Wall clock time and date at job start Sat Apr 11 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47019 * 2 1 4 4 C 1.50693 * 109.46900 * 120.00141 * 2 1 3 5 5 H 1.08006 * 119.99949 * 120.00111 * 4 2 1 6 6 C 1.37878 * 120.00042 * 299.99674 * 4 2 1 7 7 N 1.31520 * 120.00046 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 119.99932 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47046 * 90.00020 * 8 6 4 10 10 H 1.48506 * 109.47062 * 209.99704 * 8 6 4 11 11 H 1.48499 * 109.47467 * 330.00133 * 8 6 4 12 12 N 1.46496 * 109.46668 * 240.00083 * 2 1 3 13 13 C 1.34779 * 120.00047 * 85.00610 * 12 2 1 14 14 O 1.21357 * 120.00080 * 359.97438 * 13 12 2 15 15 C 1.49354 * 119.99878 * 179.97438 * 13 12 2 16 16 O 1.21379 * 120.00081 * 0.02562 * 15 13 12 17 17 N 1.34778 * 119.99864 * 179.97438 * 15 13 12 18 18 C 1.39796 * 120.00011 * 185.27624 * 17 15 13 19 19 C 1.39082 * 119.98509 * 213.31704 * 18 17 15 20 20 C 1.38146 * 120.25465 * 180.02562 * 19 18 17 21 21 C 1.38189 * 120.21929 * 359.97438 * 20 19 18 22 22 Cl 1.73600 * 120.01795 * 179.97438 * 21 20 19 23 23 C 1.39760 * 119.96485 * 359.97438 * 21 20 19 24 24 C 1.47663 * 120.12696 * 179.97438 * 23 21 20 25 25 O 1.21474 * 119.99661 * 359.72812 * 24 23 21 26 26 O 1.34714 * 119.99710 * 179.97438 * 24 23 21 27 27 C 1.38589 * 119.98430 * 33.56866 * 18 17 15 28 28 H 1.09001 * 109.46831 * 300.00231 * 1 2 3 29 29 H 1.09004 * 109.47096 * 59.99644 * 1 2 3 30 30 H 1.08998 * 109.47019 * 179.97438 * 1 2 3 31 31 H 0.96993 * 120.00124 * 180.02562 * 7 6 4 32 32 H 0.97001 * 120.00390 * 264.99355 * 12 2 1 33 33 H 0.96999 * 119.99989 * 5.27689 * 17 15 13 34 34 H 1.08004 * 119.87000 * 0.02562 * 19 18 17 35 35 H 1.08005 * 119.88970 * 179.97438 * 20 19 18 36 36 H 0.96705 * 116.99745 * 180.02562 * 26 24 23 37 37 H 1.08000 * 120.10986 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1380 -0.8591 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8582 1.1592 -2.4117 15 6 2.6454 -0.7222 -3.5765 16 8 2.9339 -1.8999 -3.5220 17 7 2.7736 -0.0499 -4.7376 18 6 3.1338 -0.7315 -5.9038 19 6 3.9126 -0.0983 -6.8665 20 6 4.2713 -0.7664 -8.0213 21 6 3.8591 -2.0691 -8.2277 22 17 4.3123 -2.9035 -9.6810 23 6 3.0771 -2.7145 -7.2658 24 6 2.6342 -4.1063 -7.4830 25 8 2.9453 -4.6908 -8.5014 26 8 1.8809 -4.7261 -6.5539 27 6 2.7102 -2.0360 -6.1024 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9034 -0.5279 4.4375 32 1 2.2491 -1.6317 -1.1527 33 1 2.6161 0.9069 -4.7640 34 1 4.2382 0.9197 -6.7107 35 1 4.8759 -0.2689 -8.7652 36 1 1.6155 -5.6371 -6.7403 37 1 2.1024 -2.5277 -5.3573 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:49 Heat of formation + Delta-G solvation = -144.069023 kcal Electronic energy + Delta-G solvation = -26110.711350 eV Core-core repulsion = 21878.878576 eV Total energy + Delta-G solvation = -4231.832774 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.29060 -41.39082 -40.35091 -39.29457 -37.68114 -37.13617 -37.05061 -35.89868 -34.41271 -32.72392 -31.91361 -30.86800 -27.27858 -26.50844 -26.02574 -24.13892 -22.85314 -22.02662 -21.34894 -20.35001 -19.30040 -18.85204 -18.46136 -18.05756 -17.44578 -17.31298 -17.09395 -16.81105 -16.75300 -16.22885 -15.90476 -15.35292 -15.15696 -14.94747 -14.78786 -14.45871 -14.32934 -14.13171 -13.73778 -13.60182 -13.27993 -13.24599 -12.90058 -12.78075 -12.66075 -12.57740 -12.55645 -12.14097 -11.58194 -11.47309 -11.32419 -11.10502 -10.89062 -10.74337 -10.33875 -10.11982 -9.38572 -8.37443 -6.46011 -0.66906 -0.21215 0.37872 0.97383 1.18463 1.31746 1.38380 1.39243 1.48229 1.94806 2.04608 2.27430 2.47067 2.57446 2.98314 3.33164 3.52491 3.75239 3.92271 3.99511 4.26882 4.40929 4.52837 4.54269 4.64295 4.65187 4.85891 4.93387 4.98413 5.01092 5.20225 5.34716 5.45726 5.47483 5.50223 5.78867 6.07718 6.45324 6.55009 6.67467 6.90108 6.93171 7.21663 8.77913 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.024613 B = 0.002326 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.332828 B =12035.100280 C =12694.838613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.241 3.759 3 H 0.042 0.958 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.028 3.972 7 N -0.934 5.934 8 Si 0.943 3.057 9 H -0.259 1.259 10 H -0.294 1.294 11 H -0.250 1.250 12 N -0.667 5.667 13 C 0.502 3.498 14 O -0.547 6.547 15 C 0.519 3.481 16 O -0.513 6.513 17 N -0.631 5.631 18 C 0.126 3.874 19 C -0.071 4.071 20 C -0.090 4.090 21 C -0.006 4.006 22 Cl -0.039 7.039 23 C -0.120 4.120 24 C 0.523 3.477 25 O -0.516 6.516 26 O -0.508 6.508 27 C -0.064 4.064 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.271 0.729 32 H 0.413 0.587 33 H 0.438 0.562 34 H 0.185 0.815 35 H 0.183 0.817 36 H 0.434 0.566 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 1.458 -26.038 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.137 3.863 3 H 0.059 0.941 4 C -0.579 4.579 5 H 0.070 0.930 6 C -0.172 4.172 7 N -0.573 5.573 8 Si 0.769 3.231 9 H -0.185 1.185 10 H -0.222 1.222 11 H -0.175 1.175 12 N -0.317 5.317 13 C 0.282 3.718 14 O -0.426 6.426 15 C 0.301 3.699 16 O -0.387 6.387 17 N -0.279 5.279 18 C 0.032 3.968 19 C -0.091 4.091 20 C -0.109 4.109 21 C -0.034 4.034 22 Cl -0.009 7.009 23 C -0.123 4.123 24 C 0.368 3.632 25 O -0.406 6.406 26 O -0.322 6.322 27 C -0.085 4.085 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.249 0.751 33 H 0.279 0.721 34 H 0.203 0.797 35 H 0.200 0.800 36 H 0.296 0.704 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.497 1.602 -26.068 26.160 hybrid contribution -0.520 -0.581 0.623 0.998 sum 0.977 1.022 -25.446 25.485 Atomic orbital electron populations 1.22383 0.96971 1.02059 1.00282 1.19013 0.91776 0.93642 0.81869 0.94051 1.21214 1.32862 1.13812 0.90023 0.92950 1.25630 0.96827 0.99685 0.95089 1.69988 1.46457 1.42023 0.98785 0.85947 0.79531 0.79928 0.77679 1.18475 1.22162 1.17454 1.45981 1.62097 1.15030 1.08569 1.19966 0.80111 0.86953 0.84743 1.90725 1.51111 1.15729 1.85025 1.20220 0.78258 0.86797 0.84655 1.90808 1.46883 1.16114 1.84938 1.43008 1.66204 1.13774 1.04925 1.17833 0.98473 0.92805 0.87657 1.21558 0.93403 1.02590 0.91584 1.21228 1.00020 0.90922 0.98703 1.21250 0.98535 0.94389 0.89218 1.98422 1.90544 1.78137 1.33832 1.18726 1.04663 0.92285 0.96621 1.20698 0.75232 0.86968 0.80337 1.90963 1.54432 1.67027 1.28208 1.84567 1.64403 1.35261 1.47975 1.21374 0.97516 0.94146 0.95461 0.93464 0.92486 0.91773 0.91949 0.75126 0.72057 0.79741 0.79993 0.70352 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.33 8.96 71.98 0.65 -5.68 16 2 C 0.24 10.65 2.15 44.25 0.10 10.74 16 3 H 0.04 1.95 6.64 -2.39 -0.02 1.94 16 4 C -0.54 -28.62 9.31 25.60 0.24 -28.38 16 5 H 0.05 3.02 7.98 -2.91 -0.02 3.00 16 6 C 0.03 1.51 5.45 84.65 0.46 1.97 16 7 N -0.93 -54.97 13.96 21.45 0.30 -54.67 16 8 Si 0.94 42.08 24.37 68.60 1.67 43.75 16 9 H -0.26 -10.85 6.87 99.48 0.68 -10.17 16 10 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.25 -10.65 6.53 99.48 0.65 -10.00 16 12 N -0.67 -25.23 5.06 -447.54 -2.27 -27.50 16 13 C 0.50 16.70 7.85 87.24 0.68 17.38 16 14 O -0.55 -19.56 16.15 -3.27 -0.05 -19.62 16 15 C 0.52 14.18 7.62 87.24 0.66 14.85 16 16 O -0.51 -16.05 14.17 -3.34 -0.05 -16.09 16 17 N -0.63 -12.21 5.32 -304.92 -1.62 -13.83 16 18 C 0.13 2.24 6.27 38.16 0.24 2.48 16 19 C -0.07 -0.76 9.95 22.45 0.22 -0.54 16 20 C -0.09 -1.01 9.81 22.24 0.22 -0.79 16 21 C -0.01 -0.11 6.35 22.63 0.14 0.04 16 22 Cl -0.04 -0.76 26.01 -2.72 -0.07 -0.83 16 23 C -0.12 -2.56 5.87 -20.09 -0.12 -2.68 16 24 C 0.52 11.75 8.26 70.31 0.58 12.33 16 25 O -0.52 -13.28 14.74 19.92 0.29 -12.99 16 26 O -0.51 -9.31 12.68 -56.24 -0.71 -10.02 16 27 C -0.06 -1.40 8.22 22.68 0.19 -1.21 16 28 H 0.05 1.92 3.27 -2.39 -0.01 1.91 16 29 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.41 15.11 8.01 -92.71 -0.74 14.37 16 33 H 0.44 6.49 8.30 -92.71 -0.77 5.72 16 34 H 0.19 0.62 8.06 -2.91 -0.02 0.59 16 35 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 36 H 0.43 3.77 9.11 -74.05 -0.67 3.10 16 37 H 0.14 3.60 5.97 -2.91 -0.02 3.59 16 Total: -1.00 -70.89 339.03 0.69 -70.20 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -1.07 Total: 21.07 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 4.26 Total: 20.52 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -3.59 Total: -96.00 kcal Atomic # 8 Polarization: -58.20 SS G_CDS: -0.52 Total: -58.72 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.67 Total: 43.75 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.07 Total: -0.83 kcal Total: -70.89 0.69 -70.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.865 kcal (2) G-P(sol) polarization free energy of solvation -70.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds