Wall clock time and date at job start Sat Apr 11 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32774 * 123.45452 * 2 1 4 4 S 1.75505 * 110.57585 * 179.97438 * 3 2 1 5 5 C 1.70446 * 92.44378 * 359.97438 * 4 3 2 6 6 C 1.36008 * 110.81990 * 0.02562 * 5 4 3 7 7 C 1.47183 * 123.46283 * 180.02562 * 6 5 4 8 8 O 1.21642 * 120.00401 * 179.97438 * 7 6 5 9 9 N 1.34781 * 119.99922 * 359.97438 * 7 6 5 10 10 C 1.46501 * 120.00004 * 180.02562 * 9 7 6 11 11 C 1.53941 * 113.74315 * 253.74093 * 10 9 7 12 12 N 1.47812 * 86.03612 * 222.08435 * 11 10 9 13 13 C 1.34774 * 134.45270 * 204.64208 * 12 11 10 14 14 O 1.21282 * 120.00052 * 179.86428 * 13 12 11 15 15 C 1.50701 * 120.00377 * 359.86635 * 13 12 11 16 16 S 1.81001 * 109.47368 * 180.02562 * 15 13 12 17 17 C 1.76192 * 100.00241 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99866 * 0.02562 * 17 16 15 19 19 C 1.38790 * 120.00303 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00079 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00239 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46819 * 60.00253 * 21 19 17 23 23 H 1.48505 * 109.46842 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47131 * 300.00058 * 21 19 17 25 25 C 1.47577 * 91.05340 * 24.54605 * 12 11 10 26 26 H 1.09006 * 109.46758 * 90.02983 * 1 2 3 27 27 H 1.09004 * 109.46961 * 210.02205 * 1 2 3 28 28 H 1.08992 * 109.47574 * 330.02490 * 1 2 3 29 29 H 1.08007 * 124.71075 * 359.73332 * 3 2 1 30 30 H 1.08005 * 124.58969 * 180.02562 * 5 4 3 31 31 H 0.97000 * 119.99834 * 359.97438 * 9 7 6 32 32 H 1.09007 * 112.94368 * 25.32689 * 10 9 7 33 33 H 1.09006 * 113.76734 * 336.34899 * 11 10 9 34 34 H 1.09001 * 113.77615 * 107.74237 * 11 10 9 35 35 H 1.09002 * 109.46493 * 299.99835 * 15 13 12 36 36 H 1.08997 * 109.46904 * 59.99780 * 15 13 12 37 37 H 0.97000 * 120.00420 * 180.02562 * 20 19 17 38 38 H 1.08995 * 113.76889 * 221.15339 * 25 12 11 39 39 H 1.09000 * 113.76953 * 89.75119 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1078 0.0000 4 16 3.9499 0.7166 0.0007 5 6 3.6411 -0.9597 0.0018 6 6 2.3033 -1.2049 0.0010 7 6 1.7264 -2.5589 0.0022 8 8 0.5189 -2.7056 0.0019 9 7 2.5361 -3.6364 0.0036 10 6 1.9619 -4.9842 0.0042 11 6 2.0809 -5.7080 1.3576 12 7 2.4402 -6.9056 0.5693 13 6 2.3649 -8.2341 0.7834 14 8 2.7440 -9.0083 -0.0697 15 6 1.8096 -8.7577 2.0829 16 16 1.8409 -10.5674 2.0669 17 6 1.1581 -10.8993 3.6569 18 1 0.8681 -10.0825 4.3012 19 6 0.9919 -12.2103 4.0809 20 7 1.3449 -13.2059 3.2954 21 14 0.2674 -12.5623 5.7664 22 1 -1.0974 -11.9828 5.8492 23 1 0.1960 -14.0305 5.9777 24 1 1.1281 -11.9534 6.8121 25 6 2.9119 -6.0630 -0.5467 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3634 0.8901 0.5134 29 1 1.8373 2.1103 -0.0041 30 1 4.4045 -1.7237 0.0029 31 1 3.4990 -3.5195 0.0035 32 1 0.9609 -5.0198 -0.4259 33 1 2.8907 -5.3358 1.9851 34 1 1.1351 -5.7996 1.8916 35 1 2.4164 -8.3914 2.9110 36 1 0.7828 -8.4127 2.2044 37 1 1.2285 -14.1222 3.5915 38 1 2.6284 -6.4374 -1.5302 39 1 3.9664 -5.7953 -0.4798 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001530394011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:18 Heat of formation + Delta-G solvation = -27.737243 kcal Electronic energy + Delta-G solvation = -23209.756990 eV Core-core repulsion = 19563.598413 eV Total energy + Delta-G solvation = -3646.158577 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.73082 -40.63693 -38.96780 -37.92023 -35.14367 -34.60659 -32.31507 -31.50489 -29.15762 -28.36488 -27.68329 -27.19152 -25.45230 -23.14679 -21.82591 -20.63884 -19.83481 -19.52415 -18.68292 -18.12092 -18.01656 -17.54215 -16.96237 -16.88064 -16.22094 -16.12006 -15.73686 -15.37956 -14.92403 -14.60406 -14.55891 -14.19472 -14.10339 -13.97522 -13.79747 -13.70113 -13.49734 -13.19459 -13.15219 -12.98392 -12.88015 -12.78035 -12.63838 -12.41106 -11.80043 -11.77663 -11.14845 -11.12397 -10.83584 -10.33329 -10.26974 -9.86757 -9.82208 -9.23526 -8.70725 -8.36409 -6.15663 -0.19252 0.66318 0.97443 0.99527 1.14896 1.39480 1.42968 1.48514 1.51966 1.78578 2.24335 2.26502 2.27807 2.97470 3.11238 3.30653 3.53475 3.76257 3.82853 3.92952 4.05300 4.22861 4.23521 4.37005 4.41809 4.43336 4.50912 4.57572 4.66958 4.73517 4.79499 4.82289 4.87882 5.03079 5.31295 5.37742 5.39322 5.58747 6.17561 6.40282 6.50740 7.02899 7.04406 7.16956 8.72613 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.022484 B = 0.001844 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.015825 B =15177.235533 C =15680.231999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.078 4.078 3 C -0.250 4.250 4 S 0.237 5.763 5 C -0.202 4.202 6 C -0.183 4.183 7 C 0.580 3.420 8 O -0.567 6.567 9 N -0.698 5.698 10 C 0.130 3.870 11 C 0.089 3.911 12 N -0.647 5.647 13 C 0.559 3.441 14 O -0.564 6.564 15 C -0.121 4.121 16 S -0.148 6.148 17 C -0.548 4.548 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.910 5.910 21 Si 1.000 3.000 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.261 1.261 25 C 0.104 3.896 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.186 0.814 30 H 0.199 0.801 31 H 0.418 0.582 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.272 0.728 38 H 0.085 0.915 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.572 35.381 -5.674 36.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.088 4.088 3 C -0.385 4.385 4 S 0.505 5.495 5 C -0.340 4.340 6 C -0.202 4.202 7 C 0.367 3.633 8 O -0.447 6.447 9 N -0.351 5.351 10 C 0.023 3.977 11 C -0.034 4.034 12 N -0.384 5.384 13 C 0.348 3.652 14 O -0.442 6.442 15 C -0.272 4.272 16 S 0.079 5.921 17 C -0.696 4.696 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.546 5.546 21 Si 0.821 3.179 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.018 4.018 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.203 0.797 30 H 0.216 0.784 31 H 0.257 0.743 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.639 34.635 -6.937 36.139 hybrid contribution -1.771 -0.829 1.681 2.579 sum 5.868 33.806 -5.255 34.712 Atomic orbital electron populations 1.20588 0.89310 1.03319 1.02573 1.19998 0.97635 0.90692 1.00494 1.25629 0.97451 1.03097 1.12275 1.83014 1.03911 0.95342 1.67238 1.26062 0.99149 1.04708 1.04110 1.20041 0.93177 0.93259 1.13709 1.17923 0.85954 0.84462 0.74946 1.90771 1.15806 1.86912 1.51185 1.45523 1.10732 1.03898 1.74964 1.22731 0.98984 0.80119 0.95845 1.24032 1.02840 0.80297 0.96206 1.49681 1.63886 1.02900 1.21962 1.19654 0.77280 0.80639 0.87603 1.90696 1.50121 1.56335 1.47081 1.23280 1.04826 1.00951 0.98111 1.85544 1.83537 0.98222 1.24764 1.23148 1.48582 0.95780 1.02071 0.90006 1.26146 0.95342 0.94690 1.02958 1.70173 1.45973 0.99842 1.38657 0.84992 0.78953 0.77403 0.76570 1.18738 1.20247 1.18552 1.23673 1.00325 0.85773 0.92052 0.91437 0.91353 0.90329 0.79691 0.78352 0.74316 0.86766 0.86617 0.89220 0.87500 0.87880 0.91907 0.89622 0.86378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 9.55 71.24 0.68 -0.91 16 2 C -0.08 -1.16 6.01 -19.46 -0.12 -1.28 16 3 C -0.25 -2.44 10.91 66.64 0.73 -1.72 16 4 S 0.24 1.45 23.02 -56.49 -1.30 0.15 16 5 C -0.20 -1.54 10.38 67.30 0.70 -0.84 16 6 C -0.18 -2.63 5.98 -19.87 -0.12 -2.75 16 7 C 0.58 10.46 7.79 86.59 0.67 11.13 16 8 O -0.57 -14.77 13.83 -4.16 -0.06 -14.82 16 9 N -0.70 -8.38 5.34 -450.89 -2.41 -10.79 16 10 C 0.13 2.12 4.40 46.75 0.21 2.32 16 11 C 0.09 1.62 8.43 86.44 0.73 2.35 16 12 N -0.65 -17.18 3.61 -836.57 -3.02 -20.20 16 13 C 0.56 21.73 8.08 87.66 0.71 22.44 16 14 O -0.56 -27.12 16.59 -3.04 -0.05 -27.17 16 15 C -0.12 -5.02 5.91 71.24 0.42 -4.60 16 16 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 17 C -0.55 -31.78 9.50 67.95 0.65 -31.14 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.78 5.49 84.86 0.47 1.24 16 20 N -0.91 -56.37 13.22 21.65 0.29 -56.08 16 21 Si 1.00 43.97 29.55 68.60 2.03 46.00 16 22 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 25 C 0.10 1.88 8.59 86.49 0.74 2.62 16 26 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.07 1.45 6.02 -2.38 -0.01 1.44 16 28 H 0.08 0.93 8.13 -2.39 -0.02 0.91 16 29 H 0.19 1.02 8.06 -2.91 -0.02 1.00 16 30 H 0.20 0.16 7.01 -2.91 -0.02 0.14 16 31 H 0.42 2.07 7.21 -92.71 -0.67 1.40 16 32 H 0.11 2.35 7.51 -2.38 -0.02 2.33 16 33 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 36 H 0.10 3.98 8.14 -2.40 -0.02 3.96 16 37 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 38 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 39 H 0.12 1.40 8.11 -2.39 -0.02 1.38 16 Total: -1.00 -84.67 365.08 1.20 -83.47 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.43 Total: 10.13 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 6.46 Total: -1.13 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -5.14 Total: -87.07 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -0.11 Total: -42.00 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -6.94 SS G_CDS: -2.46 Total: -9.40 kcal Total: -84.67 1.20 -83.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530394011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.729 kcal (2) G-P(sol) polarization free energy of solvation -84.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds