.46751 * 270.00091 * 3 2 1 5 5 H 1.48498 * 109.47050 * 29.99976 * 3 2 1 6 6 H 1.48497 * 109.47138 * 150.00399 * 3 2 1 7 7 C 1.38654 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99324 * 0.02562 * 7 2 1 9 9 O 1.34831 * 120.00321 * 179.97438 * 7 2 1 10 10 C 1.35755 * 116.99691 * 174.93726 * 9 7 2 11 11 C 1.38937 * 120.03858 * 185.61989 * 10 9 7 12 12 C 1.38108 * 120.04018 * 179.97438 * 11 10 9 13 13 C 1.38236 * 120.12306 * 359.78976 * 12 11 10 14 14 C 1.38776 * 120.08101 * 0.46316 * 13 12 11 15 15 O 1.35925 * 120.02139 * 179.79049 * 14 13 12 16 16 C 1.34266 * 117.00017 * 255.02010 * 15 14 13 17 17 O 1.20831 * 119.99948 * 355.00991 * 16 15 14 18 18 C 1.50701 * 120.00204 * 175.01027 * 16 15 14 19 19 C 1.52584 * 109.24252 * 180.02562 * 18 16 15 20 20 C 1.53041 * 109.89818 * 190.23299 * 19 18 16 21 21 S 1.81666 * 108.99979 * 296.40421 * 20 19 18 22 22 O 1.42108 * 108.66099 * 168.62992 * 21 20 19 23 23 O 1.42097 * 108.66289 * 299.86969 * 21 20 19 24 24 C 1.81664 * 101.30868 * 54.30040 * 21 20 19 25 25 C 1.52401 * 109.08565 * 301.18654 * 18 16 15 26 26 C 1.38612 * 119.95933 * 359.51736 * 14 13 12 27 27 H 0.96992 * 119.99684 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.98105 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.93874 * 180.02562 * 12 11 10 30 30 H 1.07997 * 119.95655 * 180.25263 * 13 12 11 31 31 H 1.08997 * 109.20556 * 60.57697 * 18 16 15 32 32 H 1.08994 * 109.38825 * 70.13465 * 19 18 16 33 33 H 1.08998 * 109.38848 * 310.33763 * 19 18 16 34 34 H 1.09005 * 109.54977 * 56.26047 * 20 19 18 35 35 H 1.08999 * 109.54891 * 176.44652 * 20 19 18 36 36 H 1.09001 * 109.55388 * 65.55581 * 24 21 20 37 37 H 1.08999 * 109.54964 * 185.74934 * 24 21 20 38 38 H 1.08990 * 109.42638 * 49.52210 * 25 18 16 39 39 H 1.08998 * 109.33394 * 289.73114 * 25 18 16 40 40 H 1.07998 * 120.06422 * 180.23041 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4402 0.6999 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3573 -1.2007 0.0000 10 6 3.9736 -2.4055 0.1073 11 6 5.3559 -2.4710 0.2309 12 6 5.9829 -3.6967 0.3406 13 6 5.2372 -4.8606 0.3322 14 6 3.8567 -4.8013 0.2037 15 8 3.1250 -5.9468 0.1913 16 6 2.6425 -6.3490 -0.9953 17 8 2.7884 -5.6549 -1.9735 18 6 1.9188 -7.6662 -1.1072 19 6 1.4794 -7.8773 -2.5531 20 6 0.5300 -9.0745 -2.6395 21 16 1.4257 -10.5763 -2.1468 22 8 0.4871 -11.6291 -1.9733 23 8 2.5231 -10.7617 -3.0303 24 6 2.0638 -10.0918 -0.5164 25 6 2.8496 -8.7859 -0.6574 26 6 3.2238 -3.5730 0.0938 27 1 -0.4849 0.8400 -0.0004 28 1 5.9405 -1.5630 0.2412 29 1 7.0575 -3.7457 0.4370 30 1 5.7299 -5.8174 0.4222 31 1 1.0396 -7.6481 -0.4632 32 1 2.3555 -8.0649 -3.1738 33 1 0.9679 -6.9834 -2.9100 34 1 -0.3160 -8.9182 -1.9701 35 1 0.1704 -9.1817 -3.6628 36 1 1.2316 -9.9446 0.1720 37 1 2.7194 -10.8742 -0.1341 38 1 3.2925 -8.5250 0.3037 39 1 3.6400 -8.9169 -1.3964 40 1 2.1492 -3.5248 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528283318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:11 Heat of formation + Delta-G solvation = -172.257569 kcal Electronic energy + Delta-G solvation = -27070.280786 eV Core-core repulsion = 22942.809715 eV Total energy + Delta-G solvation = -4127.471071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.090 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.54042 -40.80349 -39.23091 -38.18377 -37.58044 -37.32929 -37.05829 -34.51340 -32.88259 -31.56145 -30.91476 -29.59453 -27.38516 -25.21176 -24.55539 -23.34490 -22.85622 -21.48962 -20.05800 -19.86188 -19.70826 -18.68960 -18.08426 -17.57309 -17.44790 -17.27503 -16.99235 -16.67304 -16.18151 -15.86620 -15.78724 -15.39752 -15.22672 -14.99562 -14.78707 -14.40838 -14.18265 -14.14818 -13.88401 -13.48086 -13.26478 -13.20857 -13.07042 -13.05822 -12.89068 -12.81796 -12.58054 -12.46756 -12.20852 -12.12959 -11.97553 -11.79054 -11.68358 -11.48240 -11.00415 -10.96732 -9.84251 -9.25473 -8.56194 -6.31069 -0.93226 0.09600 0.49335 0.94193 1.29522 1.34200 1.49645 1.60136 1.74387 2.24144 2.65738 2.72549 2.91191 2.94040 3.06170 3.23335 3.41880 3.51824 3.59859 3.92303 3.98070 3.99707 4.06462 4.16257 4.26780 4.29931 4.48357 4.53597 4.59440 4.75283 4.80874 4.84487 4.91147 5.02660 5.03765 5.23381 5.33444 5.40682 5.46407 5.63760 5.77985 6.04918 6.65626 6.76682 7.45831 8.55442 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.018782 B = 0.002648 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.460394 B =10572.726426 C =11620.563220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.405 4.405 8 H 0.073 0.927 9 O -0.236 6.236 10 C 0.132 3.868 11 C -0.184 4.184 12 C -0.050 4.050 13 C -0.182 4.182 14 C 0.108 3.892 15 O -0.288 6.288 16 C 0.458 3.542 17 O -0.520 6.520 18 C -0.092 4.092 19 C -0.106 4.106 20 C -0.590 4.590 21 S 2.419 3.581 22 O -0.979 6.979 23 O -0.978 6.978 24 C -0.580 4.580 25 C -0.109 4.109 26 C -0.244 4.244 27 H 0.287 0.713 28 H 0.143 0.857 29 H 0.180 0.820 30 H 0.162 0.838 31 H 0.157 0.843 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.167 0.833 35 H 0.152 0.848 36 H 0.172 0.828 37 H 0.164 0.836 38 H 0.119 0.881 39 H 0.092 0.908 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.507 -19.969 1.013 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.481 4.481 8 H 0.090 0.910 9 O -0.143 6.143 10 C 0.082 3.918 11 C -0.203 4.203 12 C -0.067 4.067 13 C -0.200 4.200 14 C 0.067 3.933 15 O -0.203 6.203 16 C 0.302 3.698 17 O -0.406 6.406 18 C -0.111 4.111 19 C -0.144 4.144 20 C -0.720 4.720 21 S 2.605 3.395 22 O -0.976 6.976 23 O -0.975 6.975 24 C -0.711 4.711 25 C -0.147 4.147 26 C -0.264 4.264 27 H 0.096 0.904 28 H 0.161 0.839 29 H 0.198 0.802 30 H 0.179 0.821 31 H 0.175 0.825 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.185 0.815 35 H 0.170 0.830 36 H 0.190 0.810 37 H 0.182 0.818 38 H 0.138 0.862 39 H 0.111 0.889 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.525 -20.232 0.208 21.259 hybrid contribution -0.826 1.672 0.091 1.867 sum 5.700 -18.560 0.299 19.418 Atomic orbital electron populations 1.69726 1.07031 1.29849 1.49443 1.25342 0.95944 1.02350 0.95068 0.85166 0.78966 0.76894 0.79380 1.19120 1.18978 1.18105 1.20624 0.78037 0.95951 1.53456 0.90994 1.83530 1.21227 1.26822 1.82702 1.19484 0.93322 0.84427 0.94570 1.20792 0.90106 1.00770 1.08610 1.21156 1.01385 0.89244 0.94964 1.21194 0.90067 1.01135 1.07612 1.18431 0.90854 0.82690 1.01327 1.84511 1.62679 1.38536 1.34590 1.24707 0.76258 0.88724 0.80074 1.90748 1.54794 1.56172 1.38846 1.21471 1.00988 0.87760 1.00857 1.21209 1.00017 0.98918 0.94260 1.30157 1.12232 1.14484 1.15121 1.07809 0.75530 0.77181 0.78962 1.93563 1.63906 1.53282 1.86858 1.93549 1.53952 1.85711 1.64317 1.30083 1.13295 1.06485 1.21238 1.21333 0.97313 0.89535 1.06513 1.21261 1.00273 0.92980 1.11870 0.90372 0.83878 0.80244 0.82070 0.82519 0.89354 0.89312 0.81471 0.83038 0.81023 0.81795 0.86236 0.88935 0.88000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.01 13.96 21.61 0.30 -54.70 16 2 C 0.01 0.69 5.49 84.83 0.47 1.15 16 3 Si 0.97 44.94 28.62 68.60 1.96 46.90 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.40 -24.16 9.94 67.92 0.68 -23.49 16 8 H 0.07 4.60 5.44 -2.91 -0.02 4.58 16 9 O -0.24 -12.80 8.59 -22.80 -0.20 -13.00 16 10 C 0.13 6.17 6.65 22.56 0.15 6.32 16 11 C -0.18 -6.61 9.99 22.41 0.22 -6.38 16 12 C -0.05 -1.37 10.03 22.24 0.22 -1.14 16 13 C -0.18 -5.24 9.98 22.40 0.22 -5.02 16 14 C 0.11 3.96 5.18 22.49 0.12 4.07 16 15 O -0.29 -8.82 9.66 4.52 0.04 -8.78 16 16 C 0.46 12.99 7.10 71.24 0.51 13.50 16 17 O -0.52 -19.54 15.21 21.95 0.33 -19.21 16 18 C -0.09 -1.43 2.36 -11.88 -0.03 -1.46 16 19 C -0.11 -1.67 4.47 30.47 0.14 -1.53 16 20 C -0.59 -5.56 6.34 72.00 0.46 -5.10 16 21 S 2.42 29.94 5.30 -56.49 -0.30 29.64 16 22 O -0.98 -19.01 18.10 -127.38 -2.31 -21.32 16 23 O -0.98 -20.50 17.95 -127.38 -2.29 -22.78 16 24 C -0.58 -3.15 6.35 72.00 0.46 -2.69 16 25 C -0.11 -1.11 5.00 30.42 0.15 -0.96 16 26 C -0.24 -11.25 8.58 22.48 0.19 -11.05 16 27 H 0.29 15.61 8.31 -92.71 -0.77 14.84 16 28 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 29 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 30 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 31 H 0.16 1.41 8.09 -2.39 -0.02 1.39 16 32 H 0.09 1.52 8.01 -2.39 -0.02 1.50 16 33 H 0.09 1.73 7.73 -2.39 -0.02 1.71 16 34 H 0.17 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.17 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.16 0.33 8.14 -2.39 -0.02 0.32 16 38 H 0.12 1.03 7.79 -2.39 -0.02 1.01 16 39 H 0.09 1.02 8.01 -2.39 -0.02 1.00 16 40 H 0.10 5.35 5.64 -2.91 -0.02 5.33 16 Total: -1.00 -88.16 351.94 2.58 -85.58 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.08 Total: 11.45 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 3.95 Total: -33.78 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.30 Total: -54.70 kcal Atomic # 8 Polarization: -80.68 SS G_CDS: -4.41 Total: -85.09 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.96 Total: 46.90 kcal Atomic # 16 Polarization: 29.94 SS G_CDS: -0.30 Total: 29.64 kcal Total: -88.16 2.58 -85.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528283318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.674 kcal (2) G-P(sol) polarization free energy of solvation -88.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds