Wall clock time and date at job start Sat Apr 11 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46933 * 2 1 4 4 C 1.50702 * 109.47560 * 240.00138 * 2 1 3 5 5 H 1.08004 * 119.99713 * 240.00303 * 4 2 1 6 6 C 1.37869 * 119.99959 * 59.99695 * 4 2 1 7 7 N 1.31517 * 120.00458 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99751 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47128 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47287 * 299.99941 * 8 6 4 11 11 H 1.48499 * 109.47154 * 59.99937 * 8 6 4 12 12 N 1.46498 * 109.47129 * 119.99290 * 2 1 3 13 13 C 1.34773 * 120.00348 * 275.00804 * 12 2 1 14 14 O 1.21357 * 120.00167 * 359.97438 * 13 12 2 15 15 C 1.49357 * 119.99896 * 180.02562 * 13 12 2 16 16 O 1.21376 * 120.00127 * 359.97438 * 15 13 12 17 17 N 1.34775 * 119.99839 * 179.97438 * 15 13 12 18 18 C 1.39754 * 119.99970 * 174.71944 * 17 15 13 19 19 C 1.39031 * 119.99572 * 326.42414 * 18 17 15 20 20 C 1.38320 * 120.21168 * 179.71844 * 19 18 17 21 21 Cl 1.73604 * 119.89301 * 180.27209 * 20 19 18 22 22 C 1.38139 * 120.20943 * 0.54906 * 20 19 18 23 23 C 1.39622 * 119.98585 * 359.72569 * 22 20 19 24 24 C 1.47749 * 120.10429 * 180.02562 * 23 22 20 25 25 O 1.21467 * 119.99346 * 179.97438 * 24 23 22 26 26 O 1.34707 * 120.00202 * 359.97438 * 24 23 22 27 27 C 1.38654 * 119.99479 * 146.68916 * 18 17 15 28 28 H 1.08999 * 109.46933 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47448 * 300.00591 * 1 2 3 30 30 H 1.09003 * 109.46913 * 60.00341 * 1 2 3 31 31 H 0.96999 * 119.99908 * 180.02562 * 7 6 4 32 32 H 0.97003 * 119.99485 * 95.00073 * 12 2 1 33 33 H 0.97004 * 120.00028 * 354.72700 * 17 15 13 34 34 H 1.08000 * 119.89615 * 359.97438 * 19 18 17 35 35 H 1.08000 * 120.00659 * 179.74330 * 22 20 19 36 36 H 0.96697 * 117.00249 * 180.02562 * 26 24 23 37 37 H 1.07998 * 120.10086 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2305 5 1 2.6534 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6035 8 14 2.3217 -1.1203 -4.0078 9 1 1.8273 -0.4199 -5.2204 10 1 3.8066 -1.1208 -4.0080 11 1 1.8262 -2.5203 -4.0076 12 7 2.0183 -0.6905 1.1962 13 6 2.1469 -0.0181 2.3572 14 8 1.8586 1.1595 2.4115 15 6 2.6453 -0.7220 3.5766 16 8 2.9341 -1.8996 3.5221 17 7 2.7744 -0.0495 4.7374 18 6 3.1345 -0.7307 5.9033 19 6 2.7089 -2.0390 6.1034 20 6 3.0675 -2.7195 7.2530 21 17 2.5374 -4.3554 7.4912 22 6 3.8413 -2.0995 8.2149 23 6 4.2686 -0.7839 8.0253 24 6 5.0968 -0.1185 9.0521 25 8 5.4679 1.0260 8.8849 26 8 5.4404 -0.7809 10.1735 27 6 3.9115 -0.0998 6.8628 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.7090 1.1613 -3.4845 32 1 2.2490 -1.6316 1.1527 33 1 2.6173 0.9074 4.7636 34 1 2.0998 -2.5271 5.3569 35 1 4.1159 -2.6325 9.1132 36 1 5.9829 -0.3040 10.8164 37 1 4.2397 0.9178 6.7107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592222457.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:52 Heat of formation + Delta-G solvation = -159.237547 kcal Electronic energy + Delta-G solvation = -25739.810764 eV Core-core repulsion = 21507.320234 eV Total energy + Delta-G solvation = -4232.490530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.31888 -41.42685 -40.35479 -39.29509 -37.70095 -37.14230 -37.04320 -36.02787 -34.35288 -32.43203 -31.36163 -30.96279 -27.38386 -26.53605 -26.14301 -23.77615 -23.11480 -22.11275 -21.23680 -20.31330 -19.46411 -18.85474 -18.19676 -17.91101 -17.36435 -17.12423 -17.03447 -16.85582 -16.72886 -16.19640 -15.97989 -15.67907 -15.15603 -14.97348 -14.60456 -14.46193 -14.43270 -13.76269 -13.62882 -13.12592 -13.05673 -12.91421 -12.86663 -12.80786 -12.66640 -12.61311 -12.29461 -12.23397 -12.15504 -11.82338 -11.67462 -11.17448 -10.77656 -10.61807 -10.15019 -10.00657 -9.57275 -8.20409 -6.37679 -0.65903 -0.31783 0.35425 0.86314 1.15804 1.33402 1.46809 1.47489 1.55645 1.92487 2.05653 2.38144 2.42630 2.63347 3.10602 3.39976 3.65803 3.75630 3.81195 3.86135 4.00589 4.31828 4.69930 4.73826 4.84039 4.84923 4.88456 4.95563 5.01315 5.29382 5.34320 5.43188 5.50463 5.58576 5.72767 5.86739 6.03486 6.40861 6.63226 6.70844 6.90240 7.04215 7.34534 8.85406 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.017719 B = 0.002296 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.832218 B =12194.379863 C =13063.883195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.269 3.731 3 H 0.016 0.984 4 C -0.553 4.553 5 H 0.071 0.929 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.970 3.030 9 H -0.284 1.284 10 H -0.272 1.272 11 H -0.266 1.266 12 N -0.669 5.669 13 C 0.496 3.504 14 O -0.554 6.554 15 C 0.523 3.477 16 O -0.510 6.510 17 N -0.635 5.635 18 C 0.142 3.858 19 C -0.087 4.087 20 C -0.032 4.032 21 Cl -0.047 7.047 22 C -0.051 4.051 23 C -0.101 4.101 24 C 0.543 3.457 25 O -0.538 6.538 26 O -0.498 6.498 27 C -0.068 4.068 28 H 0.040 0.960 29 H 0.021 0.979 30 H 0.073 0.927 31 H 0.268 0.732 32 H 0.411 0.589 33 H 0.436 0.564 34 H 0.142 0.858 35 H 0.175 0.825 36 H 0.438 0.562 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.952 -6.738 25.514 27.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.166 3.834 3 H 0.034 0.966 4 C -0.591 4.591 5 H 0.089 0.911 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.795 3.205 9 H -0.209 1.209 10 H -0.197 1.197 11 H -0.191 1.191 12 N -0.318 5.318 13 C 0.276 3.724 14 O -0.434 6.434 15 C 0.305 3.695 16 O -0.385 6.385 17 N -0.283 5.283 18 C 0.047 3.953 19 C -0.107 4.107 20 C -0.060 4.060 21 Cl -0.018 7.018 22 C -0.070 4.070 23 C -0.103 4.103 24 C 0.387 3.613 25 O -0.429 6.429 26 O -0.312 6.312 27 C -0.088 4.088 28 H 0.059 0.941 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.247 0.753 33 H 0.276 0.724 34 H 0.160 0.840 35 H 0.192 0.808 36 H 0.301 0.699 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.643 -6.662 24.982 26.463 hybrid contribution 0.378 0.149 -0.741 0.845 sum 6.021 -6.513 24.241 25.812 Atomic orbital electron populations 1.21933 0.97384 0.99869 1.00387 1.18622 0.91730 0.92408 0.80605 0.96599 1.21459 1.33110 1.13823 0.90724 0.91104 1.25708 0.94748 0.95540 1.02041 1.70007 1.36526 1.23559 1.24895 0.85422 0.78642 0.78717 0.77731 1.20929 1.19714 1.19093 1.46264 1.61720 1.14897 1.08943 1.20018 0.80399 0.87014 0.84964 1.90733 1.51393 1.16196 1.85049 1.20241 0.78023 0.86811 0.84439 1.90767 1.46942 1.15814 1.84928 1.43033 1.66311 1.13784 1.05160 1.17319 0.98108 0.92656 0.87170 1.21339 0.98722 0.93839 0.96845 1.20565 1.01351 0.88167 0.95890 1.98405 1.89067 1.17748 1.96618 1.21507 0.93626 0.92908 0.98985 1.18653 1.02529 0.94664 0.94433 1.20419 0.76746 0.83059 0.81034 1.90930 1.53614 1.19647 1.78730 1.84488 1.67714 1.49098 1.29919 1.21149 0.94047 1.01844 0.91765 0.94081 0.95949 0.90849 0.92308 0.75295 0.72365 0.83989 0.80781 0.69862 0.82331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.58 9.26 71.98 0.67 -5.91 16 2 C 0.27 13.33 2.56 44.25 0.11 13.45 16 3 H 0.02 0.92 7.58 -2.39 -0.02 0.90 16 4 C -0.55 -28.62 8.73 25.60 0.22 -28.40 16 5 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 6 C 0.02 1.07 5.30 84.65 0.45 1.52 16 7 N -0.91 -50.34 11.32 21.44 0.24 -50.10 16 8 Si 0.97 41.24 29.54 68.60 2.03 43.26 16 9 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 12 N -0.67 -27.50 5.06 -447.53 -2.27 -29.77 16 13 C 0.50 18.75 7.85 87.24 0.68 19.43 16 14 O -0.55 -23.43 16.15 -3.27 -0.05 -23.48 16 15 C 0.52 15.94 7.62 87.24 0.66 16.60 16 16 O -0.51 -16.57 14.17 -3.33 -0.05 -16.61 16 17 N -0.63 -15.13 5.32 -304.94 -1.62 -16.75 16 18 C 0.14 3.01 6.26 38.17 0.24 3.25 16 19 C -0.09 -1.87 8.43 22.48 0.19 -1.68 16 20 C -0.03 -0.58 6.31 22.27 0.14 -0.44 16 21 Cl -0.05 -0.81 28.95 -2.72 -0.08 -0.89 16 22 C -0.05 -0.73 9.39 22.58 0.21 -0.52 16 23 C -0.10 -1.61 5.87 -20.12 -0.12 -1.73 16 24 C 0.54 8.23 8.27 70.34 0.58 8.82 16 25 O -0.54 -11.53 17.13 19.94 0.34 -11.18 16 26 O -0.50 -4.00 12.67 -56.17 -0.71 -4.71 16 27 C -0.07 -1.21 9.51 22.68 0.22 -1.00 16 28 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 31 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 32 H 0.41 15.49 8.01 -92.71 -0.74 14.75 16 33 H 0.44 9.09 8.29 -92.71 -0.77 8.32 16 34 H 0.14 3.49 6.42 -2.91 -0.02 3.47 16 35 H 0.17 1.68 7.60 -2.91 -0.02 1.66 16 36 H 0.44 -0.35 9.11 -74.06 -0.67 -1.02 16 37 H 0.16 2.62 7.65 -2.91 -0.02 2.59 16 Total: -1.00 -65.94 350.05 1.10 -64.84 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -0.99 Total: 22.01 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: 4.26 Total: 23.39 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -3.65 Total: -96.62 kcal Atomic # 8 Polarization: -55.52 SS G_CDS: -0.47 Total: -55.99 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -65.94 1.10 -64.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222457.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.401 kcal (2) G-P(sol) polarization free energy of solvation -65.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds