Wall clock time and date at job start Sat Apr 11 2020 05:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34235 * 116.99473 * 2 1 4 4 O 1.20823 * 119.99863 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99750 * 180.02562 * 3 2 1 6 6 N 1.46504 * 109.46772 * 179.97438 * 5 3 2 7 7 C 1.36935 * 119.99893 * 273.59051 * 6 5 3 8 8 H 1.08002 * 119.99632 * 180.41230 * 7 6 5 9 9 C 1.38806 * 120.00314 * 0.41789 * 7 6 5 10 10 N 1.31619 * 119.99884 * 26.97084 * 9 7 6 11 11 Si 1.86802 * 120.00125 * 206.97533 * 9 7 6 12 12 H 1.48500 * 109.47116 * 84.98971 * 11 9 7 13 13 H 1.48501 * 109.46953 * 204.98645 * 11 9 7 14 14 H 1.48494 * 109.46942 * 324.99123 * 11 9 7 15 15 S 1.65603 * 119.99750 * 93.59258 * 6 5 3 16 16 O 1.42108 * 106.39831 * 156.46143 * 15 6 5 17 17 O 1.42097 * 106.40643 * 23.53994 * 15 6 5 18 18 C 1.76198 * 107.21728 * 269.99658 * 15 6 5 19 19 C 1.35877 * 126.75463 * 114.97789 * 18 15 6 20 20 N 1.33483 * 110.87251 * 180.02562 * 19 18 15 21 21 C 1.31622 * 110.88346 * 0.02562 * 20 19 18 22 22 N 1.37387 * 135.89416 * 179.97438 * 21 20 19 23 23 H 0.96994 * 120.32338 * 359.97438 * 22 21 20 24 24 C 1.34076 * 119.35183 * 179.97438 * 22 21 20 25 25 N 1.30940 * 123.17367 * 0.02562 * 24 22 21 26 26 C 1.32822 * 122.74831 * 0.02562 * 25 24 22 27 27 C 1.38881 * 119.03862 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47328 * 299.99644 * 1 2 3 29 29 H 1.08995 * 109.47744 * 60.00520 * 1 2 3 30 30 H 1.09007 * 109.46614 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47601 * 60.00096 * 5 3 2 32 32 H 1.09003 * 109.46877 * 299.99537 * 5 3 2 33 33 H 0.97007 * 120.00234 * 180.02562 * 10 9 7 34 34 H 1.08001 * 124.55987 * 0.06150 * 19 18 15 35 35 H 1.08007 * 118.41023 * 179.97438 * 24 22 21 36 36 H 1.08002 * 120.48170 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 7 3.9815 2.6800 -0.0011 7 6 4.1038 3.3573 -1.1849 8 1 4.4164 4.3912 -1.1856 9 6 3.8261 2.7154 -2.3838 10 7 2.9785 1.7088 -2.4104 11 14 4.6554 3.2799 -3.9596 12 1 5.9835 2.6268 -4.0814 13 1 3.8120 2.9074 -5.1237 14 1 4.8301 4.7542 -3.9262 15 16 4.3028 3.4489 1.4300 16 8 5.1708 4.5301 1.1184 17 8 4.6328 2.4324 2.3665 18 6 2.7933 4.1672 1.9866 19 6 2.0997 3.8358 3.1070 20 7 0.9984 4.5813 3.2225 21 6 0.8960 5.4258 2.2181 22 7 0.0031 6.3959 1.8321 23 1 -0.7832 6.5796 2.3695 24 6 0.2293 7.0863 0.7052 25 7 1.2710 6.8844 -0.0620 26 6 2.1983 5.9734 0.2107 27 6 2.0659 5.1984 1.3556 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 3.9557 0.7812 -0.8908 32 1 3.9563 0.7808 0.8892 33 1 2.7847 1.2599 -3.2482 34 1 2.3994 3.0725 3.8098 35 1 -0.4828 7.8452 0.4158 36 1 3.0435 5.8378 -0.4478 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001561271018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:29 Heat of formation + Delta-G solvation = -32.013782 kcal Electronic energy + Delta-G solvation = -29074.755735 eV Core-core repulsion = 24882.118499 eV Total energy + Delta-G solvation = -4192.637236 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.072 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.46230 -39.22862 -38.31816 -36.16232 -35.93129 -34.83225 -34.75576 -34.52151 -31.55872 -30.09757 -28.83125 -28.33364 -26.30080 -24.60272 -23.95992 -23.12345 -21.05719 -20.24578 -18.77046 -18.16246 -17.96418 -17.02212 -16.84169 -16.61558 -16.43443 -15.45963 -15.35415 -15.29982 -15.08575 -14.49313 -14.43492 -14.27476 -13.36071 -12.96371 -12.73472 -12.67963 -12.64977 -12.57718 -11.87284 -11.63992 -11.45372 -11.31531 -11.10337 -10.92849 -10.86703 -10.65410 -10.33355 -10.28265 -10.15668 -10.12005 -9.90642 -9.81355 -9.24792 -9.02347 -8.35236 -8.23213 -7.77342 -6.62088 -3.93608 0.28576 1.57078 1.78670 2.34024 3.12868 3.19584 3.24101 3.44236 3.57948 3.72835 3.81419 4.02972 4.05002 4.35637 4.51069 4.70473 4.83789 5.04747 5.17167 5.33179 5.57752 5.66784 5.74000 5.89594 5.90421 6.00071 6.09346 6.22399 6.45073 6.55755 6.66017 6.97173 7.03421 7.27870 7.31152 7.49606 7.80977 8.14794 8.17036 8.63836 8.98153 9.11122 10.41065 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.010089 B = 0.006612 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.633872 B = 4233.818442 C = 4691.637804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.373 6.373 3 C 0.472 3.528 4 O -0.499 6.499 5 C 0.146 3.854 6 N -0.799 5.799 7 C -0.258 4.258 8 H 0.119 0.881 9 C 0.034 3.966 10 N -0.852 5.852 11 Si 0.930 3.070 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.265 1.265 15 S 2.604 3.396 16 O -0.979 6.979 17 O -0.996 6.996 18 C -0.731 4.731 19 C 0.158 3.842 20 N -0.535 5.535 21 C 0.267 3.733 22 N -0.529 5.529 23 H 0.421 0.579 24 C 0.336 3.664 25 N -0.523 5.523 26 C 0.217 3.783 27 C -0.109 4.109 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.142 0.858 32 H 0.093 0.907 33 H 0.276 0.724 34 H 0.169 0.831 35 H 0.212 0.788 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 4.057 1.913 8.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.290 6.290 3 C 0.312 3.688 4 O -0.384 6.384 5 C 0.017 3.983 6 N -0.623 5.623 7 C -0.399 4.399 8 H 0.137 0.863 9 C -0.175 4.175 10 N -0.493 5.493 11 Si 0.756 3.244 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.189 1.189 15 S 2.700 3.300 16 O -0.969 6.969 17 O -0.987 6.987 18 C -0.819 4.819 19 C 0.010 3.990 20 N -0.256 5.256 21 C 0.016 3.984 22 N -0.133 5.133 23 H 0.259 0.741 24 C 0.053 3.947 25 N -0.241 5.241 26 C 0.067 3.933 27 C -0.119 4.119 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.159 0.841 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.186 0.814 35 H 0.229 0.771 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -7.181 4.653 2.524 8.921 hybrid contribution -1.152 0.033 -0.579 1.290 sum -8.333 4.686 1.945 9.757 Atomic orbital electron populations 1.22901 0.79114 1.01708 1.01355 1.86498 1.21344 1.35681 1.85488 1.24557 0.92796 0.80692 0.70753 1.90545 1.66521 1.36149 1.45231 1.21230 0.86591 0.85093 1.05383 1.54990 1.73860 1.14492 1.18964 1.19838 1.38455 0.99641 0.81937 0.86323 1.25299 0.95608 0.97029 0.99549 1.69945 1.28211 1.22725 1.28408 0.85867 0.79274 0.79683 0.79600 1.19714 1.21055 1.18937 1.07510 0.76474 0.72792 0.73253 1.93398 1.64655 1.54920 1.83951 1.93374 1.84541 1.57868 1.62879 1.32554 1.28642 1.12902 1.07814 1.22163 0.88086 0.94654 0.94083 1.69427 1.22945 1.09387 1.23846 1.20822 0.90076 0.92121 0.95367 1.41954 1.22080 1.27677 1.21557 0.74095 1.24843 0.95806 0.92905 0.81131 1.67972 1.03673 1.22559 1.29932 1.23050 0.94156 0.84579 0.91516 1.20199 0.95812 0.99317 0.96606 0.93401 0.92825 0.89716 0.84104 0.88910 0.91355 0.81401 0.77139 0.80189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.56 101.05 1.07 1.81 16 2 O -0.37 -7.70 10.57 -39.27 -0.41 -8.12 16 3 C 0.47 10.88 6.10 36.00 0.22 11.10 16 4 O -0.50 -12.56 15.53 -18.75 -0.29 -12.85 16 5 C 0.15 3.27 5.53 -5.19 -0.03 3.24 16 6 N -0.80 -18.90 2.43 -61.09 -0.15 -19.05 16 7 C -0.26 -6.16 9.20 -15.06 -0.14 -6.30 16 8 H 0.12 2.78 6.33 -52.49 -0.33 2.45 16 9 C 0.03 0.78 4.98 -17.43 -0.09 0.70 16 10 N -0.85 -20.26 8.97 55.49 0.50 -19.77 16 11 Si 0.93 18.52 29.63 -169.99 -5.04 13.49 16 12 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 13 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 14 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 15 S 2.60 61.63 5.82 -107.50 -0.63 61.00 16 16 O -0.98 -24.64 16.83 -57.17 -0.96 -25.60 16 17 O -1.00 -24.20 16.35 -57.17 -0.93 -25.14 16 18 C -0.73 -16.51 5.75 -39.35 -0.23 -16.74 16 19 C 0.16 3.38 11.38 -17.68 -0.20 3.18 16 20 N -0.53 -10.89 11.16 -11.02 -0.12 -11.01 16 21 C 0.27 4.96 8.71 -153.97 -1.34 3.62 16 22 N -0.53 -6.43 5.35 -12.04 -0.06 -6.50 16 23 H 0.42 3.27 8.93 -40.82 -0.36 2.90 16 24 C 0.34 3.65 12.25 -90.88 -1.11 2.54 16 25 N -0.52 -8.10 10.30 -14.07 -0.14 -8.24 16 26 C 0.22 4.19 11.35 -16.89 -0.19 3.99 16 27 C -0.11 -2.29 6.45 -104.98 -0.68 -2.97 16 28 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 29 H 0.05 0.95 8.13 -51.93 -0.42 0.52 16 30 H 0.08 1.11 8.14 -51.92 -0.42 0.68 16 31 H 0.14 3.15 6.04 -51.93 -0.31 2.84 16 32 H 0.09 1.92 6.94 -51.93 -0.36 1.56 16 33 H 0.28 6.27 8.31 -40.82 -0.34 5.93 16 34 H 0.17 3.26 8.06 -52.49 -0.42 2.84 16 35 H 0.21 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.18 3.54 6.89 -52.49 -0.36 3.18 16 LS Contribution 330.46 15.07 4.98 4.98 Total: -1.00 -34.99 330.46 -8.97 -43.95 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -2.98 Total: 8.69 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -2.72 Total: 4.17 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: 0.02 Total: -64.57 kcal Atomic # 8 Polarization: -69.11 SS G_CDS: -2.60 Total: -71.71 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.04 Total: 13.49 kcal Atomic # 16 Polarization: 61.63 SS G_CDS: -0.63 Total: 61.00 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.99 -8.97 -43.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001561271018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.939 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds