Wall clock time and date at job start Sat Apr 11 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46980 * 96.56431 * 3 2 1 5 5 C 1.36864 * 120.00494 * 270.58151 * 4 3 2 6 6 H 1.08000 * 120.00628 * 197.04543 * 5 4 3 7 7 C 1.39049 * 119.99909 * 17.04353 * 5 4 3 8 8 N 1.31364 * 119.99782 * 21.42134 * 7 5 4 9 9 Si 1.86805 * 120.00261 * 201.41638 * 7 5 4 10 10 H 1.48500 * 109.46982 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.46964 * 119.99716 * 9 7 5 12 12 H 1.48496 * 109.47335 * 239.99990 * 9 7 5 13 13 C 1.34783 * 119.99975 * 90.58508 * 4 3 2 14 14 O 1.21587 * 120.00293 * 185.11793 * 13 4 3 15 15 C 1.47732 * 119.99681 * 5.11615 * 13 4 3 16 16 C 1.39662 * 120.14157 * 54.98203 * 15 13 4 17 17 C 1.37928 * 119.89745 * 180.25097 * 16 15 13 18 18 S 1.76202 * 119.90836 * 179.78838 * 17 16 15 19 19 N 1.65600 * 107.22148 * 269.97985 * 18 17 16 20 20 O 1.42099 * 106.39966 * 23.52342 * 18 17 16 21 21 O 1.42095 * 106.40099 * 156.44131 * 18 17 16 22 22 C 1.38357 * 120.18205 * 359.77420 * 17 16 15 23 23 C 1.38572 * 120.27904 * 359.97438 * 22 17 16 24 24 F 1.35102 * 119.94799 * 180.02562 * 23 22 17 25 25 C 1.38190 * 120.09738 * 359.97438 * 23 22 17 26 26 C 1.50700 * 120.08655 * 180.02562 * 25 23 22 27 27 H 4.40636 * 5.51423 * 180.02562 * 4 1 2 28 28 H 1.09001 * 109.47239 * 336.56874 * 3 2 1 29 29 H 1.09000 * 109.47194 * 216.56412 * 3 2 1 30 30 H 0.97000 * 119.99926 * 180.02562 * 8 7 5 31 31 H 1.07998 * 120.04832 * 0.02562 * 16 15 13 32 32 H 0.96998 * 119.99915 * 0.02562 * 19 18 17 33 33 H 0.96999 * 119.99807 * 179.97438 * 19 18 17 34 34 H 1.07999 * 119.86365 * 180.02562 * 22 17 16 35 35 H 1.08999 * 109.47634 * 85.88385 * 26 25 23 36 36 H 1.09003 * 109.46678 * 205.88349 * 26 25 23 37 37 H 1.09001 * 109.47348 * 325.87796 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1588 -1.3721 5 6 3.3515 -0.9443 -2.1527 6 1 3.9579 -0.8651 -3.0429 7 6 2.7916 -2.1671 -1.7995 8 7 1.7480 -2.2059 -1.0027 9 14 3.5234 -3.7546 -2.4582 10 1 4.6853 -3.4405 -3.3280 11 1 3.9699 -4.6021 -1.3235 12 1 2.4971 -4.4831 -3.2464 13 6 3.3696 1.3906 -1.8660 14 8 3.6850 1.5281 -3.0321 15 6 3.2441 2.5738 -0.9903 16 6 3.9648 2.6418 0.2041 17 6 3.8399 3.7465 1.0205 18 16 4.7447 3.8302 2.5301 19 7 3.7953 3.1578 3.7086 20 8 5.8636 2.9679 2.3756 21 8 4.8648 5.2094 2.8500 22 6 3.0064 4.7893 0.6570 23 6 2.2919 4.7319 -0.5289 24 9 1.4803 5.7542 -0.8775 25 6 2.4091 3.6311 -1.3560 26 6 1.6324 3.5692 -2.6459 27 1 -1.0500 0.0002 0.0000 28 1 3.0098 -0.9421 0.4086 29 1 3.0090 0.8262 0.6122 30 1 1.3576 -3.0589 -0.7560 31 1 4.6160 1.8290 0.4898 32 1 2.9165 2.8131 3.4855 33 1 4.1183 3.1081 4.6219 34 1 2.9128 5.6521 1.2999 35 1 2.1945 4.0718 -3.4330 36 1 1.4712 2.5274 -2.9232 37 1 0.6698 4.0633 -2.5145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567960656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:34 Heat of formation + Delta-G solvation = -51.097696 kcal Electronic energy + Delta-G solvation = -27824.167143 eV Core-core repulsion = 23610.782405 eV Total energy + Delta-G solvation = -4213.384739 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.073 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.93843 -39.98269 -37.86484 -37.21912 -35.91543 -35.45796 -33.33875 -32.93639 -32.32852 -31.52039 -30.66929 -27.50837 -26.61909 -25.30442 -23.34418 -22.21003 -20.50365 -19.37626 -18.31126 -18.05729 -17.53282 -17.02124 -16.82554 -16.65453 -16.12511 -15.83227 -15.63131 -15.36309 -15.03936 -14.74048 -14.41508 -14.03042 -13.41610 -13.25186 -13.02157 -12.86006 -12.45661 -12.34191 -12.24939 -12.16745 -12.10760 -12.05268 -11.87371 -11.77334 -11.51673 -11.16589 -10.97770 -10.64487 -10.63477 -10.46978 -9.50980 -9.48049 -9.11644 -9.10695 -8.84087 -8.59158 -8.12715 -6.51980 -4.06653 0.23757 0.59084 0.94309 2.84501 3.00070 3.12453 3.15128 3.21536 3.45359 3.57176 3.84372 3.95615 4.03833 4.13124 4.33223 4.68274 4.73976 4.83560 4.86693 4.93061 5.23732 5.40000 5.41855 5.58470 5.72499 5.83596 5.84197 5.87346 5.91794 6.07736 6.21113 6.40833 6.49481 6.70676 6.86557 6.90994 7.34051 7.77307 8.17291 8.76918 8.87202 9.07262 9.61614 10.41779 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.012365 B = 0.004573 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.844920 B = 6121.523935 C = 7118.242968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.109 4.109 3 C 0.223 3.777 4 N -0.419 5.419 5 C -0.312 4.312 6 H 0.111 0.889 7 C 0.034 3.966 8 N -0.847 5.847 9 Si 0.926 3.074 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.474 3.526 14 O -0.569 6.569 15 C -0.080 4.080 16 C -0.010 4.010 17 C -0.662 4.662 18 S 2.707 3.293 19 N -1.250 6.250 20 O -0.957 6.957 21 O -0.964 6.964 22 C -0.053 4.053 23 C 0.075 3.925 24 F -0.133 7.133 25 C -0.021 4.021 26 C -0.120 4.120 27 H 0.198 0.802 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.272 0.728 31 H 0.155 0.845 32 H 0.419 0.581 33 H 0.420 0.580 34 H 0.153 0.847 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.334 8.264 9.677 12.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.111 4.111 3 C 0.101 3.899 4 N -0.135 5.135 5 C -0.439 4.439 6 H 0.128 0.872 7 C -0.173 4.173 8 N -0.482 5.482 9 Si 0.752 3.248 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.263 3.737 14 O -0.454 6.454 15 C -0.085 4.085 16 C -0.030 4.030 17 C -0.749 4.749 18 S 2.795 3.205 19 N -0.925 5.925 20 O -0.946 6.946 21 O -0.954 6.954 22 C -0.073 4.073 23 C 0.055 3.945 24 F -0.111 7.111 25 C -0.023 4.023 26 C -0.177 4.177 27 H 0.215 0.785 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.172 0.828 32 H 0.247 0.753 33 H 0.250 0.750 34 H 0.171 0.829 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.330 8.596 9.121 12.538 hybrid contribution -1.176 -1.094 -0.432 1.663 sum -1.505 7.503 8.689 11.578 Atomic orbital electron populations 1.24175 0.95247 1.06320 1.01646 1.22750 0.93956 0.95630 0.98723 1.18466 0.85145 1.01789 0.84541 1.43721 1.54219 1.04662 1.10865 1.19813 1.29779 0.84518 1.09827 0.87183 1.25437 0.94504 1.00067 0.97267 1.70058 1.17116 1.26761 1.34311 0.85865 0.79403 0.80709 0.78841 1.18912 1.20312 1.20663 1.17586 0.87048 0.82021 0.87048 1.90666 1.53587 1.84711 1.16395 1.20229 0.96898 0.96183 0.95199 1.21203 0.94643 0.95427 0.91705 1.30261 1.18444 1.02825 1.23385 1.01441 0.72721 0.73733 0.72638 1.53023 1.33362 1.81726 1.24368 1.93629 1.48172 1.67158 1.85660 1.93594 1.85132 1.33518 1.83128 1.20782 0.93156 0.97803 0.95583 1.17311 0.95080 0.86463 0.95674 1.91498 1.70589 1.56948 1.92090 1.20284 0.94630 0.91222 0.96199 1.20888 0.98567 1.05217 0.92982 0.78508 0.87612 0.91573 0.91683 0.82794 0.75338 0.74977 0.82899 0.89553 0.89319 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.99 19.12 29.55 0.57 -4.43 16 2 C -0.11 -2.28 11.00 -37.12 -0.41 -2.69 16 3 C 0.22 4.57 4.99 -6.83 -0.03 4.54 16 4 N -0.42 -9.84 2.58 -119.05 -0.31 -10.15 16 5 C -0.31 -7.98 9.30 -15.00 -0.14 -8.12 16 6 H 0.11 2.97 7.42 -52.49 -0.39 2.58 16 7 C 0.03 0.81 4.90 -17.45 -0.09 0.73 16 8 N -0.85 -20.51 9.00 55.50 0.50 -20.01 16 9 Si 0.93 19.13 29.60 -169.99 -5.03 14.10 16 10 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 11 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 12 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 13 C 0.47 10.92 5.99 -12.38 -0.07 10.85 16 14 O -0.57 -14.87 15.68 5.29 0.08 -14.79 16 15 C -0.08 -1.51 4.94 -104.98 -0.52 -2.03 16 16 C -0.01 -0.15 6.99 -39.16 -0.27 -0.43 16 17 C -0.66 -8.84 5.94 -39.65 -0.24 -9.07 16 18 S 2.71 31.33 6.28 -107.50 -0.67 30.65 16 19 N -1.25 -9.23 9.55 60.35 0.58 -8.65 16 20 O -0.96 -14.16 17.27 -57.17 -0.99 -15.15 16 21 O -0.96 -13.26 17.27 -57.17 -0.99 -14.25 16 22 C -0.05 -0.70 9.50 -39.41 -0.37 -1.07 16 23 C 0.07 1.12 7.23 -39.48 -0.29 0.84 16 24 F -0.13 -1.90 16.54 2.25 0.04 -1.86 16 25 C -0.02 -0.36 5.92 -104.13 -0.62 -0.98 16 26 C -0.12 -2.01 9.04 36.01 0.33 -1.68 16 27 H 0.20 3.17 7.80 -54.09 -0.42 2.74 16 28 H 0.11 2.23 6.85 -51.93 -0.36 1.87 16 29 H 0.07 1.12 4.40 -51.93 -0.23 0.89 16 30 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 31 H 0.15 2.34 7.01 -52.49 -0.37 1.97 16 32 H 0.42 2.39 8.92 -34.47 -0.31 2.08 16 33 H 0.42 2.22 8.96 -34.47 -0.31 1.91 16 34 H 0.15 1.64 7.60 -52.49 -0.40 1.24 16 35 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.09 1.73 6.62 -51.93 -0.34 1.38 16 37 H 0.07 1.01 7.76 -51.93 -0.40 0.61 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -33.24 339.76 -6.91 -40.16 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -3.08 Total: 8.38 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -2.16 Total: -13.56 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.77 Total: -38.81 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -1.89 Total: -44.18 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Atomic # 16 Polarization: 31.33 SS G_CDS: -0.67 Total: 30.65 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.24 -6.91 -40.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567960656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.942 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds