Wall clock time and date at job start Sat Apr 11 2020 05:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47019 * 2 1 4 4 C 1.50693 * 109.46900 * 120.00141 * 2 1 3 5 5 H 1.08006 * 119.99949 * 120.00111 * 4 2 1 6 6 C 1.37878 * 120.00042 * 299.99674 * 4 2 1 7 7 N 1.31520 * 120.00046 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 119.99932 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47046 * 90.00020 * 8 6 4 10 10 H 1.48506 * 109.47062 * 209.99704 * 8 6 4 11 11 H 1.48499 * 109.47467 * 330.00133 * 8 6 4 12 12 N 1.46496 * 109.46668 * 240.00083 * 2 1 3 13 13 C 1.34779 * 120.00047 * 85.00610 * 12 2 1 14 14 O 1.21357 * 120.00080 * 359.97438 * 13 12 2 15 15 C 1.49354 * 119.99878 * 179.97438 * 13 12 2 16 16 O 1.21379 * 120.00081 * 0.02562 * 15 13 12 17 17 N 1.34778 * 119.99864 * 179.97438 * 15 13 12 18 18 C 1.39796 * 120.00011 * 185.27624 * 17 15 13 19 19 C 1.39082 * 119.98509 * 213.31704 * 18 17 15 20 20 C 1.38146 * 120.25465 * 180.02562 * 19 18 17 21 21 C 1.38189 * 120.21929 * 359.97438 * 20 19 18 22 22 Cl 1.73600 * 120.01795 * 179.97438 * 21 20 19 23 23 C 1.39760 * 119.96485 * 359.97438 * 21 20 19 24 24 C 1.47663 * 120.12696 * 179.97438 * 23 21 20 25 25 O 1.21474 * 119.99661 * 359.72812 * 24 23 21 26 26 O 1.34714 * 119.99710 * 179.97438 * 24 23 21 27 27 C 1.38589 * 119.98430 * 33.56866 * 18 17 15 28 28 H 1.09001 * 109.46831 * 300.00231 * 1 2 3 29 29 H 1.09004 * 109.47096 * 59.99644 * 1 2 3 30 30 H 1.08998 * 109.47019 * 179.97438 * 1 2 3 31 31 H 0.96993 * 120.00124 * 180.02562 * 7 6 4 32 32 H 0.97001 * 120.00390 * 264.99355 * 12 2 1 33 33 H 0.96999 * 119.99989 * 5.27689 * 17 15 13 34 34 H 1.08004 * 119.87000 * 0.02562 * 19 18 17 35 35 H 1.08005 * 119.88970 * 179.97438 * 20 19 18 36 36 H 0.96705 * 116.99745 * 180.02562 * 26 24 23 37 37 H 1.08000 * 120.10986 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1380 -0.8591 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8582 1.1592 -2.4117 15 6 2.6454 -0.7222 -3.5765 16 8 2.9339 -1.8999 -3.5220 17 7 2.7736 -0.0499 -4.7376 18 6 3.1338 -0.7315 -5.9038 19 6 3.9126 -0.0983 -6.8665 20 6 4.2713 -0.7664 -8.0213 21 6 3.8591 -2.0691 -8.2277 22 17 4.3123 -2.9035 -9.6810 23 6 3.0771 -2.7145 -7.2658 24 6 2.6342 -4.1063 -7.4830 25 8 2.9453 -4.6908 -8.5014 26 8 1.8809 -4.7261 -6.5539 27 6 2.7102 -2.0360 -6.1024 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9034 -0.5279 4.4375 32 1 2.2491 -1.6317 -1.1527 33 1 2.6161 0.9069 -4.7640 34 1 4.2382 0.9197 -6.7107 35 1 4.8759 -0.2689 -8.7652 36 1 1.6155 -5.6371 -6.7403 37 1 2.1024 -2.5277 -5.3573 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:50 Heat of formation + Delta-G solvation = -118.734456 kcal Electronic energy + Delta-G solvation = -26109.612760 eV Core-core repulsion = 21878.878576 eV Total energy + Delta-G solvation = -4230.734185 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.28226 -40.44339 -39.25485 -38.20101 -36.85955 -36.24336 -35.62716 -34.78881 -32.51230 -32.00176 -30.29855 -29.92662 -25.54211 -25.25966 -25.11315 -23.18613 -21.72711 -20.85600 -19.95698 -19.16407 -18.29855 -17.98251 -17.14721 -16.77924 -16.38997 -16.09471 -15.90079 -15.69821 -15.66420 -15.10858 -14.54591 -14.36957 -13.97862 -13.64893 -13.56453 -13.38312 -13.02870 -12.83675 -12.49042 -12.33510 -12.04359 -12.00019 -11.79602 -11.76339 -11.51938 -11.41592 -10.91764 -10.60114 -10.30922 -10.28041 -9.82448 -9.66242 -9.39019 -9.34777 -8.89944 -8.57573 -8.46974 -6.29656 -4.34262 0.09346 0.60842 1.50599 1.73992 2.16690 2.31600 2.66370 3.13368 3.15820 3.28303 3.29841 3.41663 3.73525 4.19092 4.21977 4.41985 4.63322 4.69899 4.77545 4.92909 5.03772 5.27663 5.37563 5.57911 5.67737 5.77028 6.14409 6.18482 6.18867 6.26577 6.37098 6.63059 6.72494 6.92934 7.02925 7.30882 7.50646 7.60834 7.90011 8.29666 8.38441 8.69966 9.28236 10.82242 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.024613 B = 0.002326 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.332828 B =12035.100280 C =12694.838613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.235 3.765 3 H 0.055 0.945 4 C -0.541 4.541 5 H 0.084 0.916 6 C 0.081 3.919 7 N -0.887 5.887 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.262 1.262 12 N -0.658 5.658 13 C 0.498 3.502 14 O -0.534 6.534 15 C 0.509 3.491 16 O -0.494 6.494 17 N -0.651 5.651 18 C 0.144 3.856 19 C -0.095 4.095 20 C -0.101 4.101 21 C 0.000 4.000 22 Cl -0.032 7.032 23 C -0.102 4.102 24 C 0.524 3.476 25 O -0.493 6.493 26 O -0.506 6.506 27 C -0.054 4.054 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.057 0.943 31 H 0.269 0.731 32 H 0.410 0.590 33 H 0.427 0.573 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.417 0.583 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.501 -0.561 -24.011 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.132 3.868 3 H 0.072 0.928 4 C -0.579 4.579 5 H 0.102 0.898 6 C -0.124 4.124 7 N -0.524 5.524 8 Si 0.715 3.285 9 H -0.201 1.201 10 H -0.220 1.220 11 H -0.186 1.186 12 N -0.308 5.308 13 C 0.277 3.723 14 O -0.413 6.413 15 C 0.292 3.708 16 O -0.366 6.366 17 N -0.299 5.299 18 C 0.049 3.951 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.028 4.028 22 Cl -0.002 7.002 23 C -0.105 4.105 24 C 0.367 3.633 25 O -0.381 6.381 26 O -0.318 6.318 27 C -0.075 4.075 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.245 0.755 33 H 0.266 0.734 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.276 0.724 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.709 -0.419 -23.987 24.051 hybrid contribution -0.657 0.097 0.093 0.670 sum 1.052 -0.322 -23.894 23.919 Atomic orbital electron populations 1.22477 0.98617 1.01381 0.99687 1.19334 0.90603 0.94785 0.82034 0.92757 1.20984 1.33835 1.14797 0.88251 0.89833 1.24821 0.95423 0.96726 0.95421 1.69858 1.44430 1.39946 0.98119 0.86883 0.80589 0.83444 0.77623 1.20148 1.21978 1.18629 1.46156 1.61173 1.14869 1.08552 1.19598 0.81079 0.87215 0.84455 1.90740 1.50822 1.15112 1.84614 1.20927 0.77910 0.87284 0.84679 1.90795 1.45621 1.15485 1.84733 1.43245 1.67441 1.13439 1.05787 1.17685 0.97062 0.92957 0.87442 1.21189 0.95785 1.01387 0.93204 1.20827 1.00841 0.92098 0.98236 1.20990 0.98632 0.93474 0.89716 1.98422 1.90567 1.77702 1.33532 1.18646 1.03550 0.92197 0.96065 1.20539 0.75490 0.86697 0.80540 1.90981 1.53350 1.66433 1.27348 1.84590 1.64943 1.33795 1.48470 1.21514 0.97009 0.93393 0.95572 0.92965 0.94343 0.92381 0.92087 0.75466 0.73391 0.83516 0.83285 0.72425 0.82129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 8.96 37.16 0.33 -3.07 16 2 C 0.23 5.26 2.15 -69.08 -0.15 5.11 16 3 H 0.05 1.31 6.64 -51.93 -0.34 0.96 16 4 C -0.54 -14.07 9.31 -34.44 -0.32 -14.39 16 5 H 0.08 2.32 7.98 -52.48 -0.42 1.90 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -25.54 13.96 55.43 0.77 -24.77 16 8 Si 0.89 20.65 24.37 -169.99 -4.14 16.50 16 9 H -0.27 -6.20 6.87 56.52 0.39 -5.81 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.26 -5.95 6.53 56.52 0.37 -5.58 16 12 N -0.66 -12.55 5.06 -55.40 -0.28 -12.84 16 13 C 0.50 8.57 7.85 -11.63 -0.09 8.48 16 14 O -0.53 -10.05 16.15 5.49 0.09 -9.96 16 15 C 0.51 7.28 7.62 -11.63 -0.09 7.19 16 16 O -0.49 -7.83 14.17 5.47 0.08 -7.75 16 17 N -0.65 -7.07 5.32 -10.32 -0.05 -7.12 16 18 C 0.14 1.45 6.27 -83.78 -0.53 0.92 16 19 C -0.09 -0.70 9.95 -39.30 -0.39 -1.09 16 20 C -0.10 -0.75 9.81 -39.63 -0.39 -1.14 16 21 C 0.00 0.00 6.35 -39.03 -0.25 -0.25 16 22 Cl -0.03 -0.33 26.01 -51.86 -1.35 -1.68 16 23 C -0.10 -1.13 5.87 -104.98 -0.62 -1.74 16 24 C 0.52 5.91 8.26 34.58 0.29 6.19 16 25 O -0.49 -6.35 14.74 -19.25 -0.28 -6.63 16 26 O -0.51 -4.63 12.68 -40.53 -0.51 -5.14 16 27 C -0.05 -0.61 8.22 -38.95 -0.32 -0.93 16 28 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.41 7.41 8.01 -40.82 -0.33 7.08 16 33 H 0.43 3.82 8.30 -40.82 -0.34 3.48 16 34 H 0.15 0.67 8.06 -52.48 -0.42 0.25 16 35 H 0.15 0.72 8.06 -52.48 -0.42 0.30 16 36 H 0.42 1.84 9.11 45.56 0.42 2.25 16 37 H 0.16 2.02 5.97 -52.49 -0.31 1.70 16 LS Contribution 339.03 15.07 5.11 5.11 Total: -1.00 -32.37 339.03 -5.56 -37.93 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -2.37 Total: 8.99 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -2.62 Total: 7.36 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.44 Total: -44.73 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.63 Total: -29.49 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.14 Total: 16.50 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.35 Total: -1.68 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.37 -5.56 -37.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.803 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds