Wall clock time and date at job start Sat Apr 11 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29766 * 121.50907 * 2 1 4 4 S 1.69488 * 107.80283 * 180.02562 * 3 2 1 5 5 C 1.72027 * 95.97919 * 359.97438 * 4 3 2 6 6 N 1.39139 * 127.33079 * 179.97438 * 5 4 3 7 7 C 1.46505 * 119.99532 * 95.17598 * 6 5 4 8 8 C 1.34773 * 120.00165 * 275.17404 * 6 5 4 9 9 O 1.21288 * 120.00365 * 0.02562 * 8 6 5 10 10 C 1.50700 * 119.99863 * 179.97438 * 8 6 5 11 11 S 1.81001 * 109.47028 * 180.02562 * 10 8 6 12 12 C 1.76205 * 99.99841 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00246 * 359.97438 * 12 11 10 14 14 C 1.38800 * 119.99754 * 179.97438 * 12 11 10 15 15 N 1.31621 * 120.00140 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99791 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46994 * 59.99826 * 16 14 12 18 18 H 1.48494 * 109.47142 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47110 * 299.99979 * 16 14 12 20 20 C 1.38075 * 105.33945 * 0.24252 * 5 4 3 21 21 C 1.48347 * 123.05429 * 179.73330 * 20 5 4 22 22 N 1.33720 * 126.31487 * 5.23576 * 21 20 5 23 23 N 1.28569 * 109.84758 * 179.85083 * 22 21 20 24 24 N 1.28920 * 109.72910 * 0.42408 * 23 22 21 25 25 H 0.96997 * 126.42028 * 179.72760 * 24 23 22 26 26 N 1.32029 * 126.31339 * 185.55296 * 21 20 5 27 27 H 1.09001 * 109.47461 * 89.97087 * 1 2 3 28 28 H 1.09001 * 109.47330 * 209.97306 * 1 2 3 29 29 H 1.09002 * 109.46883 * 329.97192 * 1 2 3 30 30 H 1.09003 * 109.46811 * 264.74533 * 7 6 5 31 31 H 1.08998 * 109.47111 * 144.74678 * 7 6 5 32 32 H 1.08997 * 109.47045 * 24.74047 * 7 6 5 33 33 H 1.09001 * 109.47441 * 300.00087 * 10 8 6 34 34 H 1.08997 * 109.47065 * 59.99907 * 10 8 6 35 35 H 0.97003 * 119.99815 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1852 1.1063 0.0000 4 16 3.8318 0.7047 -0.0007 5 6 3.6005 -0.9999 -0.0003 6 7 4.5833 -1.9848 -0.0010 7 6 5.0209 -2.5839 1.2623 8 6 5.1328 -2.3876 -1.1639 9 8 4.7709 -1.8913 -2.2097 10 6 6.1977 -3.4539 -1.1646 11 16 6.7318 -3.7720 -2.8645 12 6 7.9422 -5.0197 -2.5765 13 1 8.1466 -5.3516 -1.5692 14 6 8.6331 -5.5760 -3.6441 15 7 8.3844 -5.1712 -4.8716 16 14 9.9158 -6.8992 -3.3388 17 1 9.2764 -8.0655 -2.6784 18 1 10.5058 -7.3247 -4.6333 19 1 10.9854 -6.3588 -2.4617 20 6 2.2319 -1.1828 -0.0052 21 6 1.5946 -2.5224 -0.0123 22 7 2.2231 -3.6989 0.0834 23 7 1.3655 -4.6561 0.0470 24 7 0.1775 -4.1715 -0.0791 25 1 -0.6479 -4.6778 -0.1352 26 7 0.3029 -2.7732 -0.1202 27 1 -0.3634 0.0005 -1.0277 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5143 30 1 5.9114 -2.0672 1.6202 31 1 5.2510 -3.6375 1.1043 32 1 4.2258 -2.4925 2.0023 33 1 7.0495 -3.1172 -0.5736 34 1 5.7950 -4.3698 -0.7324 35 1 8.8675 -5.5597 -5.6176 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592468816.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:57 Heat of formation + Delta-G solvation = 143.583688 kcal Electronic energy + Delta-G solvation = -24349.585261 eV Core-core repulsion = 20639.608124 eV Total energy + Delta-G solvation = -3709.977137 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.052 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.37448 -40.22158 -38.97952 -35.75379 -33.91464 -33.15388 -32.43577 -31.31528 -29.66928 -28.98156 -27.00553 -25.52938 -24.75805 -24.29281 -22.42949 -20.48538 -19.75832 -18.73257 -18.20173 -17.69756 -16.86142 -16.67598 -16.25865 -15.63483 -15.00165 -14.83836 -14.80643 -14.38065 -14.11336 -13.59706 -13.30820 -13.14492 -12.85384 -12.68064 -12.57621 -12.43740 -12.18531 -12.14097 -11.71899 -11.51478 -11.05756 -11.03742 -11.00859 -10.95918 -10.81461 -10.78909 -9.89456 -9.76389 -9.49947 -9.06321 -8.89888 -8.76833 -8.26502 -6.52191 -6.22056 -3.93315 0.05919 0.77522 0.96864 1.50720 1.55842 1.95924 2.59247 2.64287 2.92314 3.23471 3.24010 3.29047 3.49279 3.55233 4.00776 4.19114 4.36821 4.88207 4.93814 5.03053 5.05443 5.13286 5.13819 5.31016 5.33433 5.38317 5.45676 5.54485 5.64582 5.85450 5.86942 6.10726 6.28524 6.35115 6.38264 7.11783 7.59158 7.94913 8.28189 8.34682 9.23172 10.85342 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.015760 B = 0.003337 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.211282 B = 8389.821333 C = 9372.319448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.156 3.844 3 N -0.459 5.459 4 S 0.308 5.692 5 C 0.124 3.876 6 N -0.544 5.544 7 C 0.089 3.911 8 C 0.544 3.456 9 O -0.495 6.495 10 C -0.144 4.144 11 S -0.059 6.059 12 C -0.535 4.535 13 H 0.074 0.926 14 C 0.074 3.926 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.273 1.273 20 C -0.118 4.118 21 C 0.284 3.716 22 N -0.282 5.282 23 N 0.017 4.983 24 N -0.299 5.299 25 H 0.469 0.531 26 N -0.291 5.291 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.132 6.615 15.887 23.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.022 4.022 3 N -0.282 5.282 4 S 0.465 5.535 5 C -0.103 4.103 6 N -0.278 5.278 7 C -0.054 4.054 8 C 0.333 3.667 9 O -0.366 6.366 10 C -0.294 4.294 11 S 0.168 5.832 12 C -0.683 4.683 13 H 0.092 0.908 14 C -0.135 4.135 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.199 1.199 20 C -0.143 4.143 21 C 0.001 3.999 22 N -0.160 5.160 23 N 0.020 4.980 24 N -0.146 5.146 25 H 0.324 0.676 26 N -0.135 5.135 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.761 8.813 14.126 22.926 hybrid contribution -0.168 -3.052 1.259 3.306 sum -15.929 5.760 15.385 22.883 Atomic orbital electron populations 1.20769 0.85552 1.04345 1.04338 1.20940 0.99138 0.86738 0.95359 1.76637 1.00045 1.25217 1.26294 1.84345 1.09689 0.96000 1.63479 1.22743 0.90625 0.96822 1.00113 1.44828 1.36969 1.36736 1.09254 1.21958 1.00052 0.99924 0.83435 1.20671 0.81824 0.82614 0.81625 1.90743 1.60652 1.54871 1.30312 1.23534 0.98318 0.98670 1.08922 1.85442 1.49186 1.51034 0.97562 1.22804 1.24644 1.24783 0.96049 0.90799 1.24984 0.97071 0.97039 0.94403 1.70004 1.40462 1.41363 0.98469 0.86222 0.80649 0.80942 0.77687 1.19886 1.20855 1.19885 1.17894 0.91298 0.89215 1.15862 1.22495 0.87131 0.93182 0.97102 1.75603 1.24779 0.95236 1.20369 1.78427 0.88594 1.22322 1.08625 1.51052 1.09637 1.03948 1.49970 0.67625 1.78862 1.17434 0.91360 1.25869 0.89415 0.88751 0.90041 0.91556 0.89105 0.90926 0.88646 0.88228 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 9.54 36.00 0.34 -0.46 16 2 C 0.16 1.92 6.74 -83.28 -0.56 1.36 16 3 N -0.46 -6.01 11.99 32.50 0.39 -5.62 16 4 S 0.31 4.00 23.70 -107.50 -2.55 1.45 16 5 C 0.12 1.79 5.42 -14.29 -0.08 1.72 16 6 N -0.54 -8.08 2.34 -122.12 -0.29 -8.36 16 7 C 0.09 0.95 10.05 59.85 0.60 1.55 16 8 C 0.54 10.42 7.66 -10.99 -0.08 10.33 16 9 O -0.49 -11.41 15.83 5.55 0.09 -11.32 16 10 C -0.14 -2.87 4.78 36.01 0.17 -2.70 16 11 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 12 C -0.53 -14.99 9.50 30.94 0.29 -14.69 16 13 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 14 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 15 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 16 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 C -0.12 -1.63 5.88 -105.61 -0.62 -2.26 16 21 C 0.28 3.90 7.87 -156.43 -1.23 2.67 16 22 N -0.28 -4.12 11.53 32.11 0.37 -3.75 16 23 N 0.02 0.21 13.42 60.35 0.81 1.02 16 24 N -0.30 -2.73 8.44 60.35 0.51 -2.22 16 25 H 0.47 1.98 8.96 -331.92 -2.98 -1.00 16 26 N -0.29 -3.27 10.10 32.13 0.32 -2.94 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 0.81 5.83 -51.93 -0.30 0.50 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.96 6.66 -51.93 -0.35 0.62 16 32 H 0.07 0.67 8.00 -51.93 -0.42 0.25 16 33 H 0.10 1.70 8.11 -51.91 -0.42 1.28 16 34 H 0.10 1.86 7.41 -51.92 -0.38 1.47 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 340.48 15.07 5.13 5.13 Total: -1.00 -36.37 340.48 -8.63 -45.00 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -5.66 Total: -5.01 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.26 Total: -0.47 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 2.85 Total: -47.15 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -4.76 Total: -2.34 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.37 -8.63 -45.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592468816.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.586 kcal (2) G-P(sol) polarization free energy of solvation -36.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds