Wall clock time and date at job start Sat Apr 11 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00012 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99895 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00502 * 3 2 1 7 7 C 1.38803 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99611 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99871 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47038 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99654 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99768 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99561 * 180.02562 * 13 11 10 15 15 H 1.09000 * 112.85353 * 334.66996 * 14 13 11 16 16 C 1.53785 * 113.61159 * 105.86718 * 14 13 11 17 17 C 1.54049 * 86.98392 * 89.15861 * 16 14 13 18 18 H 1.08993 * 113.69147 * 270.86808 * 17 16 14 19 19 N 1.46510 * 113.61694 * 139.97788 * 17 16 14 20 20 C 1.34771 * 119.99794 * 107.50213 * 19 17 16 21 21 O 1.21697 * 120.00080 * 0.02562 * 20 19 17 22 22 C 1.46583 * 119.99930 * 179.97438 * 20 19 17 23 23 C 1.36648 * 125.46092 * 179.72410 * 22 20 19 24 24 C 1.37473 * 113.29576 * 179.83962 * 23 22 20 25 25 C 1.33814 * 115.10067 * 0.45140 * 24 23 22 26 26 S 1.70615 * 110.95757 * 359.74804 * 25 24 23 27 27 C 1.53779 * 113.61276 * 203.47324 * 14 13 11 28 28 H 0.97000 * 120.00071 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47385 * 299.99958 * 10 9 7 30 30 H 1.09005 * 109.47046 * 60.00120 * 10 9 7 31 31 H 0.96993 * 120.00373 * 0.02562 * 13 11 10 32 32 H 1.08995 * 113.61080 * 203.66256 * 16 14 13 33 33 H 1.09004 * 113.61399 * 334.56575 * 16 14 13 34 34 H 0.96993 * 119.99660 * 287.50716 * 19 17 16 35 35 H 1.07997 * 123.34973 * 0.02562 * 23 22 20 36 36 H 1.08003 * 122.44311 * 180.17545 * 24 23 22 37 37 H 1.08006 * 124.51660 * 179.77208 * 25 24 23 38 38 H 1.08998 * 113.61640 * 25.42850 * 27 14 13 39 39 H 1.08998 * 113.61658 * 156.33890 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7913 -5.5023 0.0000 13 7 2.8444 -6.3430 -0.0003 14 6 2.3306 -7.7150 -0.0003 15 1 1.3321 -7.7932 0.4298 16 6 2.4749 -8.4269 -1.3558 17 6 3.8627 -8.8897 -0.8731 18 1 4.6647 -8.1911 -1.1112 19 7 4.1825 -10.2707 -1.2434 20 6 5.0923 -10.5164 -2.2068 21 8 5.6486 -9.5913 -2.7688 22 6 5.4127 -11.8981 -2.5771 23 6 6.3093 -12.2739 -3.5374 24 6 6.4173 -13.6373 -3.6765 25 6 5.6304 -14.3548 -2.8662 26 16 4.6994 -13.3373 -1.8617 27 6 3.3252 -8.7452 0.5605 28 1 -0.4850 -0.8400 -0.0004 29 1 3.1246 -3.7313 -0.8905 30 1 3.1246 -3.7313 0.8895 31 1 3.8011 -6.1834 -0.0006 32 1 1.7672 -9.2435 -1.4975 33 1 2.5117 -7.7449 -2.2054 34 1 3.7393 -11.0079 -0.7953 35 1 6.8786 -11.5700 -4.1262 36 1 7.0851 -14.0957 -4.3909 37 1 5.5903 -15.4340 -2.8499 38 1 4.0480 -8.3201 1.2569 39 1 2.8495 -9.6488 0.9417 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578437582.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:41 Heat of formation + Delta-G solvation = -23.227535 kcal Electronic energy + Delta-G solvation = -22953.782606 eV Core-core repulsion = 19307.819585 eV Total energy + Delta-G solvation = -3645.963022 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.74733 -39.60835 -38.29638 -37.60638 -34.39515 -32.64402 -32.51975 -30.33439 -29.15213 -26.09507 -25.98078 -24.86742 -24.18164 -21.79473 -21.08543 -20.11883 -19.52854 -18.91293 -18.33601 -17.14100 -16.43616 -16.37021 -16.08667 -15.71043 -15.44773 -15.01025 -14.70663 -14.23664 -13.95779 -13.81413 -13.47798 -13.31527 -13.29988 -12.98213 -12.90609 -12.83481 -12.47633 -12.36761 -12.03069 -11.78531 -11.55214 -11.15667 -10.91155 -10.87520 -10.44010 -10.16546 -9.59216 -9.57949 -9.54102 -9.34146 -9.14037 -9.03498 -8.97099 -8.22589 -6.67033 -6.61724 -3.99670 -0.01397 0.92411 1.32345 1.89478 2.67867 2.77151 2.86317 2.92956 3.35345 3.38917 3.51750 3.59410 4.05240 4.23401 4.25671 4.33561 4.47568 4.60984 4.69508 4.78260 4.95651 4.99588 5.22995 5.25694 5.28686 5.39623 5.41976 5.51671 5.54054 5.65968 5.75713 5.77201 5.79347 5.84053 6.01467 6.06092 6.55641 6.99592 7.56962 7.72554 7.92581 8.47072 8.50536 9.27440 10.82182 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.031213 B = 0.001698 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.847556 B =16484.820356 C =17075.533657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.035 3.965 3 Si 1.084 2.916 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.066 0.934 9 S -0.115 6.115 10 C -0.132 4.132 11 C 0.535 3.465 12 O -0.515 6.515 13 N -0.721 5.721 14 C 0.129 3.871 15 H 0.110 0.890 16 C -0.164 4.164 17 C 0.122 3.878 18 H 0.119 0.881 19 N -0.715 5.715 20 C 0.591 3.409 21 O -0.525 6.525 22 C -0.268 4.268 23 C -0.054 4.054 24 C -0.150 4.150 25 C -0.228 4.228 26 S 0.198 5.802 27 C -0.152 4.152 28 H 0.278 0.722 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.400 0.600 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.398 0.602 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.170 0.830 38 H 0.084 0.916 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.047 -32.227 -2.325 34.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.175 4.175 3 Si 0.910 3.090 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.756 4.756 8 H 0.084 0.916 9 S 0.111 5.889 10 C -0.283 4.283 11 C 0.321 3.679 12 O -0.389 6.389 13 N -0.375 5.375 14 C 0.022 3.978 15 H 0.128 0.872 16 C -0.205 4.205 17 C 0.018 3.982 18 H 0.137 0.863 19 N -0.366 5.366 20 C 0.377 3.623 21 O -0.402 6.402 22 C -0.388 4.388 23 C -0.088 4.088 24 C -0.181 4.181 25 C -0.366 4.366 26 S 0.465 5.535 27 C -0.191 4.191 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.234 0.766 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.233 0.767 35 H 0.172 0.828 36 H 0.165 0.835 37 H 0.187 0.813 38 H 0.102 0.898 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.134 -30.508 -1.582 32.186 hybrid contribution 3.200 -1.707 -1.038 3.772 sum 13.334 -32.215 -2.620 34.964 Atomic orbital electron populations 1.70800 1.06701 1.30951 1.43328 1.26055 0.96321 1.02135 0.92992 0.83330 0.74760 0.74194 0.76723 1.20275 1.21140 1.21123 1.23709 0.96050 0.92183 1.63669 0.91583 1.84808 1.08032 0.98811 1.97235 1.23328 1.05210 0.94384 1.05386 1.20309 0.86545 0.86241 0.74799 1.90702 1.15333 1.85518 1.47360 1.45697 1.09880 1.04548 1.77358 1.21531 0.98985 0.81042 0.96224 0.87242 1.24017 0.96570 1.00768 0.99111 1.22794 0.97499 0.82824 0.95120 0.86323 1.45857 1.42625 1.08968 1.39122 1.16999 0.79095 0.86663 0.79557 1.90861 1.51895 1.44493 1.52989 1.24681 1.09129 0.97034 1.07981 1.20865 0.96128 0.95961 0.95808 1.20096 1.02559 0.92996 1.02417 1.25349 1.03228 1.05214 1.02787 1.82982 1.39567 0.94411 1.36558 1.23748 0.99197 0.99968 0.96209 0.91007 0.88814 0.88846 0.76554 0.88830 0.90121 0.76737 0.82751 0.83536 0.81259 0.89755 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.61 13.67 55.49 0.76 -26.85 16 2 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 3 Si 1.08 25.08 29.92 -169.99 -5.09 19.99 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.61 -17.62 9.50 30.94 0.29 -17.33 16 8 H 0.07 1.83 7.80 -52.48 -0.41 1.42 16 9 S -0.12 -3.11 19.60 -107.50 -2.11 -5.21 16 10 C -0.13 -2.66 6.16 36.01 0.22 -2.43 16 11 C 0.53 9.73 7.85 -10.98 -0.09 9.65 16 12 O -0.52 -11.39 15.48 5.56 0.09 -11.31 16 13 N -0.72 -9.19 5.26 -53.01 -0.28 -9.47 16 14 C 0.13 1.37 4.30 -67.12 -0.29 1.09 16 15 H 0.11 1.33 7.50 -51.93 -0.39 0.94 16 16 C -0.16 -1.63 7.70 -25.78 -0.20 -1.83 16 17 C 0.12 1.05 4.13 -66.97 -0.28 0.78 16 18 H 0.12 1.20 7.46 -51.93 -0.39 0.81 16 19 N -0.72 -5.63 5.35 -54.21 -0.29 -5.92 16 20 C 0.59 6.14 7.78 -12.90 -0.10 6.04 16 21 O -0.52 -7.48 16.44 5.19 0.09 -7.39 16 22 C -0.27 -2.21 6.45 -36.79 -0.24 -2.45 16 23 C -0.05 -0.42 10.01 -40.43 -0.40 -0.82 16 24 C -0.15 -0.84 10.15 -41.41 -0.42 -1.26 16 25 C -0.23 -1.08 10.92 29.18 0.32 -0.76 16 26 S 0.20 1.01 22.16 -107.50 -2.38 -1.38 16 27 C -0.15 -1.08 7.57 -25.92 -0.20 -1.28 16 28 H 0.28 8.85 7.13 -40.82 -0.29 8.56 16 29 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 30 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 31 H 0.40 4.06 8.70 -40.82 -0.36 3.70 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.40 2.12 7.84 -40.82 -0.32 1.80 16 35 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16 37 H 0.17 0.39 8.06 -52.48 -0.42 -0.03 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.51 8.12 -51.93 -0.42 0.09 16 LS Contribution 366.64 15.07 5.53 5.53 Total: -1.00 -37.58 366.64 -9.91 -47.49 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -4.75 Total: 4.19 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.47 Total: -9.66 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.19 Total: -42.24 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.17 Total: -18.70 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.09 Total: 19.99 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -4.49 Total: -6.59 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.58 -9.91 -47.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578437582.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.258 kcal (2) G-P(sol) polarization free energy of solvation -37.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds